Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00949 ATGTTCGACGTATTGCCTGAAGATGTAACCGTTGAAGGGAATGGTCAGGACTATGTGTTCATCAGGAAGAACTGCTCCTGTGCCTCTGGGTTGAAGAAATACATAACCAACACCACTTTTACTATCAAATCCAATCGCGGTCGTGTATATGGCATAGTCATGGAAGCGTATGATGGGCTTGCGTTGTTACCCAACACAACTCGAATGGCGAGGAACGGCGCTGTTGTGTCTTTGAGATTGTTTTGTGCTTGTTCAAGCGGGTTGTGGAACTATTTGATGAGCTATGTGATGAGAGATGGTGATACCATAGAGTCTTTGGCTAGTCGATTTGGGGTTAGTATGGATAGCATTGAGTCGGTGAATGGAATTGAAAATCCCGGTAATGTTACTGCGGGCGCTTTGTATTACATTCCCTTGAATTCGGTTCCTGGAGATCCTTATCCGTTGGAGACGAACATTTCTCCTGCTCCTACTCCAGCTCCTTCCTATACTCCGAACAATTTCTCAGATAATGCTGAGAGCCCCAAACGTCATCCTCCATATATATGGATCGTTGGAAGTTTGGGAATTATTCTTGTTCTGATTTTGGTAGGCATAGTAGGTTATGCTTGCTTCAGGTGGTTGAAATGCTTTTCTAGATCAAGGAGTAGCCACTCCAAAGATCCCATTGGAAAGGTTTCCCACAAGTTCCATATTCTTGGGAAGTCAAGTTTCTGCTGTGCTTCAGGAAGGCATATTTGCTGCAGTTCTGCAGATTGGAAGCAAGCCAACAGGGAATCCAGTGACAACCAGAGTGCAATTCCAAAAGCTATTGAGAACAATGTATTTGATGTGGACAAACCTGTGGTTTTTTCATGCGAAGAAATTGTTTCCTCAACCGATAGTTTCTCTGATTCAAGTCTACTTGGCCATGGAACTTATGGTTCAGTGTACTATGGCATCCTGCGTGATCAGGAAGTTGCTATAAAAAGAATGACTGCAACAAAAACTAAAGAGTTTATGGCAGAGATGAAAGTCCTCTGCAAGGTTCATCATGCTAACCTGGTAGAATTGATTGGTTATGCAGCCAGTGAGGATGAGTTGTTTCTTATTTATGAATATGCTCAAAAAGGTCCCCTCAAAAGCCATTTACATGATCCTCTGAACAAGGGTCATACGCCACTATCTTGGATTATGAGACTCCAAATTGCTTTGGATGCTGCGAGAGGTCTCGAGTACATTCATGAGCATACTAAAACTCATTATGTCCATAGAGATATTAAGACAAGCAACATCTTACTTGATGGTTCTTTTAGAGCAAAGATTTCTGACTTTGGGTTGGCCAAGCTTGTTGGAAAAACAAATGAGGGTGAAGCTACAGTAACCAAAGTTGTTGGTACATACGGTTATTTGGCTCCCGAATATTTGAGTAATGGTCTTGCCACAACCAAAAGTGATGTGTATGCTTATGGTGTCGTTCTTTTTGAGCTTATAACTGGAAAGGAGGCAATTATACGAACTGAGGGGACAACTATGAAGAATCCTGAAAGACGGTCACTAGCATCTATTATGTTAGCTGTTCTTCGGAATGCACCTGATCCCATGAATATGGCAAGTCTGAAAGATCAAGTTGATCCAAGTATGATGGACTTGTATCCTCATGACTGTCTATTTAAGGTGGCCATGTTGGCAAAGCAGTGTGTAGATGAAGATTCAATCCTACGTCCTGACATGAAGCAAGTTGTGATATCCTTGTCACAAATCCTACTCTCTTCGATCGAGTGGGAAGCCACTCTAGCTGGTAACAGCCAAGTTTTTAGTGGTCTTGTCCAAGGAAGATAG 1821 42.34 MFDVLPEDVTVEGNGQDYVFIRKNCSCASGLKKYITNTTFTIKSNRGRVYGIVMEAYDGLALLPNTTRMARNGAVVSLRLFCACSSGLWNYLMSYVMRDGDTIESLASRFGVSMDSIESVNGIENPGNVTAGALYYIPLNSVPGDPYPLETNISPAPTPAPSYTPNNFSDNAESPKRHPPYIWIVGSLGIILVLILVGIVGYACFRWLKCFSRSRSSHSKDPIGKVSHKFHILGKSSFCCASGRHICCSSADWKQANRESSDNQSAIPKAIENNVFDVDKPVVFSCEEIVSSTDSFSDSSLLGHGTYGSVYYGILRDQEVAIKRMTATKTKEFMAEMKVLCKVHHANLVELIGYAASEDELFLIYEYAQKGPLKSHLHDPLNKGHTPLSWIMRLQIALDAARGLEYIHEHTKTHYVHRDIKTSNILLDGSFRAKISDFGLAKLVGKTNEGEATVTKVVGTYGYLAPEYLSNGLATTKSDVYAYGVVLFELITGKEAIIRTEGTTMKNPERRSLASIMLAVLRNAPDPMNMASLKDQVDPSMMDLYPHDCLFKVAMLAKQCVDEDSILRPDMKQVVISLSQILLSSIEWEATLAGNSQVFSGLVQGR* 607
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13695507 13699815 - Chy4G076670.1 Chy04g00949 224848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00949 606 SMART serkin_6 296 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy04g00949 606 ProSitePatterns Serine/Threonine protein kinases active-site signature. 415 427 IPR008271 GO:0004672|GO:0006468
Chy04g00949 606 SMART LysM_2 94 138 IPR018392 -
Chy04g00949 606 Gene3D LysM domain 90 143 IPR036779 -
Chy04g00949 606 ProSiteProfiles Protein kinase domain profile. 296 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy04g00949 606 PANTHER BNAA06G02020D PROTEIN 1 606 - -
Chy04g00949 606 ProSiteProfiles LysM domain profile. 93 137 IPR018392 -
Chy04g00949 606 Gene3D Phosphorylase Kinase; domain 1 268 367 - -
Chy04g00949 606 SUPERFAMILY Protein kinase-like (PK-like) 278 578 IPR011009 -
Chy04g00949 606 ProSitePatterns Protein kinases ATP-binding region signature. 302 323 IPR017441 GO:0005524
Chy04g00949 606 CDD LysM 94 137 IPR018392 -
Chy04g00949 606 Pfam Protein tyrosine and serine/threonine kinase 300 576 IPR001245 GO:0004672|GO:0006468
Chy04g00949 606 SUPERFAMILY LysM domain 93 138 IPR036779 -
Chy04g00949 606 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 1 606 IPR044812 GO:0019199|GO:0045087
Chy04g00949 606 Pfam LysM domain 95 132 IPR018392 -
Chy04g00949 606 Gene3D Transferase(Phosphotransferase) domain 1 369 592 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00448 Chy-Chr1:3209329 Chy04g00949 Chy-Chr4:13695507 8.37E-87 dispersed
Chy04g00949 Chy-Chr4:13695507 Chy10g00876 Chy-Chr10:14569619 2.71E-79 dispersed
Chy10g01311 Chy-Chr10:17512339 Chy04g00949 Chy-Chr4:13695507 9.09E-40 dispersed
Chy11g00825 Chy-Chr11:11787942 Chy04g00949 Chy-Chr4:13695507 4.85E-34 dispersed
Chy04g00949 Chy-Chr4:13695507 Chy05g01369 Chy-Chr5:17799292 1.57E-63 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71194 PF07714 PK_Tyr_Ser-Thr 1.70E-48 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00949 - - csv:101213624 1166.76