Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00994 ATGGCAGGCAAAAGCATGTTCCATTACGCTGATAGCATCGACAAGTTTTTGATGTTCTTTGGGACTCTGGGGAGCATTGGAGATGGATTGCAGGTCCCTCTCATGATGTACATTCTCAAGGATGTGATCAATGCTTATGGAGATAAAAACAGTGGCTTGACAAATGATATGGTTGACACGTACGTAAAGCAACTGGTTAACTTGCAAACTAACATCTTTCAGTTCGCACTACGTCTACTTTACACTGCAATTGGAGTCGGACTCTCGGCCTTCGTGGAGGGATTGTGTTGGGCAAGAACAGCAGAGAGACAGACGTCTAGGATGAGAATGGAATATTTGAAATCCGTGCTTAGACAAGAAGTTAGCTTCTTTGATACCCAAACTGGTTCCACAACTCATGAGGTTGTCTCCCTTATTTCCTCTGATGCTAGTTCAATCCAAGTTGCATTATGTGAAAAGATACCTGATTGCCTTGCTTACATGTCAACATTTTTCTTCTGCCATGTATTTGCCTTTATAGTATCATGGAGATTCACCTTTGCAGTGATCCCACTCTCAGCCATGTTCATTGGTCCAGGGCTCGTGTTTGGCAAAATTATGATGGACCTGATAATGAAGATGATTGAATCTTATGGTGTTGCTGGTGGGATTGTAGAGCAAGCGGTATCTTCAATAAGAACTGTATATGCATATGTAGGAGAAAATCAAACACAGGAAAAATTCAGCCAAGCACTCCAAAAAAGTATGGAATTTGGTATAAAATCCGGTTTGGTGAAGGGATTGATGCTTGGAAGTATGGGAATCATTTATGCTGGTTGGGGTTTTCAAGCTTGGGTTGGCACTTATTTGATTACAGAGAAAGGAGAAAAAGGAGGCAATATTTTTATTGCTGGTTTCAATGTTCTAATGGGAGGACTGAGTATATTGAGTGCACTTCCTCATCTAACCTCCATCACAGAGGCAACATCTGCAACAACTCGTATCCTTGAAATGATTGATCGTGTCGCAGAGACAGACAGAGAAGAGAAAAAGGAGAAAGCCCTGTCACATGTGAAAGGAGAGATTGAATTTCAAAATGTATATTTTACCTATCCATCAAGGCCAGATACACCTGTTTTACAAGGTTTCAATCTGAAGGTTCCAGCAGGGAAGAGAGTAGGGCTGGTGGGAGGAAGTGGATCTGGCAAGTCTACAGTTATCTCACTGCTTGAAAGGTTTTATGATCCCACTGATGGAGAAATACTCTTGGATGGACATAAAATAAAAAGATTTCAGCTAAAATGGTTGAGATCTCAAATGGGTTTGGTGAATCAGGAACCTGTTCTATTTGCAACTTCAATAAAAGAGAACATAATGTTTGGAAAAGATGGAGCTTCAATGGAGCAAGTGATAAATGCAGCTAAAGCTGCAAATGCACATGACTTCATCGTTAAGCTGCCAGAAGGTTACGATACTCAAGTTGGTCAGTTTGGATTCCAAATGTCTGGAGGTCAAAAGCAACGGATTGCCATTGCAAGAGCTCTTCTTCGGGACCCAAAAATACTGCTACTCGATGAAGCAACCAGTGCACTGGATGCACAATCGGAACGAATGGTACAGGAAGCAATTGATAAGGCATCAAAAGGAAGGACGACAATCACCATTGCACATCGCCTATCAACAATACAAACGGCACATCAAATTGTGGTTCTTAAAGCTGGGGAAGTAATTGAATCAGGTTCACACGATGAGCTGATGTTGTTGAACAATGGACAGGGTGGGGAGTATCTACGGATGGTGCAGTTGCAACAGATGGCAGTGCAGAATGAAACATTCTATGATACCAATATTGAAATGGATCGAAGATATCGCCATAGGATGAGTGCTCCCACAAGCCCAATCAGTGTGAAATCTGGAGGACATAATACTCCAGTATTATTTCCCTTCAGCACAGCAATGTCCGTCTCCATGGGAACACCGTACTCTTACTCTGTCCAATTTGATCCTGACGATGAAAGCTTTGAAGAAGATAGAAAGCATCCAGCTTATCCTTCTCCTTCCCAGTGGCGTTTGCTGAAAATGAATGCACCTGAATGGAGACGAGCACTGCTTGGATGTATAGGTGCTCTAGGCTCAGGAGCAGTTCAACCCATCAATGCTTATTGTGTAGGAGCACTCATATCAGTTTATTTTCGTGCTAATGAGCCCAACATTAAGTCTAAATCTAGAAACTTGTCACTTGTCTTCTTAGGCATTGGCATTTTCAACTTCTTAACGAATATCCTGCAGCATTATAATTTTTCAATCATGGGAGAAAGACTTACCAAGCGGGTGCGTGAGAAGATACTTGAAAAGCTTATGACATTTGAAATTGGATGGTTTGATCAAGATGAGAACACAAGTGCAGCCATTTGTGCAAGGTTATCAACTGAAGCCAACATGGTTCGTTCCCTTGTTGGAGACAGAATGTCACTACTGGTTCAAGCAATTTTTAGTGCAGCCTTTGCTTACAGTGTGGGGCTTGTGCTCTCATGGAGGTTAACTCTGGTGATGATTGCAGTGCAGCCACTAGTTATTGGTAGTTTCTATGCGAGAAGTGTGTTGATGAAGAGCATGGCTGAGAAAGCCCGAAAAGCACAGAGAGAAGGAAGCCAACTTGCAAGTGAAGCTGTAACAAACCATAAAACTATTGTTGCATTCTCATCCCAGAAAAAGATACTCGGGCTCTTTGCTGCCACCCTGAAATCTCCTAAGAAAGAGAGTGCTAGACAATCTTGGATATCTGCCCTTGGCCTGTTCAGTTCCCAGTTCTTTAACACTGCTTCAACAGCTTTGGCCTACTGGTATGGTGGGAGGCTATTGACACAAGATATGATATCCTCAGAACACATCTTTCAAGCATTCTTGATATTGCTATTCACTGCATACATCATAGCAGACGCCGGAAGTATGACTTCTGATATATCTAGAGGAAGCAATGCTGTTGGATCAGTTATTGCAATCCTAGACAGGAAGACTGAAATTGATCCAGAGAACAAATCAGGGAGAGATCACAAAAGACGGATAAAGGGAAAAGTGGAGCTCAGGAGTATTTGCTTCTCATATCCAACAAGACCAGAACAGATGATTTTAAGGGGGCTGAGCCTTAAAATTGATGCAGGAAAAACAGTTGCTCTGGTGGGGCAGAGTGGTTCTGGAAAATCTACTATTATTGGACTTATTGAAAGGTTCTATGATCCCTCAACCGGATCTATACATATTGATGAACTCGACATTAAGAACTACAATTTGAGATGGTTAAGGTCACAAATTGCATTAGTCAGTCAAGAGCCAACTCTTTTTGCTGGAACTATTAGAGAAAACATTGCTTATGGAAAAGAGGAGGCAGGGGAATCAGAGATCAGAGAAGCAGCTGTTCTGGCCAATGCCCATGAATTTATAAGTGGAATGAAAGATGAGTATGATACATACTGTGGAGAGAGAGGAGCACAGCTATCAGGAGGGCAAAAGCAAAGAATCGCACTGGCTCGAGCAATCCTGAAGAACCCATCAATCCTGCTGCTAGATGAAGCAACAAGCGCACTGGACAGTGTATCAGAGAATTTGGTGCAGGAAGCCCTGGAGAAGATGATGGTTGGCAGAACTTGCATAATCGTAGCTCACCGATTATCGACGATTCAGAAGGCGAACACCATTGCGGTGATCAAGAACGGGAAAGTCGTGGAACAAGGATCGCACAGTGAGCTGATTTCAATGGGGCAACGTGGAGAGTACTATTCTTTGACAAAATCGCAGGCCGCATTGAATCTTTGA 3792 42.51 MAGKSMFHYADSIDKFLMFFGTLGSIGDGLQVPLMMYILKDVINAYGDKNSGLTNDMVDTYVKQLVNLQTNIFQFALRLLYTAIGVGLSAFVEGLCWARTAERQTSRMRMEYLKSVLRQEVSFFDTQTGSTTHEVVSLISSDASSIQVALCEKIPDCLAYMSTFFFCHVFAFIVSWRFTFAVIPLSAMFIGPGLVFGKIMMDLIMKMIESYGVAGGIVEQAVSSIRTVYAYVGENQTQEKFSQALQKSMEFGIKSGLVKGLMLGSMGIIYAGWGFQAWVGTYLITEKGEKGGNIFIAGFNVLMGGLSILSALPHLTSITEATSATTRILEMIDRVAETDREEKKEKALSHVKGEIEFQNVYFTYPSRPDTPVLQGFNLKVPAGKRVGLVGGSGSGKSTVISLLERFYDPTDGEILLDGHKIKRFQLKWLRSQMGLVNQEPVLFATSIKENIMFGKDGASMEQVINAAKAANAHDFIVKLPEGYDTQVGQFGFQMSGGQKQRIAIARALLRDPKILLLDEATSALDAQSERMVQEAIDKASKGRTTITIAHRLSTIQTAHQIVVLKAGEVIESGSHDELMLLNNGQGGEYLRMVQLQQMAVQNETFYDTNIEMDRRYRHRMSAPTSPISVKSGGHNTPVLFPFSTAMSVSMGTPYSYSVQFDPDDESFEEDRKHPAYPSPSQWRLLKMNAPEWRRALLGCIGALGSGAVQPINAYCVGALISVYFRANEPNIKSKSRNLSLVFLGIGIFNFLTNILQHYNFSIMGERLTKRVREKILEKLMTFEIGWFDQDENTSAAICARLSTEANMVRSLVGDRMSLLVQAIFSAAFAYSVGLVLSWRLTLVMIAVQPLVIGSFYARSVLMKSMAEKARKAQREGSQLASEAVTNHKTIVAFSSQKKILGLFAATLKSPKKESARQSWISALGLFSSQFFNTASTALAYWYGGRLLTQDMISSEHIFQAFLILLFTAYIIADAGSMTSDISRGSNAVGSVIAILDRKTEIDPENKSGRDHKRRIKGKVELRSICFSYPTRPEQMILRGLSLKIDAGKTVALVGQSGSGKSTIIGLIERFYDPSTGSIHIDELDIKNYNLRWLRSQIALVSQEPTLFAGTIRENIAYGKEEAGESEIREAAVLANAHEFISGMKDEYDTYCGERGAQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSENLVQEALEKMMVGRTCIIVAHRLSTIQKANTIAVIKNGKVVEQGSHSELISMGQRGEYYSLTKSQAALNL* 1264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14664195 14670070 - Chy4G077120.1 Chy04g00994 224893

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00994 1263 ProSitePatterns ABC transporters family signature. 1158 1172 IPR017871 GO:0005524
Chy04g00994 1263 SMART AAA_5 1046 1238 IPR003593 -
Chy04g00994 1263 SMART AAA_5 382 568 IPR003593 -
Chy04g00994 1263 SUPERFAMILY ABC transporter transmembrane region 5 334 IPR036640 GO:0005524|GO:0016021
Chy04g00994 1263 Gene3D ABC transporter type 1, transmembrane domain 662 1006 IPR036640 GO:0005524|GO:0016021
Chy04g00994 1263 Gene3D - 1009 1262 IPR027417 -
Chy04g00994 1263 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1019 1255 IPR003439 GO:0005524
Chy04g00994 1263 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1012 1258 IPR027417 -
Chy04g00994 1263 CDD ABC_MTABC3_MDL1_MDL2 355 596 - -
Chy04g00994 1263 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 10 1259 - -
Chy04g00994 1263 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 346 596 IPR027417 -
Chy04g00994 1263 Pfam ABC transporter transmembrane region 697 968 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Chy04g00994 1263 Pfam ABC transporter transmembrane region 18 305 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Chy04g00994 1263 Gene3D - 345 597 IPR027417 -
Chy04g00994 1263 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 355 591 IPR003439 GO:0005524
Chy04g00994 1263 SUPERFAMILY ABC transporter transmembrane region 682 1002 IPR036640 GO:0005524|GO:0016021
Chy04g00994 1263 Gene3D ABC transporter type 1, transmembrane domain 5 603 IPR036640 GO:0005524|GO:0016021
Chy04g00994 1263 ProSitePatterns ABC transporters family signature. 494 508 IPR017871 GO:0005524
Chy04g00994 1263 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 696 983 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Chy04g00994 1263 Pfam ABC transporter 1037 1186 IPR003439 GO:0005524
Chy04g00994 1263 CDD ABC_MTABC3_MDL1_MDL2 1019 1258 - -
Chy04g00994 1263 CDD ABC_6TM_Pgp_ABCB1_D1_like 18 328 - -
Chy04g00994 1263 CDD ABC_6TM_Pgp_ABCB1_D2_like 685 1001 - -
Chy04g00994 1263 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 10 1259 IPR039421 -
Chy04g00994 1263 Pfam ABC transporter 373 522 IPR003439 GO:0005524
Chy04g00994 1263 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 19 320 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00994 K05658 ABCB1, CD243; ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:7.6.2.2] - csv:101213474 2382.06
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02277 Chy-Chr2:26820221 Chy04g00994 Chy-Chr4:14664195 6.63E-18 dispersed
Chy04g00994 Chy-Chr4:14664195 Chy10g00827 Chy-Chr10:14217446 2.32E-94 dispersed
Chy04g00994 Chy-Chr4:14664195 Chy09g00260 Chy-Chr9:2136109 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g448 . Blo03g01437 . . . . . . . . . Cma09g00928 . . . . . Bhi09g01941 . . . Hepe01g1307 Mch11g1155 . . . . . . . . . Cone9ag0100 . . . . Chy04g00994 . . . . . . . . . . . Cmo09g00924 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000338 3 4 5 4 3 4 2 4 4 4 4 4 7 4 4 8 4 5 4 4 4 4 6 4 4 4 7 6 4 8 136
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g00994 Chy_Chr04 FPKM 9.045996 9.244722 0.704363 1.425499 1.040465 0.852786 0.713698 0.122475 0.191963 0.2972