Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00939 ATGAAAAGGGTAAAACAGAGGAATCAAGAACAGAGAGATCAGAAACATCCAATTTACAGAGGCGTACGAAGAAGGAGTTGGGGTAAATGGGTGTCGGAGATCCGGCAACCGAGGAAGAAATCTCGGATTTGGCTGGGGACTTTCACGACGGCGGAGATGGCGGCACGTGCACACGACGTGGCGGCGCTCAGTATCAAAGGGGATTCCGCCAAGGCCATTCTCAATTTCCCTCAGCTCGCCGGTTTGCTTCCCCGACCGGTGTCGTTAATGCCGAGGGATATTCAAGAGGCGGCTGCCAAGGCGGCGGCGATGGTGGATTTTGATTCCGAGACGGTGTCGTTTTCGAATGGTGAAGAAGGGTCAGATGAATTGGCGGAAATTGTGGAATTACCCAATATTGAAGAGGATATAAGAGCTGAGTCGTGGAACGAGTTCGAGTTTATTGACTCCGTTGATTGGTGGGGAAATCCGCCGTTCACGGCAGCGGAAATGGATTTCTGTGCGGTGTTTTCAGATGAGAGTCAATATAATAATGAGGGAAATGAGTTTGGTTCTATAGGTCGAAACAATTGTGAAAGTTCAAAGTTTATGGCATAA 597 48.91 MKRVKQRNQEQRDQKHPIYRGVRRRSWGKWVSEIRQPRKKSRIWLGTFTTAEMAARAHDVAALSIKGDSAKAILNFPQLAGLLPRPVSLMPRDIQEAAAKAAAMVDFDSETVSFSNGEEGSDELAEIVELPNIEEDIRAESWNEFEFIDSVDWWGNPPFTAAEMDFCAVFSDESQYNNEGNEFGSIGRNNCESSKFMA* 199
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13509679 13517238 - Chy4G076570.1 Chy04g00939 224838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00939 198 ProSiteProfiles AP2/ERF domain profile. 18 77 IPR001471 GO:0003700|GO:0006355
Chy04g00939 198 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
Chy04g00939 198 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Chy04g00939 198 Gene3D AP2/ERF domain 18 78 IPR036955 GO:0003700|GO:0006355
Chy04g00939 198 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 6 173 - -
Chy04g00939 198 SMART rav1_2 18 83 IPR001471 GO:0003700|GO:0006355
Chy04g00939 198 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 6 173 - -
Chy04g00939 198 Pfam AP2 domain 17 67 IPR001471 GO:0003700|GO:0006355
Chy04g00939 198 CDD AP2 17 77 IPR001471 GO:0003700|GO:0006355
Chy04g00939 198 SUPERFAMILY DNA-binding domain 18 78 IPR016177 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g02093 Chy-Chr1:25646299 Chy04g00939 Chy-Chr4:13509679 1.07E-54 dispersed
Chy02g01885 Chy-Chr2:21702613 Chy04g00939 Chy-Chr4:13509679 3.55E-50 dispersed
Chy04g00939 Chy-Chr4:13509679 Chy06g02066 Chy-Chr6:24840708 1.93E-37 dispersed
Chy04g00939 Chy-Chr4:13509679 Chy05g01389 Chy-Chr5:17949100 9.78E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17844 PF00847 AP2 9.00E-14 CL0081 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00939 K09286 - csv:101222354 347.436