Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01020 ATGACATTTCGACAACCTATGGGTGTTGCAAAAAGGAAATGTTTGGTTGTTCTGGTGATTCTCATTTGTGCTTCTTTAGCAACTTGCTTGAAGAACCACGAGGAAGAGGAGCTGATTCTGAGTCAACTAGCTGACCCAATTACTGGGGATGTCAACACAGAGATGGCTGAGCTGTTACTGGTTAAGTGCAACTTGGATTTGTTTCAGTTAAGGGAAGCTGCAGATGGTATTGACCTCTGCTTCGAAGAAACACCGAGAAGCACAAATGGAATTAACTTTGAATGTCGGATGCTGACAAAAGAGAAAACAAACAGAATGCTAAGGGCCATGCATCCCCAGATGAAGCAAACTCTTTTAGACTGTTTAAGAAAAAAATTTCATGTCTCTGGAAAAGACTACAGCTCTGAAGCTTGGTACACCAGGTATTTGGAGTCATTGTTAATAATTCCTGGTAGTCTTAGAAGGAAGTTAAGTTCTAGATTGCTTCGAAGTGCTAAAGAACGCACTGCTCCCGCACCTAAATCTTCAGCTGATGAAAAACCTTCAAGAAAAGCTTCTAGCACAAGTGGTCAAAAAGAAAAGAAATCTAATAATAATCAAACAGTCATCATCGCTGTTGTTGTAACAGCGACAGTGACTTTTATTATTGTAGCCCTGCTATTTTTATGCTATAACAAGAGTGGCTCCAGAGTGAAGCAAAATGATGAAAATCATGAAAGGCCTCTCCTAAGCTTGAGTTTAAGTTCCTCCCCCAAATATTCTGCTTTTGGGAATTCTCTTAAGGATGACAAGCTCATGAATCAATCGTCTAGCTTGAGTCACCACCAGAGAGCTCCATCTTTGGATGGTAGCCTGCACATTGGCTCTGATGGTGAGCGTACTTCAATGCAGGGACCTCCATCTTTTGGAGCTGCTGGAATTGCCAGTAATTCATCTTTTGGATCAACGAATATGGCTGGAAGTAGTAATGGTTTGGTGCCACCTCCTCCAGGAGCATTGCCAGTCACCTCAGAAATTTTACCTCCTCTGAAGCCTCCTCCTGGCAGGGCTGTTCCCCTGCCTCCTGAACGTCCTTCGTCTTTTAAGCCCCCATCCAGCATGGCTAGTCCTCCTCCTCCACCACCTCCTGCACCACCACCACCAAGACCACCGGGAAATTCAGTTCGCCCTCCAGGACCTCCTCCTCCTCCGCCACCTATACCAGGCAAGGCAGGCCCTCGCCCACCACCACCTCCCAAAAGTGGTATTAATGCTCCTCCTCGGCCACCTCCATTAGCACACAAAGGTGCAAATCCACCTCGACCTCCAAAGCCTTTTGGTTCAGGTGATGATGAAATGGACGAATCAGGTGTTCCCAAAGCCAAATTGAAACCATTTTTCTGGGACAAAGTTCTTGCAAACCCCGACCATTCCATGGTCTGGCATCAGATAAAAGCAGGGTCATTCCAATTCAACGAGGAGATGATAGAAACTCTTTTCGGATATACGCCTGTAGATAAAACCAAAACTGAGGGCAAGAAGGAGTCATCATCACAAGATCCTGCACTACAGTACATTCAGATTATTGACTCAAAGAAATCACAAAATCTGTCCATTCTTTTGCGAGCGCTAAATGTGACAAAAGAAGAAGTTTGTGATGCGCTTCATGAAGGAACTGAACTTCCTTCCGAACTTCTTGAGAACTTGCTGAGGATGGCACCAACTCCAGAAGAAGAACTCAAGCTTAGACTGTTTAGCGGGGAACTTTCTCAACTTGGAAATGCTGAGCGTTTCCTTAAATCTTTGGTTGATATCCCATTTGCTTTCAAAAGGTTGGAATCGCTGCTTTTCATTGGCACTCTTCAGGAGGACATCGCGATCACCAAAGAGTCCTTCGTTAACTTGGAGGTTGCTTGCAAGGAACTTCGGAGCAGCAGGTTGTTCCTCAAACTTCTAGAAGCTGTTCTTAAGACGGGCAATCGAATGAACGATGGGACTTTTCGTGGTGGTGCACAAGCATTCAAATTGGACACTCTTTTAAAATTGTCCGATGTGAAAGGAAAAGATGGCAAGACTACATTATTGCACTTTGTAGTTCAGGAGATAATTCGCACAGAAGGAATAAGAGCTGCTCGGAATGGCACAGGAAGCCAGAGCTTCTCAAGCACCTCATCAAAGAATTTACTGGATGAAACTACTAATGACACCGAAGAGCATTATCGTACCTTGGGTCTTCAGGTCGTCTCGGGGTTGAGTGGCGAACTTCAGAATGTGAAGAAAGCAGCAACGATAGATGCTGATGCCTTGACTGGAACTGTTTCGAAACTTGGGCATGCACTCTTAAAGACAAGAGACTTTGTGAATAAAGACATGCGGGGTCTAGGTGAAGAGAGTCAATTTCACGAAACACTGAAAGTTTTTGTGCAGAATGCTGAGGCTGATATCATGGCCCTCCTGGAAGAAGAAAAAAGAATCATGGAATTGGTGAAAAGCACAGGCGACTACTTCCATGGAAATGCGGGAAAAGATGAGGGCTTACGGTTGTTTGTAATCGTGAGAGATTTCTTGATAATGATAGATAAGACATGCCGAGAAATAAAGGAGGCACAGAGAAAGCAGGCGAAGGGACACAGAAAGGCAGTGTCATCTTCTGATATCCACCCGCCTTCATCTTCGTCGTCTACTGATATCAATCACCACCCCCCATCGTCTACCGATATCAATCAACCCCCATTGTCTACCGATATCAGTCAACCCCCTTCAACTACAGTTTCTGATCTACGACACCCTCCTTCTCCTGATTTGAATCAGCTGATTTTCCCTGCAATCACTGATCGTCGGATGGGTAACTCAAGTTCAGATGATGAGGAGAGTCCGTAG 2859 44.81 MTFRQPMGVAKRKCLVVLVILICASLATCLKNHEEEELILSQLADPITGDVNTEMAELLLVKCNLDLFQLREAADGIDLCFEETPRSTNGINFECRMLTKEKTNRMLRAMHPQMKQTLLDCLRKKFHVSGKDYSSEAWYTRYLESLLIIPGSLRRKLSSRLLRSAKERTAPAPKSSADEKPSRKASSTSGQKEKKSNNNQTVIIAVVVTATVTFIIVALLFLCYNKSGSRVKQNDENHERPLLSLSLSSSPKYSAFGNSLKDDKLMNQSSSLSHHQRAPSLDGSLHIGSDGERTSMQGPPSFGAAGIASNSSFGSTNMAGSSNGLVPPPPGALPVTSEILPPLKPPPGRAVPLPPERPSSFKPPSSMASPPPPPPPAPPPPRPPGNSVRPPGPPPPPPPIPGKAGPRPPPPPKSGINAPPRPPPLAHKGANPPRPPKPFGSGDDEMDESGVPKAKLKPFFWDKVLANPDHSMVWHQIKAGSFQFNEEMIETLFGYTPVDKTKTEGKKESSSQDPALQYIQIIDSKKSQNLSILLRALNVTKEEVCDALHEGTELPSELLENLLRMAPTPEEELKLRLFSGELSQLGNAERFLKSLVDIPFAFKRLESLLFIGTLQEDIAITKESFVNLEVACKELRSSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGKDGKTTLLHFVVQEIIRTEGIRAARNGTGSQSFSSTSSKNLLDETTNDTEEHYRTLGLQVVSGLSGELQNVKKAATIDADALTGTVSKLGHALLKTRDFVNKDMRGLGEESQFHETLKVFVQNAEADIMALLEEEKRIMELVKSTGDYFHGNAGKDEGLRLFVIVRDFLIMIDKTCREIKEAQRKQAKGHRKAVSSSDIHPPSSSSSTDINHHPPSSTDINQPPLSTDISQPPSTTVSDLRHPPSPDLNQLIFPAITDRRMGNSSSDDEESP* 953
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15124871 15130593 + Chy4G077380.1 Chy04g01020 224919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01020 952 Coils Coil 801 821 - -
Chy04g01020 952 MobiDBLite consensus disorder prediction 877 923 - -
Chy04g01020 952 MobiDBLite consensus disorder prediction 863 952 - -
Chy04g01020 952 Pfam Formin Homology 2 Domain 452 851 IPR015425 -
Chy04g01020 952 SMART it6_source 446 867 IPR015425 -
Chy04g01020 952 MobiDBLite consensus disorder prediction 267 451 - -
Chy04g01020 952 SUPERFAMILY Formin homology 2 domain (FH2 domain) 394 870 - -
Chy04g01020 952 PANTHER FORMIN-LIKE PROTEIN 3 165 385 - -
Chy04g01020 952 PANTHER FORMIN-LIKE PROTEIN 3 9 135 - -
Chy04g01020 952 PANTHER FORMIN-LIKE PROTEIN 3 379 949 - -
Chy04g01020 952 MobiDBLite consensus disorder prediction 304 323 - -
Chy04g01020 952 ProSiteProfiles Formin homology-2 (FH2) domain profile. 446 878 IPR015425 -
Chy04g01020 952 PRINTS Proline rich extensin signature 325 346 - -
Chy04g01020 952 PRINTS Proline rich extensin signature 348 364 - -
Chy04g01020 952 PRINTS Proline rich extensin signature 390 415 - -
Chy04g01020 952 PRINTS Proline rich extensin signature 371 388 - -
Chy04g01020 952 MobiDBLite consensus disorder prediction 164 196 - -
Chy04g01020 952 Gene3D Formin, FH2 domain 451 880 IPR042201 -
Chy04g01020 952 MobiDBLite consensus disorder prediction 327 439 - -
Chy04g01020 952 PANTHER FORMIN-RELATED 379 949 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Chy04g01020 952 PANTHER FORMIN-RELATED 165 385 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Chy04g01020 952 PANTHER FORMIN-RELATED 9 135 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Chy04g01020 952 MobiDBLite consensus disorder prediction 172 190 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01020 Chy-Chr4:15124871 Chy11g00585 Chy-Chr11:6671338 0 dispersed
Chy04g01020 Chy-Chr4:15124871 Chy12g01523 Chy-Chr12:18995713 1.62E-24 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01020 - - csv:101213072 1590.47