Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00971 ATGAGTTCTCAAGCACCCAAATCGTCGAGACCTTCGAAACCCCCAAATCAATCGCCACCCACATCCAGATCCTCGGCCTCTTCTCTATCTTCCCATCTCGCCATGGTTGAACTCAAGCAAAGGATTCTTACCGCTCTCTCTAAGCTTGCCGATCGAGACACCCACCAGATCGCCATTGACGACCTGGAGAAAATTATCCAGTCCATTTCCCCGGAAGCCATTCCTATGCTCCTCAATTGCCTCTACGACTCCTCTGCTGACCCGAAACCCGCTGTGAAGAAAGAGTCATTGCGGCTTCTAACTGTTGTTTGTGCTTCCCATAGTGATTCTACTTCCACCCATTTAACTAAAATTATAGCTCACATCATAAGAAGGGTTAAAGATTCTGATTCTGGGGTGAAGGATTCGTGTAGAGATGCCATTGGTGCACTGTCGGCGCAGTACTTGAAAGGGGATAGTTCTGGCGGTGGTGATAATGGAGGTCTTGGGTCTGTGGTAGCATTATTTGTTAAGCCACTGTTTGAGGCAATGGGAGAACAGAACAAGGGCGTTCAATCTGGGGCTGCATTGTGTATGGCTAAGATGGTGGAGTGTGCGGCCAGCCCACCCATCATGGCCTTTCAGAAGCTTTGCCCCAGGATCTGTAAGTTGCTCAACAATCCAAACTTTTTGGCAAAGGCTTCACTCCTCCCTGTGGTATCCAATTTATCACAGGTTGGTGCTATTGGACAACAGAGTTTGGAAAATTTGCTACCAAGTGTTCATGAGTTACTTGGGAGCTCTGACTGGACGACACGCAAGGCAGCAGCTGATGCACTAAGTGCATTAGCATTGCATTCAAGCAATTTCATTACAGATGGAGGTGCTTCCACTTTGGCAGTACTCGAGGCTTGTCGTTTTGACAAGATAAAACCTGTTCGAGACAGCATGACAGAGGCACTACAGCTATGGAAAAAACTTGCTGGTAAAACAGATGGTGCTGCAGAAAGTCAAAATACATCTCAAGACGGTGAAAGCCATGAACCAGCGGAGTTGTCTCAAAAGTCTGACACGACAACTGCAAATTCCCCCCAGGGAGGGAGGTCACTAGACAAAGATAAATCTGAGGAACCTATCCCTGTATTGAATTCAGCTTTGAAAACCAAATGTGGTAGTATTTCAGATAAAGCGGCTGTAATATTGAAGAAGAAAGTACCTGCTTTAACTGACAAAGAGTTGAACCCGGAATTCTTTCAGAAACTCGAAACTAGGGGATCTGGGGATTTGCCTGTGGAGGTGGTTCTTCCTCGCAGACATGCCAATTCTTCAAACACAAACGATGAGAAATCAGAGCCAGATAAGTCAACTGCAGGGGGAAGATCAACTCGTGTTGAAAACACCAACACAGATGATTTTCAAAGAGCATTCAATAAGTTTCGTGACTCCGAAAGAGCTCAAATGGCTAAGATGCGGGATTATGATGATCTTGAGCGAGATAAATGGCATGAGGGGAAAATAAATGGAAGAGACTCCCGAACGAGAGCATACAATGTGAATGATCAAAATGACGCATCTCAGCGGGAATCTTCTGGTGCTCGTTCGGACTTCTCCAAAATGGATGCCCAATCGGAAAGTTCCTTCATAAATAGCAAAGGAAGTTGGTCCGCTATCCAGAGGCAGCTATTGCAGTTGGAGAGGCAACAGGCGCATTTGATGAACATGCTGCAGGATTTCATGGGAGGCTCTCATGATAGCATGATAACTTTGGAAAACAGAGTCCGTGGACTTGAGAGAGTTGTCGAAGATATGGCACGTGATTTATCCGTGTCATCTGGTAGGAGAGGGAACTTTCCTCTAGGATTTGAAGGATCGTCTAATAGACATCTAGGCAAGTATAGTGGATTTTCAGACTATCCGGTTGCCAAGTTTGGACGAAACAATGATGGAAGAGTTCCTTTTGGAGAGAGGTTTATTCAATCAGAAGGAATTGGTGCAAACATGAGAGGAAGGAGTGCTGCATGGAGGCCTGATATGAATGAAACTTGGGATTATCCTGCTTACATGTCGAGAAATGGGCAGATGGGATCTAAGAGATCTCTAGATGCCAGCAACGACAATAGGTCATCTAAATCAGAACAGGAAAGTGACCAAGGTGGTAACAGAAGAGCATGGGATAAAGGTGCTGGACCTTTAAGACTTGGTGAGGGGCCATCTGCAAGAAGTGTTTGGCAAGCATCGAAAGACGAAGCAACCTTAGAAGCCATTCGGGTAGCTGGGGAAGACAATGGAATATCTAGGACTCCGAAAGTGGCCATTCCTGAATTGACTGCCGAAGCATTGGTAGAGGACAATGCTGGTCAAGAACGGGATCCAGTATGGACTTCTTGGACTAATGCAATGGATGCCCTTCAGGCAGGGGATATGGACATGGCTTATGCTGAAGTTCTTTCTACTGGAGACGACATCTTGCTCATAAAGCTAATGGAAAGAACTGGGCCTGCGGTCGACCAAATCTCAAATGAGATAGTCATTGAGATTTTCCGTGCCGTGGGACAATTTCTACTCGAGCAGAACTTGTTTGACATATGTTTATTTTGGATTCAACAGTTGGTAGAAATTGTTTTGGACAATGGACCTGACTGTGTGGGGATTCCTATGGAAGTGAAGAAAGAACTATTGTTAAATTTTCATGAAGCATCTTCAACAATGGATCCACCTGAAGATTGGGAAGGTGCTTTACCTGACCAACTTTTGTCGCAGTTGGCCTCTGCTTGGAGAATTGATATTGGACAACTCCAATAG 2781 45.42 MSSQAPKSSRPSKPPNQSPPTSRSSASSLSSHLAMVELKQRILTALSKLADRDTHQIAIDDLEKIIQSISPEAIPMLLNCLYDSSADPKPAVKKESLRLLTVVCASHSDSTSTHLTKIIAHIIRRVKDSDSGVKDSCRDAIGALSAQYLKGDSSGGGDNGGLGSVVALFVKPLFEAMGEQNKGVQSGAALCMAKMVECAASPPIMAFQKLCPRICKLLNNPNFLAKASLLPVVSNLSQVGAIGQQSLENLLPSVHELLGSSDWTTRKAAADALSALALHSSNFITDGGASTLAVLEACRFDKIKPVRDSMTEALQLWKKLAGKTDGAAESQNTSQDGESHEPAELSQKSDTTTANSPQGGRSLDKDKSEEPIPVLNSALKTKCGSISDKAAVILKKKVPALTDKELNPEFFQKLETRGSGDLPVEVVLPRRHANSSNTNDEKSEPDKSTAGGRSTRVENTNTDDFQRAFNKFRDSERAQMAKMRDYDDLERDKWHEGKINGRDSRTRAYNVNDQNDASQRESSGARSDFSKMDAQSESSFINSKGSWSAIQRQLLQLERQQAHLMNMLQDFMGGSHDSMITLENRVRGLERVVEDMARDLSVSSGRRGNFPLGFEGSSNRHLGKYSGFSDYPVAKFGRNNDGRVPFGERFIQSEGIGANMRGRSAAWRPDMNETWDYPAYMSRNGQMGSKRSLDASNDNRSSKSEQESDQGGNRRAWDKGAGPLRLGEGPSARSVWQASKDEATLEAIRVAGEDNGISRTPKVAIPELTAEALVEDNAGQERDPVWTSWTNAMDALQAGDMDMAYAEVLSTGDDILLIKLMERTGPAVDQISNEIVIEIFRAVGQFLLEQNLFDICLFWIQQLVEIVLDNGPDCVGIPMEVKKELLLNFHEASSTMDPPEDWEGALPDQLLSQLASAWRIDIGQLQ* 927
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14232337 14252114 - Chy4G076890.1 Chy04g00971 224870

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00971 926 MobiDBLite consensus disorder prediction 1 30 - -
Chy04g00971 926 MobiDBLite consensus disorder prediction 505 535 - -
Chy04g00971 926 PANTHER MICROTUBULE-ASSOCIATED PROTEIN TORTIFOLIA1 22 924 - -
Chy04g00971 926 Gene3D - 37 153 IPR011989 -
Chy04g00971 926 MobiDBLite consensus disorder prediction 497 535 - -
Chy04g00971 926 Gene3D - 154 304 IPR011989 -
Chy04g00971 926 SMART TOG_3 67 309 IPR034085 -
Chy04g00971 926 SUPERFAMILY ARM repeat 37 317 IPR016024 -
Chy04g00971 926 MobiDBLite consensus disorder prediction 326 361 - -
Chy04g00971 926 MobiDBLite consensus disorder prediction 324 370 - -
Chy04g00971 926 MobiDBLite consensus disorder prediction 696 714 - -
Chy04g00971 926 MobiDBLite consensus disorder prediction 422 476 - -
Chy04g00971 926 PANTHER MICROTUBULE-ASSOCIATED PROTEIN TORTIFOLIA1 22 924 IPR033337 GO:0005874|GO:0008017
Chy04g00971 926 MobiDBLite consensus disorder prediction 435 451 - -
Chy04g00971 926 MobiDBLite consensus disorder prediction 678 738 - -
Chy04g00971 926 Coils Coil 579 599 - -
Chy04g00971 926 MobiDBLite consensus disorder prediction 452 466 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00971 - - - csv:101218802 1767.67
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g01609 Chy-Chr2:14947440 Chy04g00971 Chy-Chr4:14232337 3.22E-15 dispersed
Chy03g00995 Chy-Chr3:13463011 Chy04g00971 Chy-Chr4:14232337 1.14E-58 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g480 Blo03g00570 Blo03g01445 Bda07g00351 Bda09g00392 . Bpe08g01131 . . . . Cma01g01137 Cma09g00942 . Car09g00856 . Cpe06g00759 Cpe02g00763 . . . . . . . . . . . . . . . . . . Lsi04g01217 . Chy04g00971 . . . . . Bpe11g00536 . Bma07g01305 Bma14g00345 . Cmo01g01188 Cmo09g00940 . . . Car16g00548 . . . . . . . . . Cla05g01500 Cam05g1618 Cec05g1622 Cco05g1647 Clacu05g1603 Cmu05g1502 . . . . Cme04g00856
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004874 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 2 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g00971 Chy_Chr04 FPKM 12.08367 10.602952 3.946806 4.121251 21.564276 22.084347 22.037907 6.110716 5.593727 5.63313