Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01011 ATGGTATCCCCCGAAAATCCCAATTGGTTGTTCGATTATGGTTTGATCGAAGACATCCCTGTACCCGATGGGAATTTCCCGGTCGCGAGCTCAAGCTTCTCTTGGGCTATTCAACCCTTTAACGGCGCCCATGATTCCGGTGTGGAAATTGATGGTTCGTTGGCAGATCTGGATGGCCGTCTAGAATCAGGCTCAAAGAAGCGGGTCAGATCTGATTCATGTAGTGCATCAAGCTCCAAAGCATGTAGGGAGAAATTGCGGAGGGATAGGCTCAATGACAAGTTTCTGGAACTGGGATCCATTTTGGATCCTGGAAGACCACCCAAAACTGACAAGGCTGCAATCTTAGTTGATGCAGTTCGATTGGTGAATCAGCTACGTAGTGAAACGCAGAAACTAAAGGAATCGAATTCAAGTCTCCAGGAGAAGATCAAAGAGTTGAAGGCTGAGAAGAACGAGCTTCGCGACGAGAAGCAGAGGCTCAAGGCAGATAAGGAGAGGCTGGAGCAGCAAGTAAAGTCCATGCCTGCTCAACAACCTGGCTTCTTACCTCCACCAATACCCACATTTCCTTCTCAGGGTCAAGCTCCTGGAAATAAGTTAGTTCCTTTCATTGGTTACCACCCGAGTGTTGCCATGTGGCAATTCATGCCACCTGCTGCGGTAGACACGTCACAGGATCACGTACTCCGGCCACCTGTTGCCTAA 708 49.01 MVSPENPNWLFDYGLIEDIPVPDGNFPVASSSFSWAIQPFNGAHDSGVEIDGSLADLDGRLESGSKKRVRSDSCSASSSKACREKLRRDRLNDKFLELGSILDPGRPPKTDKAAILVDAVRLVNQLRSETQKLKESNSSLQEKIKELKAEKNELRDEKQRLKADKERLEQQVKSMPAQQPGFLPPPIPTFPSQGQAPGNKLVPFIGYHPSVAMWQFMPPAAVDTSQDHVLRPPVA* 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14888996 14891356 + Chy4G077290.1 Chy04g01011 224910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01011 235 CDD bHLH_AtILR3_like 83 155 - -
Chy04g01011 235 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 75 146 IPR036638 GO:0046983
Chy04g01011 235 Coils Coil 123 178 - -
Chy04g01011 235 SMART finulus 81 132 IPR011598 GO:0046983
Chy04g01011 235 PANTHER BHLH TRANSCRIPTION FACTOR 1 235 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Chy04g01011 235 PANTHER TRANSCRIPTION FACTOR ILR3 1 235 - -
Chy04g01011 235 CDD bZIP 141 173 - -
Chy04g01011 235 Gene3D arf6 gtpase in complex with a specific effector, jip4 125 179 - -
Chy04g01011 235 Gene3D - 66 124 IPR036638 GO:0046983
Chy04g01011 235 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 126 IPR011598 GO:0046983
Chy04g01011 235 Pfam Helix-loop-helix DNA-binding domain 79 126 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01011 Chy-Chr4:14888996 Chy11g00586 Chy-Chr11:6690012 3.13E-88 dispersed
Chy04g01011 Chy-Chr4:14888996 Chy04g01015 Chy-Chr4:14961646 9.50E-171 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17848 PF00010 HLH 1.80E-09 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01011 - - csv:101215402 436.802