Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00988 ATGGAAGCCCTAAATGTGCCCTTGCTTTCTCAAGGTCTCATCAATTCTTCCCCTTCCAAGTCCTCACCGGCTTGCCAGAAAGCTTTTCAGCTACGGTGGAACAAGTTTGAAAGGAATGCTAGTCTTTTGAAGCGCCAATTGACTTGGCAATTTAATGACCATTTAAGAAAAAAAGGGATCAGCGGACATATAAAAGTTAATTATGAGGAAAAGACCCTCTCAGTTGAGGTGAAGATGCCCCAGGATGCATCCAGCAGTTCTGTTCGTGATACCTGTGGACTTTCAGGCGGAGAACGATCATTTTCAACTCTATGCTTTGCTTTGGCATTATACGAGATGCCAGAAGCCTCATTTCGAGCAATGGATGAGTTTGATGTGTTTATGGATGAAATAAGTCGGAGAATTAACTTAGACACTCTTGTGGATTTTGCATTGGCACAAGGCTCCCAATGGATATTTATCACGCCTCATGACACTGGCATTTCAAGAGTGAGAACACAAAGAACAGATTCATTTGATAAAAATTTTGTGATTGGAGTTGGCGGTATATGTAAATCGGCTTCTGGGATTTTTGTGTTAATTGGCTTTTGTAATTTTCGCAGAGTTGTTTCAGATCAAAATAATATGCAACCTAATCGCCTGAAAATACCAAGAGATTTAACGGAGGCAACATTATCTGGTGCAGGATTATCAATAGTAGCAGCTCTGTCCATGGTCTTTTTATTTGGAATGGAATTGAGTAATTATTTGAGTGTTAGCACGTCTACATCTGTAATTGTTGACAATAGTACTGATGGTGACTTCTTACGGATGGACTTTAATATCAGTTTCCCTGCACTCTCATGCGAATTTGCTGCTGTAGATGTGCACGATGTCTTAGGAACAAATAGGTTGAATATTACGAAAACGATCCGCAAATTTTCTATAGATTCAAATTTGCGGTCCACTGGATCTGAGTTTCACTCAGGACCACTATCAAATTTGATTAAGCATGGGGATGAAGTAGATGAAGAAGCCAATGAAGGTTCTGCTGTGTTGAATGCTCGGAACTTTGATAGATATGCTAATCAGCATCCTATTTTGGTGGTTAATTTTTATGCTCCATGGTGCTACTGGAGTAATAGGCTGAAACCTTCATGGGAGAAGGCTGCCAAAACTATAAGAGAAAGATATGATCCAGAATTAGATGGACGAATTCTTATGGCAAAAGTTGATTGCACTGAAGAAGGTGATTTGTGTCGGAAGCATCACATACAAGGTTATCCATCTATCCGCATTTTTCGGAAAGGAAGTGATGTAAGGGATGATCATGGACACCATGACCATGAATCTTACTATGGAGATCGAGATACAGACTCACTGGTTAAGACAATGGAAGATTTGATTGCACCTCTTCCTTTGGAGGACAAATCCAACAATGGAACAGGAAATGTTAAGAGGCCTGCTCCATCAGCAGGAGGCTGCCGGATTGAAGGATATGTTCGCGTAAAGAAGGTTCCAGGAAGCCTTGTAATTGCAGCTCGTTCAGAATCTCATTCATTTGATGCATCTCAAATGAATATGTCACACATCATATCTCACCTTTCATTCGGTAGGAAGATTTCCCCCAAGGCATTTAGTGATGCTAAACAATTAATTCCGTACATTGGTATAAGCCATGACAGGTTGAATGGGCGGTCATTTATTAATCAGCGGGACTTGGGTGCAAATGTTACCATAGAGCATTATCTTCAAATAGTTAAAACAGAGGTGCTGACGAGGAGATCAGGTAAGTTACTTGAAGAGTATGAATACACAGCACACAGCAGCGTATCCCAGAGTCTATATATACCGGTTGCGAAATTCCATTTTGAGCTCTCTCCCATGCAGGTTGTGATTACGGAAAACCAGAAGTCCTTTTCACATTTTATGACAAATGTGTGTGCCATAATTGGAGGTGTTTTTACTGTGGCTGGAATATTGGATGCACTCCTGCACAATACTATTAGACTCGTGAAGAAAGTTGAATTAGGCAAAAATTTTTGA 2025 40.4 MEALNVPLLSQGLINSSPSKSSPACQKAFQLRWNKFERNASLLKRQLTWQFNDHLRKKGISGHIKVNYEEKTLSVEVKMPQDASSSSVRDTCGLSGGERSFSTLCFALALYEMPEASFRAMDEFDVFMDEISRRINLDTLVDFALAQGSQWIFITPHDTGISRVRTQRTDSFDKNFVIGVGGICKSASGIFVLIGFCNFRRVVSDQNNMQPNRLKIPRDLTEATLSGAGLSIVAALSMVFLFGMELSNYLSVSTSTSVIVDNSTDGDFLRMDFNISFPALSCEFAAVDVHDVLGTNRLNITKTIRKFSIDSNLRSTGSEFHSGPLSNLIKHGDEVDEEANEGSAVLNARNFDRYANQHPILVVNFYAPWCYWSNRLKPSWEKAAKTIRERYDPELDGRILMAKVDCTEEGDLCRKHHIQGYPSIRIFRKGSDVRDDHGHHDHESYYGDRDTDSLVKTMEDLIAPLPLEDKSNNGTGNVKRPAPSAGGCRIEGYVRVKKVPGSLVIAARSESHSFDASQMNMSHIISHLSFGRKISPKAFSDAKQLIPYIGISHDRLNGRSFINQRDLGANVTIEHYLQIVKTEVLTRRSGKLLEEYEYTAHSSVSQSLYIPVAKFHFELSPMQVVITENQKSFSHFMTNVCAIIGGVFTVAGILDALLHNTIRLVKKVELGKNF* 675
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14524124 14556350 - Chy4G077060.1 Chy04g00988 224887

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00988 674 SUPERFAMILY Thioredoxin-like 340 462 IPR036249 -
Chy04g00988 674 PANTHER PROTEIN DISULFIDE-ISOMERASE 5-3 215 674 - -
Chy04g00988 674 Gene3D - 3 173 IPR027417 -
Chy04g00988 674 ProSiteProfiles Thioredoxin domain profile. 314 463 IPR013766 -
Chy04g00988 674 Pfam Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC) 215 297 IPR039542 -
Chy04g00988 674 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 44 159 IPR027417 -
Chy04g00988 674 Gene3D Glutaredoxin 335 478 - -
Chy04g00988 674 Pfam Thioredoxin 344 443 IPR013766 -
Chy04g00988 674 Pfam Endoplasmic reticulum vesicle transporter 484 655 IPR012936 -
Chy04g00988 674 CDD PDI_a_family 345 458 - -
Chy04g00988 674 PANTHER ENDOPLASMIC RETICULUM-GOLGI INTERMEDIATE COMPARTMENT PROTEIN 215 674 IPR045888 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00988 - - - csv:101213231 902.508
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00988 Chy-Chr4:14524124 Chy07g01392 Chy-Chr7:18541073 1.93E-86 dispersed
Chy12g00887 Chy-Chr12:14220509 Chy04g00988 Chy-Chr4:14524124 9.27E-13 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy01g01830 . 4 1033 Structural Maintenance of Chromosomes family AT5G15920 68.3 0.0e+00 1364.4
Chy07g01391 . 10 896 Structural Maintenance of Chromosomes family AT5G07660 61.0 3.4e-294 1008.1
Chy07g01392 . 1 156 Structural Maintenance of Chromosomes family AT5G07660 79.5 1.7e-67 255.0
Chy04g00988 . 24 166 Structural Maintenance of Chromosomes family AT5G07660 72.0 1.6e-54 211.8
Chy07g01391 . 7 896 Structural Maintenance of Chromosomes family AT5G61460 63.7 7.1e-313 1070.1
Chy07g01392 . 1 156 Structural Maintenance of Chromosomes family AT5G61460 84.6 8.5e-72 269.2
Chy04g00988 . 24 166 Structural Maintenance of Chromosomes family AT5G61460 76.2 1.2e-57 222.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005210 2 1 3 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 2 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g00988 Chy_Chr04 FPKM 0.882051 0.0 1.125664 0.0 0.0 0.0 0.659507 1.307235 1.252189 2.104388