Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00894 ATGCCCTACCGATATATTGAGAATGAGCATGCTGTTGATAATCCAGAGGAAATTGCATCAATGGTTGATTTGAGCATTCGCAATAGCACAGAGAGGAGGAACTTGGGGTTCTTCTCTTGTGGAACAGGAAATCCAATAGATGACTGTTGGCGTTGTGACCCACGTTGGCAATTGCGGCGAAAACACTTGGCCAACTGCGGCATTGGGTTCGGCCGTAATGCAGTTGGTGGCCGTGATGGTCGATACTACGTCGTCTCCGATCCTGGTGACGACGATCCTATCAATCCCAGACCAGGGACCCTTCGCCATGCAGTGATTCAAGACAGGCCACTGTGGATTGTGTTCAAAAGAGATATGGTTATCACTCTAAAACAAGAACTCATCATGAACAGTTTCAAGACAATTGATGGCCGTGGTGCTAATGTACACATTGCTTATGGAGCTTGTATTACGATCCAATTCATAACCAACGTCATTATTCATGGTTTGCATATTCACGACTGCAAGCCGACGGGCAATGCCATGGTTCGAAGCTCACCAAGTCATTATGGATGGAGGACAATGGCTGATGGTGATGGCATTTCCATTTTTGGGTCGAGTCATATTTGGATTGACCATAATTCTCTTTCTTCCTGTGCTGATGGGCTCATTGATGCTGTCATGGGATCAACTGCCATCACAATTTCTAACAACTACTTCACCCACCACAATGAGGTGATGCTCTTGGGTCATAGTGATTCTTATGTAAGAGACAAGCAAATGCAAGTCACCATTGCTTATAACCATTTTGGGGAAGGTCTCATCCAAAGAATGCCAAGGTGTAGACATGGGTACTTCCACGTAGTAAACAATGACTACACTCACTGGGTAATGTATGCCATCGGTGGAAGTGCTGATCCCACCATTAATAGCCAAGGCAACAGATATCTTGCCCCTGCCAACCCTTTTGCCAAAGAGGTAACAAAGAGAGTTGAGACACATAATGGTGTATGGAAGCACTGGAATTGGAGATCAGAGGGAGATCTTATGCTCAATGGAGCCTACTTCACTCCATCAGGAGCTGGTGCAGCAGCCAGTTATGCAAGAGCCTCAAGCTTAGGAGCTAAATCCTCTTCCTTGGTGGGCTCTATTACTTCAAATGCAGGTGCCCTTGCTTGTCGTAGGGGATACCGGTGTTAA 1179 46.06 MPYRYIENEHAVDNPEEIASMVDLSIRNSTERRNLGFFSCGTGNPIDDCWRCDPRWQLRRKHLANCGIGFGRNAVGGRDGRYYVVSDPGDDDPINPRPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGANVHIAYGACITIQFITNVIIHGLHIHDCKPTGNAMVRSSPSHYGWRTMADGDGISIFGSSHIWIDHNSLSSCADGLIDAVMGSTAITISNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWVMYAIGGSADPTINSQGNRYLAPANPFAKEVTKRVETHNGVWKHWNWRSEGDLMLNGAYFTPSGAGAAASYARASSLGAKSSSLVGSITSNAGALACRRGYRC* 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12178723 12183448 + Chy4G076120.1 Chy04g00894 224793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00894 392 SUPERFAMILY Pectin lyase-like 21 386 IPR011050 -
Chy04g00894 392 SMART amb_all 118 315 IPR002022 -
Chy04g00894 392 PANTHER PECTATE LYASE 18-RELATED 8 389 IPR045032 GO:0030570
Chy04g00894 392 PANTHER PECTATE LYASE 8 389 - -
Chy04g00894 392 Pfam Pectate lyase 126 307 IPR002022 -
Chy04g00894 392 PRINTS Pollen allergen Amb family signature 363 386 IPR018082 -
Chy04g00894 392 PRINTS Pollen allergen Amb family signature 292 311 IPR018082 -
Chy04g00894 392 PRINTS Pollen allergen Amb family signature 270 289 IPR018082 -
Chy04g00894 392 PRINTS Pollen allergen Amb family signature 126 142 IPR018082 -
Chy04g00894 392 PRINTS Pollen allergen Amb family signature 66 83 IPR018082 -
Chy04g00894 392 PRINTS Pollen allergen Amb family signature 90 115 IPR018082 -
Chy04g00894 392 PRINTS Pollen allergen Amb family signature 190 211 IPR018082 -
Chy04g00894 392 PRINTS Pollen allergen Amb family signature 334 358 IPR018082 -
Chy04g00894 392 Gene3D - 43 385 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00894 Chy-Chr4:12178723 Chy05g00262 Chy-Chr5:2297202 0 dispersed
Chy04g00894 Chy-Chr4:12178723 Chy06g00395 Chy-Chr6:2675533 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00894 K01728 - csv:101207204 817.764