Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00956 ATGTCTTGGCAATCTTACATTGACGATCAGTTGATGTATGAGGTTGATGGCCAACATCTCAAAGCCGCTGCTATAATCGGTAACGACGGTTCTGTTTGGGCTCAGAGTTCCGCTTTCCCTCAGTACAAGCCAGAAGAGATTTCTGCCATTATGAAGGATTTTGATGAGCCTGGATCTCTTGCCCCGACTGGGTTGCACCTTGGTGGATCAAAGTACATGGTTATTCAGGGAGAATCTGGAGCTGTTATCCGTGGAAAGAAGGGCACTTCTGGGATCACTGTAAAGAAAACAACTCAAGCACTGATTTTTGGATTATATGATGAACCCATGACTCCAGGACAGTGCAACGTGATTGTTGAGAAGTTGGGAGATTACCTGATTGATCAAGGCCTCTAA 396 45.2 MSWQSYIDDQLMYEVDGQHLKAAAIIGNDGSVWAQSSAFPQYKPEEISAIMKDFDEPGSLAPTGLHLGGSKYMVIQGESGAVIRGKKGTSGITVKKTTQALIFGLYDEPMTPGQCNVIVEKLGDYLIDQGL* 132
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13852717 13854346 - Chy4G076740.1 Chy04g00956 224855

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00956 131 Pfam Profilin 1 130 IPR005455 GO:0003779
Chy04g00956 131 PANTHER PROFILIN 1 131 - -
Chy04g00956 131 SUPERFAMILY Profilin (actin-binding protein) 2 130 IPR036140 -
Chy04g00956 131 CDD PROF 2 130 IPR005455 GO:0003779
Chy04g00956 131 PRINTS Profilin signature 3 12 IPR005455 GO:0003779
Chy04g00956 131 PRINTS Profilin signature 21 30 IPR005455 GO:0003779
Chy04g00956 131 PRINTS Profilin signature 40 60 IPR005455 GO:0003779
Chy04g00956 131 PRINTS Profilin signature 64 78 IPR005455 GO:0003779
Chy04g00956 131 PRINTS Profilin signature 100 113 IPR005455 GO:0003779
Chy04g00956 131 PRINTS Profilin signature 113 130 IPR005455 GO:0003779
Chy04g00956 131 SMART prof_2 1 131 IPR005455 GO:0003779
Chy04g00956 131 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779
Chy04g00956 131 Gene3D Dynein light chain 2a, cytoplasmic 1 131 - -
Chy04g00956 131 PANTHER PROFILIN 1 131 IPR005455 GO:0003779
Chy04g00956 131 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779
Chy04g00956 131 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779
Chy04g00956 131 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779
Chy04g00956 131 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779
Chy04g00956 131 PRINTS Plant profilin signature 84 99 IPR005455 GO:0003779
Chy04g00956 131 PRINTS Plant profilin signature 104 117 IPR005455 GO:0003779
Chy04g00956 131 PRINTS Plant profilin signature 117 130 IPR005455 GO:0003779
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00956 K05759 PFN; profilin - csv:101218089 268.085
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00956 Chy-Chr4:13852717 Chy05g01410 Chy-Chr5:18102671 6.89E-76 dispersed
Chy04g00956 Chy-Chr4:13852717 Chy05g01409 Chy-Chr5:18094689 5.13E-73 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g263 . . . . . . . . Cmo08g00707 Cmo17g00727 Cma01g00091 . Car01g00075 Car14g01139 Sed06g2183 Cpe12g00643 Cpe17g00524 Bhi01g03373 Tan04g2694 Cmetu04g1863 Lac11g0782 Hepe02g1450 . . Cla07g01272 Cam07g1227 Cec07g1455 Cco07g1416 Clacu07g1338 Cmu07g1316 Cre07g1699 . Cone17ag0127 . . Lsi02g02980 . Chy04g00956 . . . . . . . . . . Cmo01g00092 Cmo14g01321 Cma08g00743 Cma17g00758 Car08g00630 Car17g00703 Cpe02g01699 Cpe03g01090 Bhi09g00471 . . . . . . Cla09g00022 Cam09g0024 . Cco09g0025 . . . Lsi07g00531 Csa03g02348 . Cme04g01148
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy08g00757 . 1 378 Cytoskeleton Gene Families AT2G37620 97.1 1.9e-215 745.0
Chy04g01779 . 1 378 Cytoskeleton Gene Families AT2G37620 96.8 5.5e-215 743.4
Chy02g01031 . 19 396 Cytoskeleton Gene Families AT2G37620 95.5 1.8e-213 738.4
Chy01g00298 . 1 378 Cytoskeleton Gene Families AT2G37620 94.4 1.1e-212 735.7
Chy09g00409 CCT 1 378 Cytoskeleton Gene Families AT2G37620 95.8 1.5e-212 735.3
Chy10g00547 . 1 402 Cytoskeleton Gene Families AT2G37620 90.3 1.5e-209 725.3
Chy11g00060 . 1 356 Cytoskeleton Gene Families AT2G37620 95.8 5.0e-200 693.7
Chy09g00409 CCT 1 378 Cytoskeleton Gene Families AT5G59370 96.8 2.7e-214 741.1
Chy04g01779 . 1 378 Cytoskeleton Gene Families AT5G59370 97.1 4.7e-214 740.3
Chy08g00757 . 1 378 Cytoskeleton Gene Families AT5G59370 96.8 1.8e-213 738.4
Chy02g01031 . 19 396 Cytoskeleton Gene Families AT5G59370 94.4 2.4e-210 728.0
Chy01g00298 . 1 378 Cytoskeleton Gene Families AT5G59370 93.9 4.1e-210 727.2
Chy10g00547 . 1 402 Cytoskeleton Gene Families AT5G59370 90.8 1.2e-209 725.7
Chy11g00060 . 1 356 Cytoskeleton Gene Families AT5G59370 94.7 6.7e-197 683.3
Chy09g00409 CCT 1 378 Cytoskeleton Gene Families AT3G46520 97.1 1.2e-214 742.3
Chy04g01779 . 1 378 Cytoskeleton Gene Families AT3G46520 97.4 2.1e-214 741.5
Chy08g00757 . 1 378 Cytoskeleton Gene Families AT3G46520 97.1 7.9e-214 739.6
Chy02g01031 . 19 396 Cytoskeleton Gene Families AT3G46520 94.7 1.1e-210 729.2
Chy01g00298 . 1 378 Cytoskeleton Gene Families AT3G46520 94.2 1.8e-210 728.4
Chy10g00547 . 1 402 Cytoskeleton Gene Families AT3G46520 91.0 5.3e-210 726.9
Chy11g00060 . 1 356 Cytoskeleton Gene Families AT3G46520 94.9 3.0e-197 684.5
Chy04g01779 . 1 378 Cytoskeleton Gene Families AT3G12110 97.1 2.5e-215 744.6
Chy08g00757 . 1 378 Cytoskeleton Gene Families AT3G12110 96.8 9.4e-215 742.7
Chy09g00409 CCT 1 378 Cytoskeleton Gene Families AT3G12110 96.0 2.3e-213 738.0
Chy02g01031 . 19 396 Cytoskeleton Gene Families AT3G12110 95.5 6.7e-213 736.5
Chy01g00298 . 1 378 Cytoskeleton Gene Families AT3G12110 95.2 8.8e-213 736.1
Chy10g00547 . 1 402 Cytoskeleton Gene Families AT3G12110 91.3 3.7e-211 730.7
Chy11g00060 . 1 356 Cytoskeleton Gene Families AT3G12110 95.8 1.9e-199 691.8
Chy02g01031 . 19 396 Cytoskeleton Gene Families AT3G18780 93.1 3.5e-209 724.2
Chy09g00409 CCT 1 378 Cytoskeleton Gene Families AT3G18780 92.6 3.5e-209 724.2
Chy04g01779 . 1 378 Cytoskeleton Gene Families AT3G18780 92.3 1.3e-208 722.2
Chy08g00757 . 1 378 Cytoskeleton Gene Families AT3G18780 92.3 2.9e-208 721.1
Chy01g00298 . 1 378 Cytoskeleton Gene Families AT3G18780 92.3 3.8e-208 720.7
Chy10g00547 . 1 402 Cytoskeleton Gene Families AT3G18780 86.8 2.0e-204 708.4
Chy11g00060 . 1 356 Cytoskeleton Gene Families AT3G18780 93.5 4.4e-196 680.6
Chy02g01031 . 19 396 Cytoskeleton Gene Families AT1G49240 93.4 1.2e-209 725.7
Chy09g00409 CCT 1 378 Cytoskeleton Gene Families AT1G49240 92.9 1.2e-209 725.7
Chy04g01779 . 1 378 Cytoskeleton Gene Families AT1G49240 92.6 4.5e-209 723.8
Chy08g00757 . 1 378 Cytoskeleton Gene Families AT1G49240 92.6 1.0e-208 722.6
Chy01g00298 . 1 378 Cytoskeleton Gene Families AT1G49240 92.6 1.3e-208 722.2
Chy10g00547 . 1 402 Cytoskeleton Gene Families AT1G49240 87.1 6.7e-205 709.9
Chy11g00060 . 1 356 Cytoskeleton Gene Families AT1G49240 93.8 1.5e-196 682.2
Chy02g01031 . 19 396 Cytoskeleton Gene Families AT5G09810 98.4 5.9e-217 750.0
Chy04g01779 . 1 378 Cytoskeleton Gene Families AT5G09810 96.6 4.7e-214 740.3
Chy08g00757 . 1 378 Cytoskeleton Gene Families AT5G09810 96.6 4.7e-214 740.3
Chy01g00298 . 1 378 Cytoskeleton Gene Families AT5G09810 95.8 1.4e-213 738.8
Chy09g00409 CCT 1 378 Cytoskeleton Gene Families AT5G09810 95.5 4.4e-212 733.8
Chy10g00547 . 1 402 Cytoskeleton Gene Families AT5G09810 90.3 2.6e-209 724.5
Chy11g00060 . 1 356 Cytoskeleton Gene Families AT5G09810 98.6 2.8e-203 704.5
Chy05g01409 . 1 132 Cytoskeleton Gene Families AT2G19760 76.5 1.3e-57 219.2
Chy05g01410 . 1 134 Cytoskeleton Gene Families AT2G19760 76.1 1.2e-55 212.6
Chy04g00956 . 1 132 Cytoskeleton Gene Families AT2G19760 73.5 2.9e-54 208.0
Chy05g01409 . 1 132 Cytoskeleton Gene Families AT4G29350 78.0 7.4e-58 219.9
Chy04g00956 . 1 132 Cytoskeleton Gene Families AT4G29350 75.0 4.5e-55 210.7
Chy05g01410 . 1 134 Cytoskeleton Gene Families AT4G29350 74.6 2.2e-54 208.4
Chy05g01410 . 1 134 Cytoskeleton Gene Families AT4G29340 85.2 1.4e-64 242.3
Chy05g01409 . 1 132 Cytoskeleton Gene Families AT4G29340 70.4 8.6e-54 206.5
Chy04g00956 . 1 132 Cytoskeleton Gene Families AT4G29340 68.9 8.1e-52 199.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000501 4 6 1 4 4 2 6 4 2 3 2 1 3 3 3 6 2 7 7 3 3 3 2 4 5 5 3 6 4 4 112
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g00956 Chy_Chr04 FPKM 1.908629 3.699674 2.378125 2.221085 5.579037 3.94406 3.976097 4.287921 3.775582 3.911393