Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00817 ATGGCCAAAACAGGTGTCTTTGATTCTGATCCTACTCTTATCGGCAAAGCCACTGACTTGAAGAAAGAGTTACAAACACTCATTCTTGCTATCATTGATGACGACAATTACTCCACCGACACCATCGATAACGCTATACACATTCTTTCTGCTCTCAAGGACTTGAAACTCAGGAAGAGATCCCGTTCTTCTTCTAATCTTTTCCACAATCTCATTTCTCCACAAGAATTTCGTTGTCCTCTTTCTAGAGAACTCATGAGAGATCCTGTCATTCTCTCTACTGGCGAGACATATGACAGACCTTTCATTCAGAAATGGTTAAATTCAGGGAACAGGACTTGCCCTAGAACTCAGCAAGTTCTTTCGCACACCAATCTCACTCCCAATCACTTGATTCGTGAAATGATATCTCAGTGGTGTGCAACTCGGGGAATTGAGTTGCAAGATCGTGTCCGTGTTCATTATCTTGATGATGATGTCATAACAGAGGCTGATCGAGACCGTTTTCTCATGTTACTTGAGAAAATGTCTTTGACAGTATCTGAACAGAAAGAAGCTGCAAAGGAGCTACGAATGTTGACGAAGCGAATGCCTTCGTTTCGAGCACTTTTTGGTGAGTCGCTTGATGCCATATCTTTGTTGCTTAGTCCCCTTTGTGGAGATAAGTCACAAAGTAGTAGTAGTATTCACACGGATCTGCAAGAAGACGTGATCACAACCCTCTTGAATTTGTCAATCCATGACAACAACAAGAAACTTGTTGCTGAAACACCCTATGCAATACCGCTTCTAATGGAAGCGTTGAGATCAGGAACCATGGAAACAAGGAGCAATGCAGCTGCAGCCCTATTTACTCTATCTGCCCTCGACCCAAACAAAGCAATAATTGGGAAAGCTGGTGCCTTGAAACCACTTATCGAGCTTTTGGACTTGGGGCATCCCTTATCAATCAAAGATGCTGCTTCAGCAATATTCAATCTTTGTATACTTCATGAAAACAAAGCAAGAGCCGTGCGTGATGGTGCAGTTCGAGTGATTCTGAAAAAGATCACGAGCCAGATGCATGTCGATGAGTTGTTGGCTATTCTTGCAATGCTATCATGCCATCAAAGAGCTATTGAAGAAATTGGAGAACTTGGAGCTGTCCCATTCTTACTCAGAATTATCAGGGAAAGTTCTTGTTCACGTAACAAGGAAAATTGCATTGTGATCATCCATTCTGTCTGCTTATATGATCGAACCAAATGGAAGGATATGAGGGAAGAAGAGAAATGCTATCGAACTATCTCTGAACTTGCTCAGAATGGGACTTCAAGGGCCAAGAGAAAAGCAAGTGGCATACTTGAAAGAATAAACAGGGTAGTTAATATGACCCATACGGCCTAA 1386 42.14 MAKTGVFDSDPTLIGKATDLKKELQTLILAIIDDDNYSTDTIDNAIHILSALKDLKLRKRSRSSSNLFHNLISPQEFRCPLSRELMRDPVILSTGETYDRPFIQKWLNSGNRTCPRTQQVLSHTNLTPNHLIREMISQWCATRGIELQDRVRVHYLDDDVITEADRDRFLMLLEKMSLTVSEQKEAAKELRMLTKRMPSFRALFGESLDAISLLLSPLCGDKSQSSSSIHTDLQEDVITTLLNLSIHDNNKKLVAETPYAIPLLMEALRSGTMETRSNAAAALFTLSALDPNKAIIGKAGALKPLIELLDLGHPLSIKDAASAIFNLCILHENKARAVRDGAVRVILKKITSQMHVDELLAILAMLSCHQRAIEEIGELGAVPFLLRIIRESSCSRNKENCIVIIHSVCLYDRTKWKDMREEEKCYRTISELAQNGTSRAKRKASGILERINRVVNMTHTA* 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10644899 10646686 + Chy4G075350.1 Chy04g00817 224716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00817 461 SMART Ubox_2 76 139 IPR003613 GO:0004842|GO:0016567
Chy04g00817 461 SUPERFAMILY ARM repeat 182 451 IPR016024 -
Chy04g00817 461 CDD RING-Ubox_PUB 77 119 IPR045210 -
Chy04g00817 461 Gene3D - 160 454 IPR011989 -
Chy04g00817 461 PANTHER U BOX DOMAIN-CONTAINING 6 459 - -
Chy04g00817 461 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 6 459 - -
Chy04g00817 461 Pfam U-box domain 74 143 IPR003613 GO:0004842|GO:0016567
Chy04g00817 461 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 146 IPR013083 -
Chy04g00817 461 SUPERFAMILY RING/U-box 74 149 - -
Chy04g00817 461 Pfam Armadillo/beta-catenin-like repeat 290 328 IPR000225 GO:0005515
Chy04g00817 461 SMART arm_5 368 410 IPR000225 GO:0005515
Chy04g00817 461 SMART arm_5 289 329 IPR000225 GO:0005515
Chy04g00817 461 SMART arm_5 247 288 IPR000225 GO:0005515
Chy04g00817 461 ProSiteProfiles U-box domain profile. 72 146 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00817 Chy-Chr4:10644899 Chy05g00730 Chy-Chr5:9934829 6.88E-118 dispersed
Chy04g00817 Chy-Chr4:10644899 Chy12g00185 Chy-Chr12:2245357 2.07E-87 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00817 - - csv:101215688 875.93