Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01012 ATGGCAAAATACGCTTTAGGGTCTGAACCAGTGGTGGGTTTGTTAACGCCATCGAAGAAGAAGGAGTATAGGGTCACCAACCGCCTTCAAGAAGGGAAAAGGCCTCTTTATGCTGTAGTTTTCAACTTCATCGACTCTCGATACTTCAATGTCTTTGCCACTGTTGGCGGCAATCGGATTACAGTTTACCAATGTCTTGAAGGGGGTGTTATAGCCGTGTTGCAATCTTACGTTGATGAAGATAAGGATGAATCTTTTTACACTGTAAGCTGGGCTTACAACGTGGATGGCTCCCCTTTTGTTGTTGCTGGTGGAATCAATGGTATAATCCGTGTTATTGATGCTGGCAGTGAAAAGATATATAAGAGTTTTGTTGGTCATGGTGATTCAATAAATGAAATCAGGACTCAGCCACTGAAGCCATCACTTGTGATCTCTGCAAGTAAAGATGAGTCTGTTCGATTATGGAATGTTCATACTGGTATTTGCATTTTGGTATTTGCTGGTGCAGGTGGTCATCGTAATGAGGTCTTAAGTGTGGATTTTCATCCATCAGATATTTATCGCATTGCTAGCTGTGGAATGGACAACACTGTAAAAATTTGGTCAATGAAAGAGTTCTGGACATACGTGGAAAAATCTTTTACCTGGACAGATCTTCCATCAAAGTTTCCCACCAAGTATGTCCAATTTCCAGTGTTCATAGCATCAGTTCATTCAAATTATGTTGATTGCAGTAGGTGGCTCGGTGATTTTATTCTTTCAAAGAGTGTTGACAATGAGATTGTGTTGTGGGAACCTAAAATGAAGGAACAGTCACCTGGAGAGGGTACTGTGGATATTCTTCAGAAGTACCCTGTTCCTGAGTGTGATATTTGGTTTATCAAGTTTTCCTGTGATTTTCATTATAATGCAGCTGCTATAGGAAACAGGGAGGGAAAAATTTTTGTTTGGGAACTTCAGTCAAGCCCCCCAGTTCTCATTGCAAGGTTGTCTCATGCCCAGTCGAAGTCTCCCATCAGACAGACAGCCATGTCCTTTGATGGAAGTATAATTTTGAGTTGCTGTGAAGATGGGACAATTTGGCGCTGGGATGCTATGACAACCACTTGTGCCATTTAG 1122 41.62 MAKYALGSEPVVGLLTPSKKKEYRVTNRLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRITVYQCLEGGVIAVLQSYVDEDKDESFYTVSWAYNVDGSPFVVAGGINGIIRVIDAGSEKIYKSFVGHGDSINEIRTQPLKPSLVISASKDESVRLWNVHTGICILVFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCSRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTVDILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSFDGSIILSCCEDGTIWRWDAMTTTCAI* 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14896435 14900585 - Chy4G077300.1 Chy04g01012 224911

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01012 373 PRINTS G protein beta WD-40 repeat signature 352 366 IPR020472 -
Chy04g01012 373 PRINTS G protein beta WD-40 repeat signature 144 158 IPR020472 -
Chy04g01012 373 PRINTS G protein beta WD-40 repeat signature 190 204 IPR020472 -
Chy04g01012 373 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 124 161 - -
Chy04g01012 373 PANTHER POLYCOMB PROTEIN 1 369 - -
Chy04g01012 373 ProSiteProfiles Trp-Asp (WD) repeats profile. 170 205 IPR001680 GO:0005515
Chy04g01012 373 Gene3D - 18 368 IPR015943 GO:0005515
Chy04g01012 373 SMART WD40_4 117 157 IPR001680 GO:0005515
Chy04g01012 373 SMART WD40_4 67 114 IPR001680 GO:0005515
Chy04g01012 373 SMART WD40_4 160 203 IPR001680 GO:0005515
Chy04g01012 373 SMART WD40_4 324 365 IPR001680 GO:0005515
Chy04g01012 373 SMART WD40_4 229 266 IPR001680 GO:0005515
Chy04g01012 373 SMART WD40_4 278 319 IPR001680 GO:0005515
Chy04g01012 373 SUPERFAMILY WD40 repeat-like 26 365 IPR036322 GO:0005515
Chy04g01012 373 PANTHER BNAA05G20190D PROTEIN 1 369 - -
Chy04g01012 373 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 170 205 - -
Chy04g01012 373 ProSiteProfiles Trp-Asp (WD) repeats profile. 124 166 IPR001680 GO:0005515
Chy04g01012 373 ProSitePatterns Trp-Asp (WD) repeats signature. 144 158 IPR019775 -
Chy04g01012 373 Pfam WD domain, G-beta repeat 122 157 IPR001680 GO:0005515
Chy04g01012 373 Pfam WD domain, G-beta repeat 171 203 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01012 K11462 EED; polycomb protein EED - csv:101214918 763.451
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01012 Chy-Chr4:14896435 Chy07g00335 Chy-Chr7:2729577 1.21E-11 dispersed
Chy04g01012 Chy-Chr4:14896435 Chy01g02055 Chy-Chr1:25383905 1.19E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g432 . . . Bda09g00384 . Bpe08g01140 . . . . . . . Car09g00842 Sed04g3180 Cpe06g00746 . Bhi09g01944 Tan01g4508 Cmetu04g2640 . Hepe01g1309 . . . . . . . . . Cone6ag0087 Cone9ag0102 . . Lsi04g01241 . Chy04g01012 . . . . . . . Bma07g01314 . . . . . . . . . . . . . . . . . Cla05g01537 Cam05g1644 Cec05g1650 . Clacu05g1638 Cmu05g1533 Cre05g1643 . . . Cme04g00806
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011571 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 0 1 2 1 1 1 1 1 1 1 1 1 1 2 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g01012 Chy_Chr04 FPKM 13.248466 13.223241 10.52275 11.035722 13.182908 9.764837 12.948926 10.129494 10.389711 10.165213