Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00796 ATGGAGCGGAATTACCCCTATGAGAATGGAGTGATGATGACGAGAGACCCAAAGCCAAGACTGAGATGGACTGCTGATCTTCACGACCGTTTTGTAGACGCGGTCACCAAGCTTGGTGGCCCGGAAAAAGCAACTCCCAAGTCTGTGTTAAGATTGATGGGTTTAAAGGGCTTGACTTTGTATCACTTGAAGAGCCATTTGCAGAAGTATAGACTTGGACTGCAAACACGAAAACAAAATTTGGCAGAGCAAAGGAATGAAAGCAGTGGTACTCTTAGTAATTTCTCCGGAGTAGAGGAAGATGACAGAGGGATGCAAATTGCTGAGGCTCTTAAATCACACGTTGAAGTCCAAAAAACAATACTAGAACAACTCGAGGTACAAAATAAACTACAAATGAGAATAGAGGCTCAAGGAAAATACTTGCAAGATATCTTAGAGAATGCACAAAAGAGTCTGGCACTCGCCATTAACAATAACCTTGGTAGTCTTGACCAAAGCACAGAAATGCAGTTAATAAACTTCGATGCGGCTCTGTCAGATCAAATTGAAAAATTTAAGAAACAAGAAATAAGAGGAAGTATAACAAACCTAAATGATGTTTGTAAGAAGACCCGTGATTCAATCATCCAGATATGCGAAATGGAGGCTGCAGAAGAAGATACAAACGAGTTTAATGTCGAAAAGAATATGATCAACTTTGATTTGAATTCCAAAGGTGGCTATGATTACAGTGCAAACGGGGCTGAAATACTTGAGCCCAAAGTGCTTCCTTGTTCAAGGTAA 786 40.46 MERNYPYENGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGPEKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGLQTRKQNLAEQRNESSGTLSNFSGVEEDDRGMQIAEALKSHVEVQKTILEQLEVQNKLQMRIEAQGKYLQDILENAQKSLALAINNNLGSLDQSTEMQLINFDAALSDQIEKFKKQEIRGSITNLNDVCKKTRDSIIQICEMEAAEEDTNEFNVEKNMINFDLNSKGGYDYSANGAEILEPKVLPCSR* 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10249813 10252674 + Chy4G075140.1 Chy04g00796 224695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00796 261 Pfam Myb-like DNA-binding domain 21 71 IPR001005 -
Chy04g00796 261 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 8 248 IPR044848 GO:0003700
Chy04g00796 261 Pfam MYB-CC type transfactor, LHEQLE motif 105 152 IPR025756 -
Chy04g00796 261 Gene3D - 17 74 - -
Chy04g00796 261 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 75 IPR017930 -
Chy04g00796 261 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 8 248 - -
Chy04g00796 261 SUPERFAMILY Homeodomain-like 18 75 IPR009057 -
Chy04g00796 261 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 18 72 IPR006447 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00796 Chy-Chr4:10249813 Chy06g00365 Chy-Chr6:2434197 7.84E-54 dispersed
Chy04g00796 Chy-Chr4:10249813 Chy11g01047 Chy-Chr11:14949199 4.24E-50 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17840 PF00249 Myb_DNA-binding 2.70E-07 CL0123 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00796 - - csv:101219098 508.834