Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00988 ATGGAAGCCCTAAATGTGCCCTTGCTTTCTCAAGGTCTCATCAATTCTTCCCCTTCCAAGTCCTCACCGGCTTGCCAGAAAGCTTTTCAGCTACGGTGGAACAAGTTTGAAAGGAATGCTAGTCTTTTGAAGCGCCAATTGACTTGGCAATTTAATGACCATTTAAGAAAAAAAGGGATCAGCGGACATATAAAAGTTAATTATGAGGAAAAGACCCTCTCAGTTGAGGTGAAGATGCCCCAGGATGCATCCAGCAGTTCTGTTCGTGATACCTGTGGACTTTCAGGCGGAGAACGATCATTTTCAACTCTATGCTTTGCTTTGGCATTATACGAGATGCCAGAAGCCTCATTTCGAGCAATGGATGAGTTTGATGTGTTTATGGATGAAATAAGTCGGAGAATTAACTTAGACACTCTTGTGGATTTTGCATTGGCACAAGGCTCCCAATGGATATTTATCACGCCTCATGACACTGGCATTTCAAGAGTGAGAACACAAAGAACAGATTCATTTGATAAAAATTTTGTGATTGGAGTTGGCGGTATATGTAAATCGGCTTCTGGGATTTTTGTGTTAATTGGCTTTTGTAATTTTCGCAGAGTTGTTTCAGATCAAAATAATATGCAACCTAATCGCCTGAAAATACCAAGAGATTTAACGGAGGCAACATTATCTGGTGCAGGATTATCAATAGTAGCAGCTCTGTCCATGGTCTTTTTATTTGGAATGGAATTGAGTAATTATTTGAGTGTTAGCACGTCTACATCTGTAATTGTTGACAATAGTACTGATGGTGACTTCTTACGGATGGACTTTAATATCAGTTTCCCTGCACTCTCATGCGAATTTGCTGCTGTAGATGTGCACGATGTCTTAGGAACAAATAGGTTGAATATTACGAAAACGATCCGCAAATTTTCTATAGATTCAAATTTGCGGTCCACTGGATCTGAGTTTCACTCAGGACCACTATCAAATTTGATTAAGCATGGGGATGAAGTAGATGAAGAAGCCAATGAAGGTTCTGCTGTGTTGAATGCTCGGAACTTTGATAGATATGCTAATCAGCATCCTATTTTGGTGGTTAATTTTTATGCTCCATGGTGCTACTGGAGTAATAGGCTGAAACCTTCATGGGAGAAGGCTGCCAAAACTATAAGAGAAAGATATGATCCAGAATTAGATGGACGAATTCTTATGGCAAAAGTTGATTGCACTGAAGAAGGTGATTTGTGTCGGAAGCATCACATACAAGGTTATCCATCTATCCGCATTTTTCGGAAAGGAAGTGATGTAAGGGATGATCATGGACACCATGACCATGAATCTTACTATGGAGATCGAGATACAGACTCACTGGTTAAGACAATGGAAGATTTGATTGCACCTCTTCCTTTGGAGGACAAATCCAACAATGGAACAGGAAATGTTAAGAGGCCTGCTCCATCAGCAGGAGGCTGCCGGATTGAAGGATATGTTCGCGTAAAGAAGGTTCCAGGAAGCCTTGTAATTGCAGCTCGTTCAGAATCTCATTCATTTGATGCATCTCAAATGAATATGTCACACATCATATCTCACCTTTCATTCGGTAGGAAGATTTCCCCCAAGGCATTTAGTGATGCTAAACAATTAATTCCGTACATTGGTATAAGCCATGACAGGTTGAATGGGCGGTCATTTATTAATCAGCGGGACTTGGGTGCAAATGTTACCATAGAGCATTATCTTCAAATAGTTAAAACAGAGGTGCTGACGAGGAGATCAGGTAAGTTACTTGAAGAGTATGAATACACAGCACACAGCAGCGTATCCCAGAGTCTATATATACCGGTTGCGAAATTCCATTTTGAGCTCTCTCCCATGCAGGTTGTGATTACGGAAAACCAGAAGTCCTTTTCACATTTTATGACAAATGTGTGTGCCATAATTGGAGGTGTTTTTACTGTGGCTGGAATATTGGATGCACTCCTGCACAATACTATTAGACTCGTGAAGAAAGTTGAATTAGGCAAAAATTTTTGA 2025 40.4 MEALNVPLLSQGLINSSPSKSSPACQKAFQLRWNKFERNASLLKRQLTWQFNDHLRKKGISGHIKVNYEEKTLSVEVKMPQDASSSSVRDTCGLSGGERSFSTLCFALALYEMPEASFRAMDEFDVFMDEISRRINLDTLVDFALAQGSQWIFITPHDTGISRVRTQRTDSFDKNFVIGVGGICKSASGIFVLIGFCNFRRVVSDQNNMQPNRLKIPRDLTEATLSGAGLSIVAALSMVFLFGMELSNYLSVSTSTSVIVDNSTDGDFLRMDFNISFPALSCEFAAVDVHDVLGTNRLNITKTIRKFSIDSNLRSTGSEFHSGPLSNLIKHGDEVDEEANEGSAVLNARNFDRYANQHPILVVNFYAPWCYWSNRLKPSWEKAAKTIRERYDPELDGRILMAKVDCTEEGDLCRKHHIQGYPSIRIFRKGSDVRDDHGHHDHESYYGDRDTDSLVKTMEDLIAPLPLEDKSNNGTGNVKRPAPSAGGCRIEGYVRVKKVPGSLVIAARSESHSFDASQMNMSHIISHLSFGRKISPKAFSDAKQLIPYIGISHDRLNGRSFINQRDLGANVTIEHYLQIVKTEVLTRRSGKLLEEYEYTAHSSVSQSLYIPVAKFHFELSPMQVVITENQKSFSHFMTNVCAIIGGVFTVAGILDALLHNTIRLVKKVELGKNF* 675
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14524124 14556350 - Chy4G077060.1 Chy04g00988 224887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00988 674 SUPERFAMILY Thioredoxin-like 340 462 IPR036249 -
Chy04g00988 674 PANTHER PROTEIN DISULFIDE-ISOMERASE 5-3 215 674 - -
Chy04g00988 674 Gene3D - 3 173 IPR027417 -
Chy04g00988 674 ProSiteProfiles Thioredoxin domain profile. 314 463 IPR013766 -
Chy04g00988 674 Pfam Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC) 215 297 IPR039542 -
Chy04g00988 674 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 44 159 IPR027417 -
Chy04g00988 674 Gene3D Glutaredoxin 335 478 - -
Chy04g00988 674 Pfam Thioredoxin 344 443 IPR013766 -
Chy04g00988 674 Pfam Endoplasmic reticulum vesicle transporter 484 655 IPR012936 -
Chy04g00988 674 CDD PDI_a_family 345 458 - -
Chy04g00988 674 PANTHER ENDOPLASMIC RETICULUM-GOLGI INTERMEDIATE COMPARTMENT PROTEIN 215 674 IPR045888 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00988 Chy-Chr4:14524124 Chy07g01392 Chy-Chr7:18541073 1.93E-86 dispersed
Chy12g00887 Chy-Chr12:14220509 Chy04g00988 Chy-Chr4:14524124 9.27E-13 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00988 - - csv:101213231 902.508