Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00851 ATGGGCGGCCGCTCGGTGTTCACCTTGGCTGAGGTTGCTTCCCATGACAATCGCAACGATTGCTGGTTGATCATTGAAGACAAGGTGTATGATGTAACAAAATTCCTTGAAGAACATCCTGGTGGTGATGAAGTCTTGTTGTCAGGTGTTGGTAAGGATGCAACCAATGATTTTTTCGATGTTGGGCACAGTAGCACTGCCAGAGCAATGATGGAAGAATTTTATGTAGGTGATATCGATAGCTCAACTATTCCTGCAAAAAGAGAGTATACTCCTCCAAAGCAACCCCTATACAACCAAGACAAGACACCAGAATTCATTATCAAGGTCCTCCAGTTTCTTGCTCCCTTGGTAATTTTGGGCTTGGCTTTTGGCATCCACCTCTATATCAAAACAACTTAA 402 43.53 MGGRSVFTLAEVASHDNRNDCWLIIEDKVYDVTKFLEEHPGGDEVLLSGVGKDATNDFFDVGHSSTARAMMEEFYVGDIDSSTIPAKREYTPPKQPLYNQDKTPEFIIKVLQFLAPLVILGLAFGIHLYIKTT* 134
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11107494 11109420 + Chy4G075690.1 Chy04g00851 224750

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00851 133 PANTHER - 1 131 - -
Chy04g00851 133 Pfam Cytochrome b5-like Heme/Steroid binding domain 8 79 IPR001199 -
Chy04g00851 133 Gene3D - 3 85 IPR036400 -
Chy04g00851 133 PANTHER CYTOCHROME B5 1 131 - -
Chy04g00851 133 SMART Cyt_b5_2 7 80 IPR001199 -
Chy04g00851 133 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 4 80 IPR001199 -
Chy04g00851 133 PRINTS Cytochrome B5 signature 39 53 IPR001199 -
Chy04g00851 133 PRINTS Cytochrome B5 signature 54 61 IPR001199 -
Chy04g00851 133 PRINTS Cytochrome B5 signature 29 39 IPR001199 -
Chy04g00851 133 PRINTS Cytochrome B5 signature 67 79 IPR001199 -
Chy04g00851 133 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 35 42 IPR018506 GO:0020037
Chy04g00851 133 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 5 89 IPR036400 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00851 K23490 CYB5; cytochrome b5 - csv:101212882 269.24
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00851 Chy-Chr4:11107494 Chy05g00551 Chy-Chr5:5995328 2.14E-64 dispersed
Chy05g01399 Chy-Chr5:18045184 Chy04g00851 Chy-Chr4:11107494 7.03E-21 transposed
Chy04g00851 Chy-Chr4:11107494 Chy06g00372 Chy-Chr6:2493956 4.57E-67 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy06g00372 . 1 133 NADPH P450 reductases AT5G53560 68.4 1.4e-51 199.1
Chy05g00551 . 1 135 NADPH P450 reductases AT5G53560 65.9 9.9e-50 193.0
Chy04g00851 . 4 134 NADPH P450 reductases AT5G53560 63.4 1.5e-45 179.1
Chy09g01458 . 527 638 NADPH P450 reductases AT5G53560 74.1 8.1e-44 173.3
Chy06g00372 . 1 132 NADPH P450 reductases AT5G48810 64.9 7.4e-48 186.8
Chy05g00551 . 1 134 NADPH P450 reductases AT5G48810 62.5 1.3e-47 186.0
Chy04g00851 . 2 132 NADPH P450 reductases AT5G48810 60.9 1.7e-44 175.6
Chy06g00372 . 22 135 NADPH P450 reductases AT2G32720 84.2 5.2e-51 197.2
Chy05g00551 . 13 135 NADPH P450 reductases AT2G32720 73.4 4.2e-48 187.6
Chy04g00851 . 21 132 NADPH P450 reductases AT2G32720 69.6 1.1e-40 162.9
Chy09g01458 . 533 636 NADPH P450 reductases AT2G32720 68.3 3.0e-38 154.8
Chy03g00719 . 1 130 NADPH P450 reductases AT1G26340 54.5 6.7e-38 153.7
Chy08g00202 CCT 2 282 NADPH P450 reductases AT5G17770 81.5 2.2e-131 465.3
Chy04g01700 CCT 2 281 NADPH P450 reductases AT5G17770 76.4 4.4e-124 441.0
Chy05g00027 . 6 279 NADPH P450 reductases AT5G17770 75.2 3.9e-117 417.9
Chy06g00372 . 1 133 NADPH P450 reductases AT5G53560 68.4 1.4e-51 199.1
Chy05g00551 . 1 135 NADPH P450 reductases AT5G53560 65.9 9.9e-50 193.0
Chy04g00851 . 4 134 NADPH P450 reductases AT5G53560 63.4 1.5e-45 179.1
Chy09g01458 . 527 638 NADPH P450 reductases AT5G53560 74.1 8.1e-44 173.3
Chy06g00372 . 1 132 NADPH P450 reductases AT5G48810 64.9 7.4e-48 186.8
Chy05g00551 . 1 134 NADPH P450 reductases AT5G48810 62.5 1.3e-47 186.0
Chy04g00851 . 2 132 NADPH P450 reductases AT5G48810 60.9 1.7e-44 175.6
Chy06g00372 . 22 135 NADPH P450 reductases AT2G32720 84.2 5.2e-51 197.2
Chy05g00551 . 13 135 NADPH P450 reductases AT2G32720 73.4 4.2e-48 187.6
Chy04g00851 . 21 132 NADPH P450 reductases AT2G32720 69.6 1.1e-40 162.9
Chy09g01458 . 533 636 NADPH P450 reductases AT2G32720 68.3 3.0e-38 154.8
Chy03g00719 . 1 130 NADPH P450 reductases AT1G26340 54.5 6.7e-38 153.7
Chy08g00202 CCT 2 282 NADPH P450 reductases AT5G17770 81.5 2.2e-131 465.3
Chy04g01700 CCT 2 281 NADPH P450 reductases AT5G17770 76.4 4.4e-124 441.0
Chy05g00027 . 6 279 NADPH P450 reductases AT5G17770 75.2 3.9e-117 417.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000252 4 9 3 5 3 5 9 4 4 3 4 4 8 5 5 9 5 6 9 4 5 4 5 5 4 4 4 10 5 2 156
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g00851 Chy_Chr04 FPKM 6.58914 7.322394 10.863282 12.432871 9.538025 8.316183 8.906478 1.342703 1.565058 1.559092