Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00803 ATGTCCCTCCTTAGTAGATTCTTTTACCGAAGACCTCCAGATGGGTTGCTGGAATTTGTTGAACGAGTCTATATTTTTGATTCGTGTTTTTCGACTGAAGCTTTGCCTGATGGTATGTACCAAATATATCTGCATGAAATCATTAATGAATTACATGAAGAATTCCCGGACTCTTCCTTCCTTGCGTTTAATTTTCGTGAAGGGGAGAAAAGGAGCCAATTTGCAGAAGTGTTGTGTGCGTATGACGTCACTGTCATGGATTATCCTCGACAATATGAAGGTTGTCCTCTTCTTCCACTGTCGTTGATTCAGCACTTCCTCCGTGTTTGTGAAAGTTGGCTTCTGCTTGGTAACCAACAAAATGTTATTCTTCTTCACTGTGAGAGGGGAGGTTGGCCTCTCTTGGCATTCCTTTTGGCTAGCTTTTTGATTTTTAGAAAAATGCACAGTGGTGAGAGGAAAACTCTTGAAATTGTACACCGAGAAGCTCCCAAAGGGTTTTTGCAGCTCTTGTCCCCACTAAATCCATTTCCATCTCAGCTCCGTTACTTGCAATATGTAGCAAGGAGAAATATAGTCTCTGAGTGGCCACCACCTGAGCGAGCACTCTCTTTAGATTGTGTAATTCTTCGTGGCGTTCCAGGTTTTGATGCTCAGAATGGCTGCAGACCAGTCATTCGTATTTTTGGGAGGAATCTTTTTAGTAAGGGTGGGCTTTCCACGAAGATGCTTTTCTCTATGCCCAAGAAGAACAAGGCCCTCCGTCACTACCATCAGACAGACTGTGATGTGATTAAAATAGACGTACAGTGCTTGGTTCAAGGAGATGTAGTGTTGGAGTGTTCACATTTGGAATCGGAACCAGAAAGAGAAGTTATGATGTTTCGTATTATGTTCAATACAGCATTTATTAGATCAAACATACTAATGCTAACTTCTGAAAATTTGGATATTCTTTGGGATTCAAAGGAGCGTTATCCAAAAGGCTTTCGAGCTGAGGTTTTGTTTGGGGAGATGGAAAACATCTCCCCTCCAAGGGCTCCAACCTCCATTTTGAATGGTGAAGAGAAAGGTGGATTGCCAATTGAAGCTTTTTCCAGGGTTCAAGAACTTTTTAGTGGTGTCGAGTGGATTGATAACAACGATGATGCTGCCTTGTGGCTACTTAAGAATCTTTCTGCCTTGAGTGATGTGAAAGAATTGTCAAGATTGCAAAATAAAACAAGTTCATACTCCTCACCAATAGATTCTGAAGAGGAAAATAATACATCTAGCACTGCCGATAGTTCAGATGAAGTGTTTGATATTATTACAAAGCCTTTTGTGGATCCAACTTCTACCAACTTTACAATTCCGGCCACGGTACATTCTTCTGAATTATTGTCTGACAAGATTGGTGCTAATGAAGTGAATATTTCATCAGAGTCTCCTCAATCTTCTGATGGATTTCAAGACAAGATATTTTCAAATAAAGAACCTTTACCCTCTTCATCACCTCTGTTGCCTCCATCTAATCTACCATCTACTGATGCTAGTGGGAAACTTGACTCAAATAATATGACACCCAATGTTAAAGTGATTCCTCCACCACCACCGCCGCCACCTTTTTCTCTATCACATAACAAGCCTCATGTAGAAACTTCCTCTAGTTCAGATTCGACCACTGTAACAATGCATGTGAGACCCCCTCCACCTCCTCCACCTCCACCTCAGTATCCTACTATTAACAATCCTGTTACAACGACTGATTCACTTTCACATGTTCCTAAATCTTCTGGTGCACCCCCACCCCCACCTCCACCTTTAGTTCCAAAATCTTCTAGTGCTCCTTCACCTCCACCTCCACCTCCACCCCCAATTGCAAAATCTTCTGGTGCTCCCCCACCTCCGCCTCCTCCCCCTCCAGTAGTCCTGAAATCTTCTAGTGCTCCTCCACCTCCACCTCCGCATACAGTTCCGAAATCTTCTAGTGTTCCTCTGCCCCCTCCCCAGCCACCGCCTCCGCCTCCGCCTCCAGTTTCAAAATCTTCTAGTGCTCCTCCACCTCCACCTCCTCCTCCGCCCCTAAAATCTTCTAGTGCTCCCCCACCTCCTCCAACTCCGCCTCTAAAATTTTCTAGTGCTCCTCCACCTCCACCTCCTCCTCCGTTTTCAAAATTCTCTAGCGCTCCTCCGCCTCCGCCTCCACCTCCATTTCCAAAACTTTCTGGTGCTCCTCCACCTCCACCTCCACCTCCACCTCCTCCTCCTCCACAATCAAATAGTGGTGCACCAGTTCCACCTCCTCCCCCACCATCGAAACCTCCCAGTGTTGAGCTGCCAAGTCATGGTGCTAAATCAACTAGACCTCCTCCACCTCCTCCACCAGCAAAGCCCTTCAATGCCAATTCTCTGACAAGTCAAGGTGCTACACCAATACCACCCCCTCCCCCCGGATCAAGAGAATCAAATGTACCACCGCCGCTGCTGCCTTCTGCTGGAAGAGGCAAAGCTTCCCTGGGATCAACAGCTCAAGGAAGAGGCCGAGTTGCCACAGGAGTTGTAAATGCTCCAAAAAAAAACACCTTAAAACCATTACACTGGGTGAAAGTTACTCGAGCAATGCAAGGGAGTTTATGGGCTGACTCACAAAAGCAGGAAAATCAATCAAGGGCCCCAGAAATAGACATCTCTGAACTTGAAAGTCTATTCTCAGCCGCTTCTGCTTCTGATGGAAGTGGCAGTAAAGGTGGAGGTCGACGAGGTTCCAACATCAATAAACCTGAAAAAGTGCAACTGATTGACCTGCGGAGAGCATACAACTGTGAGATAATGCTCTCAAAAATAAAGATTCCCTTACCGGATATGATAAATTCAGTTCTTGCATTGGATTCTTCTGCTCTTGATATTGACCAGGTTGAGAATCTCATCAAGTTTTGTCCTACTAGGGAAGAGATGGAAACGTTGAAGGGTTATACAGGTGACAGAGAAATGCTCGGAAAGTGTGAGCAGTTTTTTCTCGAGCTATTGAAGGTCCCTCGAATAGAGTCCAAGTTACGAGTATTTGCTTTCAAAATCACCTTTTCTAGTCAGGTGAATGATTTGAGATATCATTTGAGCACAATAAACGATGCTACAAGAGAGGTCAAAGAATCTGCAAAATTGCGTCAGATAATGCAAACTATTCTTACACTGGGAAATGCATTAAACCAGGGTACTGCTCGAGGCTCCGCTATAGGTTTTAAGTTGGACAGCCTCCTTAAATTGTCTGACACTCGGGCAAGAAACAACAAAATGACTTTGATGCATTATCTATGTAAGCTCATTGCAGAGAAAATGCCAGAGTTACTTGATTTTGACAAGGACCTTGTTCATTTAGAAGCTGCCTCTAAGATTCAATTGAAAGCATTGGCCGAGGAAATGCAAGCAGTAAGTAAAGGTCTTGAAAAGGTGGAGCAAGAGCTAACTGCCTCAGAAAACGACGGTGTGATCTCTATTGGTTTCCAAAAGGTGCTGAAAAAGTTTTTGGATACGGCTGAAGCTGAAGTAAGGGCACTTATCTCCTTATATTCTGAAGTGGGGAGAAATGCGGACTCTCTATCACAGTACTTTGGCGAGGATCCAGCTCGGTGCCCTTTTGAGCAAGTGACTCAAATTTTGATAGTCTTCGTCAAGATGTTCAAGAAGTCACGAGAAGAAAATGAAAGGCAGGCTGATGCTGAAAAGAAAAAACTAGAGAAGGAAGCCATGAAAGAAAGAAGTTCAGTTAAAGCAAAGTGA 3759 44.21 MSLLSRFFYRRPPDGLLEFVERVYIFDSCFSTEALPDGMYQIYLHEIINELHEEFPDSSFLAFNFREGEKRSQFAEVLCAYDVTVMDYPRQYEGCPLLPLSLIQHFLRVCESWLLLGNQQNVILLHCERGGWPLLAFLLASFLIFRKMHSGERKTLEIVHREAPKGFLQLLSPLNPFPSQLRYLQYVARRNIVSEWPPPERALSLDCVILRGVPGFDAQNGCRPVIRIFGRNLFSKGGLSTKMLFSMPKKNKALRHYHQTDCDVIKIDVQCLVQGDVVLECSHLESEPEREVMMFRIMFNTAFIRSNILMLTSENLDILWDSKERYPKGFRAEVLFGEMENISPPRAPTSILNGEEKGGLPIEAFSRVQELFSGVEWIDNNDDAALWLLKNLSALSDVKELSRLQNKTSSYSSPIDSEEENNTSSTADSSDEVFDIITKPFVDPTSTNFTIPATVHSSELLSDKIGANEVNISSESPQSSDGFQDKIFSNKEPLPSSSPLLPPSNLPSTDASGKLDSNNMTPNVKVIPPPPPPPPFSLSHNKPHVETSSSSDSTTVTMHVRPPPPPPPPPQYPTINNPVTTTDSLSHVPKSSGAPPPPPPPLVPKSSSAPSPPPPPPPPIAKSSGAPPPPPPPPPVVLKSSSAPPPPPPHTVPKSSSVPLPPPQPPPPPPPPVSKSSSAPPPPPPPPPLKSSSAPPPPPTPPLKFSSAPPPPPPPPFSKFSSAPPPPPPPPFPKLSGAPPPPPPPPPPPPPQSNSGAPVPPPPPPSKPPSVELPSHGAKSTRPPPPPPPAKPFNANSLTSQGATPIPPPPPGSRESNVPPPLLPSAGRGKASLGSTAQGRGRVATGVVNAPKKNTLKPLHWVKVTRAMQGSLWADSQKQENQSRAPEIDISELESLFSAASASDGSGSKGGGRRGSNINKPEKVQLIDLRRAYNCEIMLSKIKIPLPDMINSVLALDSSALDIDQVENLIKFCPTREEMETLKGYTGDREMLGKCEQFFLELLKVPRIESKLRVFAFKITFSSQVNDLRYHLSTINDATREVKESAKLRQIMQTILTLGNALNQGTARGSAIGFKLDSLLKLSDTRARNNKMTLMHYLCKLIAEKMPELLDFDKDLVHLEAASKIQLKALAEEMQAVSKGLEKVEQELTASENDGVISIGFQKVLKKFLDTAEAEVRALISLYSEVGRNADSLSQYFGEDPARCPFEQVTQILIVFVKMFKKSREENERQADAEKKKLEKEAMKERSSVKAK* 1253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10422737 10431204 + Chy4G075210.1 Chy04g00803 224702

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00803 1252 MobiDBLite consensus disorder prediction 899 919 - -
Chy04g00803 1252 SMART PTEN_C2_2 198 338 IPR014020 -
Chy04g00803 1252 MobiDBLite consensus disorder prediction 524 539 - -
Chy04g00803 1252 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 200 339 IPR035892 -
Chy04g00803 1252 MobiDBLite consensus disorder prediction 472 495 - -
Chy04g00803 1252 MobiDBLite consensus disorder prediction 591 771 - -
Chy04g00803 1252 MobiDBLite consensus disorder prediction 503 523 - -
Chy04g00803 1252 MobiDBLite consensus disorder prediction 899 913 - -
Chy04g00803 1252 Coils Coil 1221 1248 - -
Chy04g00803 1252 Gene3D Protein tyrosine phosphatase superfamily 16 191 IPR029021 -
Chy04g00803 1252 MobiDBLite consensus disorder prediction 779 793 - -
Chy04g00803 1252 Gene3D - 197 342 - -
Chy04g00803 1252 MobiDBLite consensus disorder prediction 803 818 - -
Chy04g00803 1252 Gene3D Formin, FH2 domain 847 1232 IPR042201 -
Chy04g00803 1252 Coils Coil 1127 1154 - -
Chy04g00803 1252 MobiDBLite consensus disorder prediction 472 851 - -
Chy04g00803 1252 MobiDBLite consensus disorder prediction 559 575 - -
Chy04g00803 1252 Pfam C2 domain of PTEN tumour-suppressor protein 199 337 IPR014020 -
Chy04g00803 1252 MobiDBLite consensus disorder prediction 1223 1252 - -
Chy04g00803 1252 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Chy04g00803 1252 Pfam Formin Homology 2 Domain 851 1221 IPR015425 -
Chy04g00803 1252 MobiDBLite consensus disorder prediction 406 430 - -
Chy04g00803 1252 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 19 187 IPR029021 -
Chy04g00803 1252 SMART it6_source 557 1252 IPR015425 -
Chy04g00803 1252 ProSiteProfiles Formin homology-2 (FH2) domain profile. 846 1246 IPR015425 -
Chy04g00803 1252 MobiDBLite consensus disorder prediction 541 558 - -
Chy04g00803 1252 SUPERFAMILY Formin homology 2 domain (FH2 domain) 859 1240 - -
Chy04g00803 1252 PANTHER FORMIN-J 742 1248 - -
Chy04g00803 1252 PANTHER FORMIN-J 1 648 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00803 - - - csv:101217517 1104.35
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00803 Chy-Chr4:10422737 Chy07g00331 Chy-Chr7:2686037 4.84E-168 dispersed
Chy04g00803 Chy-Chr4:10422737 Chy02g02115 Chy-Chr2:25463736 1.81E-141 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy04g00807 . 181 1055 FH2 protein (formin) Gene Family AT3G25500 50.7 2.7e-187 652.9
Chy10g00056 . 467 943 FH2 protein (formin) Gene Family AT3G25500 65.6 3.6e-163 572.8
Chy11g00235 . 475 894 FH2 protein (formin) Gene Family AT3G25500 63.5 1.0e-141 501.5
Chy08g01021 . 488 880 FH2 protein (formin) Gene Family AT3G25500 51.2 2.7e-102 370.5
Chy04g00807 . 623 1072 FH2 protein (formin) Gene Family AT2G43800 58.7 6.4e-137 485.3
Chy11g00235 . 475 910 FH2 protein (formin) Gene Family AT2G43800 55.0 1.5e-125 447.6
Chy11g00585 . 322 622 FH2 protein (formin) Gene Family AT4G15200 52.2 5.1e-53 205.7
Chy04g01020 . 440 586 FH2 protein (formin) Gene Family AT4G15200 65.5 1.1e-47 188.0
Chy04g01020 . 4 949 FH2 protein (formin) Gene Family AT5G54650 50.7 2.2e-177 619.8
Chy11g00585 . 476 939 FH2 protein (formin) Gene Family AT5G54650 63.3 2.9e-161 566.2
Chy04g00807 . 629 1030 FH2 protein (formin) Gene Family AT5G54650 50.4 2.3e-102 370.5
Chy11g00235 . 36 913 FH2 protein (formin) Gene Family AT5G67470 57.3 3.7e-233 805.1
Chy04g00807 . 610 1072 FH2 protein (formin) Gene Family AT5G67470 58.7 7.9e-135 478.4
Chy10g00056 . 505 925 FH2 protein (formin) Gene Family AT5G67470 63.0 1.9e-128 457.2
Chy08g01021 . 488 882 FH2 protein (formin) Gene Family AT5G67470 51.9 2.9e-105 380.2
Chy10g00942 . 328 815 FH2 protein (formin) Gene Family AT1G59910 52.5 3.3e-128 456.4
Chy04g00807 . 650 1031 FH2 protein (formin) Gene Family AT5G48360 52.1 4.2e-100 362.8
Chy11g00235 . 496 871 FH2 protein (formin) Gene Family AT5G48360 50.3 3.9e-90 329.7
Chy11g00235 . 472 870 FH2 protein (formin) Gene Family AT3G05470 52.2 2.6e-106 383.6
Chy04g01020 . 446 860 FH2 protein (formin) Gene Family AT3G05470 50.7 5.8e-106 382.5
Chy04g00803 . 932 1243 FH2 protein (formin) Gene Family AT1G42980 50.2 6.1e-68 254.6
Chy04g00803 . 1 1250 FH2 protein (formin) Gene Family AT1G31810 69.2 0.0e+00 1230.7
Chy02g02475 CCT 1 376 FH2 protein (formin) Gene Family AT1G31810 54.5 1.7e-127 454.5
Chy07g00331 . 1075 1397 FH2 protein (formin) Gene Family AT5G07650 63.8 7.7e-110 395.2
Chy12g01523 CCT 1678 1959 FH2 protein (formin) Gene Family AT5G07650 70.9 1.7e-109 394.0
Chy02g02115 . 986 1305 FH2 protein (formin) Gene Family AT5G07650 62.0 1.5e-108 391.0
Chy04g00803 . 916 1247 FH2 protein (formin) Gene Family AT5G07650 59.0 1.8e-106 384.0
Chy12g01523 CCT 1601 1959 FH2 protein (formin) Gene Family AT5G07770 63.9 6.7e-119 424.9
Chy07g00331 . 1000 1389 FH2 protein (formin) Gene Family AT5G07770 58.6 1.5e-118 423.7
Chy02g02115 . 909 1297 FH2 protein (formin) Gene Family AT5G07770 56.7 2.0e-115 413.3
Chy04g00803 . 852 1241 FH2 protein (formin) Gene Family AT5G07770 55.2 2.2e-114 409.8
Chy07g00331 . 992 1400 FH2 protein (formin) Gene Family AT3G32400 74.8 3.0e-168 588.6
Chy02g02115 . 893 1306 FH2 protein (formin) Gene Family AT3G32400 66.1 7.6e-148 520.8
Chy04g00803 . 852 1246 FH2 protein (formin) Gene Family AT3G32400 66.2 2.4e-141 499.2
Chy12g01523 CCT 1571 1962 FH2 protein (formin) Gene Family AT3G32400 57.8 6.1e-121 431.4
Chy07g00331 . 1 1400 FH2 protein (formin) Gene Family AT2G25050 52.9 0.0e+00 1152.9
Chy02g02115 . 47 1306 FH2 protein (formin) Gene Family AT2G25050 50.7 4.5e-284 974.5
Chy02g02475 CCT 1 374 FH2 protein (formin) Gene Family AT2G25050 63.6 9.5e-141 498.4
Chy07g00331 . 1001 1390 FH2 protein (formin) Gene Family AT5G07780 54.4 3.3e-105 379.0
Chy12g01523 CCT 1602 1959 FH2 protein (formin) Gene Family AT5G07780 56.7 2.7e-102 369.4
Chy04g00803 . 853 1242 FH2 protein (formin) Gene Family AT5G07780 52.5 1.3e-101 367.1
Chy02g02115 . 916 1297 FH2 protein (formin) Gene Family AT5G07780 53.3 4.2e-100 362.1
Chy02g02475 CCT 1 662 FH2 protein (formin) Gene Family AT5G07740 59.3 7.6e-197 685.3
Chy07g00331 . 1074 1397 FH2 protein (formin) Gene Family AT5G07760 65.5 4.9e-110 396.0
Chy02g02115 . 985 1305 FH2 protein (formin) Gene Family AT5G07760 64.4 8.4e-110 395.2
Chy12g01523 CCT 1677 1959 FH2 protein (formin) Gene Family AT5G07760 71.4 7.1e-109 392.1
Chy04g00803 . 926 1247 FH2 protein (formin) Gene Family AT5G07760 60.4 1.1e-104 378.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010762 0 1 1 0 0 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 0 1 1 3 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g00803 Chy_Chr04 FPKM 0.0 0.0 0.0 0.0 0.099305 0.0 0.195536 0.0 0.0 0.0