Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01020 ATGACATTTCGACAACCTATGGGTGTTGCAAAAAGGAAATGTTTGGTTGTTCTGGTGATTCTCATTTGTGCTTCTTTAGCAACTTGCTTGAAGAACCACGAGGAAGAGGAGCTGATTCTGAGTCAACTAGCTGACCCAATTACTGGGGATGTCAACACAGAGATGGCTGAGCTGTTACTGGTTAAGTGCAACTTGGATTTGTTTCAGTTAAGGGAAGCTGCAGATGGTATTGACCTCTGCTTCGAAGAAACACCGAGAAGCACAAATGGAATTAACTTTGAATGTCGGATGCTGACAAAAGAGAAAACAAACAGAATGCTAAGGGCCATGCATCCCCAGATGAAGCAAACTCTTTTAGACTGTTTAAGAAAAAAATTTCATGTCTCTGGAAAAGACTACAGCTCTGAAGCTTGGTACACCAGGTATTTGGAGTCATTGTTAATAATTCCTGGTAGTCTTAGAAGGAAGTTAAGTTCTAGATTGCTTCGAAGTGCTAAAGAACGCACTGCTCCCGCACCTAAATCTTCAGCTGATGAAAAACCTTCAAGAAAAGCTTCTAGCACAAGTGGTCAAAAAGAAAAGAAATCTAATAATAATCAAACAGTCATCATCGCTGTTGTTGTAACAGCGACAGTGACTTTTATTATTGTAGCCCTGCTATTTTTATGCTATAACAAGAGTGGCTCCAGAGTGAAGCAAAATGATGAAAATCATGAAAGGCCTCTCCTAAGCTTGAGTTTAAGTTCCTCCCCCAAATATTCTGCTTTTGGGAATTCTCTTAAGGATGACAAGCTCATGAATCAATCGTCTAGCTTGAGTCACCACCAGAGAGCTCCATCTTTGGATGGTAGCCTGCACATTGGCTCTGATGGTGAGCGTACTTCAATGCAGGGACCTCCATCTTTTGGAGCTGCTGGAATTGCCAGTAATTCATCTTTTGGATCAACGAATATGGCTGGAAGTAGTAATGGTTTGGTGCCACCTCCTCCAGGAGCATTGCCAGTCACCTCAGAAATTTTACCTCCTCTGAAGCCTCCTCCTGGCAGGGCTGTTCCCCTGCCTCCTGAACGTCCTTCGTCTTTTAAGCCCCCATCCAGCATGGCTAGTCCTCCTCCTCCACCACCTCCTGCACCACCACCACCAAGACCACCGGGAAATTCAGTTCGCCCTCCAGGACCTCCTCCTCCTCCGCCACCTATACCAGGCAAGGCAGGCCCTCGCCCACCACCACCTCCCAAAAGTGGTATTAATGCTCCTCCTCGGCCACCTCCATTAGCACACAAAGGTGCAAATCCACCTCGACCTCCAAAGCCTTTTGGTTCAGGTGATGATGAAATGGACGAATCAGGTGTTCCCAAAGCCAAATTGAAACCATTTTTCTGGGACAAAGTTCTTGCAAACCCCGACCATTCCATGGTCTGGCATCAGATAAAAGCAGGGTCATTCCAATTCAACGAGGAGATGATAGAAACTCTTTTCGGATATACGCCTGTAGATAAAACCAAAACTGAGGGCAAGAAGGAGTCATCATCACAAGATCCTGCACTACAGTACATTCAGATTATTGACTCAAAGAAATCACAAAATCTGTCCATTCTTTTGCGAGCGCTAAATGTGACAAAAGAAGAAGTTTGTGATGCGCTTCATGAAGGAACTGAACTTCCTTCCGAACTTCTTGAGAACTTGCTGAGGATGGCACCAACTCCAGAAGAAGAACTCAAGCTTAGACTGTTTAGCGGGGAACTTTCTCAACTTGGAAATGCTGAGCGTTTCCTTAAATCTTTGGTTGATATCCCATTTGCTTTCAAAAGGTTGGAATCGCTGCTTTTCATTGGCACTCTTCAGGAGGACATCGCGATCACCAAAGAGTCCTTCGTTAACTTGGAGGTTGCTTGCAAGGAACTTCGGAGCAGCAGGTTGTTCCTCAAACTTCTAGAAGCTGTTCTTAAGACGGGCAATCGAATGAACGATGGGACTTTTCGTGGTGGTGCACAAGCATTCAAATTGGACACTCTTTTAAAATTGTCCGATGTGAAAGGAAAAGATGGCAAGACTACATTATTGCACTTTGTAGTTCAGGAGATAATTCGCACAGAAGGAATAAGAGCTGCTCGGAATGGCACAGGAAGCCAGAGCTTCTCAAGCACCTCATCAAAGAATTTACTGGATGAAACTACTAATGACACCGAAGAGCATTATCGTACCTTGGGTCTTCAGGTCGTCTCGGGGTTGAGTGGCGAACTTCAGAATGTGAAGAAAGCAGCAACGATAGATGCTGATGCCTTGACTGGAACTGTTTCGAAACTTGGGCATGCACTCTTAAAGACAAGAGACTTTGTGAATAAAGACATGCGGGGTCTAGGTGAAGAGAGTCAATTTCACGAAACACTGAAAGTTTTTGTGCAGAATGCTGAGGCTGATATCATGGCCCTCCTGGAAGAAGAAAAAAGAATCATGGAATTGGTGAAAAGCACAGGCGACTACTTCCATGGAAATGCGGGAAAAGATGAGGGCTTACGGTTGTTTGTAATCGTGAGAGATTTCTTGATAATGATAGATAAGACATGCCGAGAAATAAAGGAGGCACAGAGAAAGCAGGCGAAGGGACACAGAAAGGCAGTGTCATCTTCTGATATCCACCCGCCTTCATCTTCGTCGTCTACTGATATCAATCACCACCCCCCATCGTCTACCGATATCAATCAACCCCCATTGTCTACCGATATCAGTCAACCCCCTTCAACTACAGTTTCTGATCTACGACACCCTCCTTCTCCTGATTTGAATCAGCTGATTTTCCCTGCAATCACTGATCGTCGGATGGGTAACTCAAGTTCAGATGATGAGGAGAGTCCGTAG 2859 44.81 MTFRQPMGVAKRKCLVVLVILICASLATCLKNHEEEELILSQLADPITGDVNTEMAELLLVKCNLDLFQLREAADGIDLCFEETPRSTNGINFECRMLTKEKTNRMLRAMHPQMKQTLLDCLRKKFHVSGKDYSSEAWYTRYLESLLIIPGSLRRKLSSRLLRSAKERTAPAPKSSADEKPSRKASSTSGQKEKKSNNNQTVIIAVVVTATVTFIIVALLFLCYNKSGSRVKQNDENHERPLLSLSLSSSPKYSAFGNSLKDDKLMNQSSSLSHHQRAPSLDGSLHIGSDGERTSMQGPPSFGAAGIASNSSFGSTNMAGSSNGLVPPPPGALPVTSEILPPLKPPPGRAVPLPPERPSSFKPPSSMASPPPPPPPAPPPPRPPGNSVRPPGPPPPPPPIPGKAGPRPPPPPKSGINAPPRPPPLAHKGANPPRPPKPFGSGDDEMDESGVPKAKLKPFFWDKVLANPDHSMVWHQIKAGSFQFNEEMIETLFGYTPVDKTKTEGKKESSSQDPALQYIQIIDSKKSQNLSILLRALNVTKEEVCDALHEGTELPSELLENLLRMAPTPEEELKLRLFSGELSQLGNAERFLKSLVDIPFAFKRLESLLFIGTLQEDIAITKESFVNLEVACKELRSSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGKDGKTTLLHFVVQEIIRTEGIRAARNGTGSQSFSSTSSKNLLDETTNDTEEHYRTLGLQVVSGLSGELQNVKKAATIDADALTGTVSKLGHALLKTRDFVNKDMRGLGEESQFHETLKVFVQNAEADIMALLEEEKRIMELVKSTGDYFHGNAGKDEGLRLFVIVRDFLIMIDKTCREIKEAQRKQAKGHRKAVSSSDIHPPSSSSSTDINHHPPSSTDINQPPLSTDISQPPSTTVSDLRHPPSPDLNQLIFPAITDRRMGNSSSDDEESP* 953
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15124871 15130593 + Chy4G077380.1 Chy04g01020 224919

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01020 952 Coils Coil 801 821 - -
Chy04g01020 952 MobiDBLite consensus disorder prediction 877 923 - -
Chy04g01020 952 MobiDBLite consensus disorder prediction 863 952 - -
Chy04g01020 952 Pfam Formin Homology 2 Domain 452 851 IPR015425 -
Chy04g01020 952 SMART it6_source 446 867 IPR015425 -
Chy04g01020 952 MobiDBLite consensus disorder prediction 267 451 - -
Chy04g01020 952 SUPERFAMILY Formin homology 2 domain (FH2 domain) 394 870 - -
Chy04g01020 952 PANTHER FORMIN-LIKE PROTEIN 3 165 385 - -
Chy04g01020 952 PANTHER FORMIN-LIKE PROTEIN 3 9 135 - -
Chy04g01020 952 PANTHER FORMIN-LIKE PROTEIN 3 379 949 - -
Chy04g01020 952 MobiDBLite consensus disorder prediction 304 323 - -
Chy04g01020 952 ProSiteProfiles Formin homology-2 (FH2) domain profile. 446 878 IPR015425 -
Chy04g01020 952 PRINTS Proline rich extensin signature 325 346 - -
Chy04g01020 952 PRINTS Proline rich extensin signature 348 364 - -
Chy04g01020 952 PRINTS Proline rich extensin signature 390 415 - -
Chy04g01020 952 PRINTS Proline rich extensin signature 371 388 - -
Chy04g01020 952 MobiDBLite consensus disorder prediction 164 196 - -
Chy04g01020 952 Gene3D Formin, FH2 domain 451 880 IPR042201 -
Chy04g01020 952 MobiDBLite consensus disorder prediction 327 439 - -
Chy04g01020 952 PANTHER FORMIN-RELATED 379 949 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Chy04g01020 952 PANTHER FORMIN-RELATED 165 385 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Chy04g01020 952 PANTHER FORMIN-RELATED 9 135 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Chy04g01020 952 MobiDBLite consensus disorder prediction 172 190 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01020 - - - csv:101213072 1590.47
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01020 Chy-Chr4:15124871 Chy11g00585 Chy-Chr11:6671338 0 dispersed
Chy04g01020 Chy-Chr4:15124871 Chy12g01523 Chy-Chr12:18995713 1.62E-24 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g414 Blo03g00585 Blo03g01433 Bda07g00336 Bda09g00382 . Bpe08g01143 . . . . Cma01g01155 Cma09g00921 . Car09g00837 . Cpe06g00740 Cpe02g00746 Bhi09g01953 . . . Hepe01g1315 . . . . . . . . . . Cone9ag0106 . . Lsi04g01249 . Chy04g01020 . . . . . Bpe11g00522 . Bma07g01317 Bma14g00359 . Cmo01g01208 Cmo09g00918 . . . Car16g00567 . . . . . . . . . Cla05g01545 Cam05g1653 Cec05g1657 Cco05g1695 Clacu05g1644 Cmu05g1539 Cre05g1650 . . . Cme04g00799
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy04g00807 . 181 1055 FH2 protein (formin) Gene Family AT3G25500 50.7 2.7e-187 652.9
Chy10g00056 . 467 943 FH2 protein (formin) Gene Family AT3G25500 65.6 3.6e-163 572.8
Chy11g00235 . 475 894 FH2 protein (formin) Gene Family AT3G25500 63.5 1.0e-141 501.5
Chy08g01021 . 488 880 FH2 protein (formin) Gene Family AT3G25500 51.2 2.7e-102 370.5
Chy04g00807 . 623 1072 FH2 protein (formin) Gene Family AT2G43800 58.7 6.4e-137 485.3
Chy11g00235 . 475 910 FH2 protein (formin) Gene Family AT2G43800 55.0 1.5e-125 447.6
Chy11g00585 . 322 622 FH2 protein (formin) Gene Family AT4G15200 52.2 5.1e-53 205.7
Chy04g01020 . 440 586 FH2 protein (formin) Gene Family AT4G15200 65.5 1.1e-47 188.0
Chy04g01020 . 4 949 FH2 protein (formin) Gene Family AT5G54650 50.7 2.2e-177 619.8
Chy11g00585 . 476 939 FH2 protein (formin) Gene Family AT5G54650 63.3 2.9e-161 566.2
Chy04g00807 . 629 1030 FH2 protein (formin) Gene Family AT5G54650 50.4 2.3e-102 370.5
Chy11g00235 . 36 913 FH2 protein (formin) Gene Family AT5G67470 57.3 3.7e-233 805.1
Chy04g00807 . 610 1072 FH2 protein (formin) Gene Family AT5G67470 58.7 7.9e-135 478.4
Chy10g00056 . 505 925 FH2 protein (formin) Gene Family AT5G67470 63.0 1.9e-128 457.2
Chy08g01021 . 488 882 FH2 protein (formin) Gene Family AT5G67470 51.9 2.9e-105 380.2
Chy10g00942 . 328 815 FH2 protein (formin) Gene Family AT1G59910 52.5 3.3e-128 456.4
Chy04g00807 . 650 1031 FH2 protein (formin) Gene Family AT5G48360 52.1 4.2e-100 362.8
Chy11g00235 . 496 871 FH2 protein (formin) Gene Family AT5G48360 50.3 3.9e-90 329.7
Chy11g00235 . 472 870 FH2 protein (formin) Gene Family AT3G05470 52.2 2.6e-106 383.6
Chy04g01020 . 446 860 FH2 protein (formin) Gene Family AT3G05470 50.7 5.8e-106 382.5
Chy04g00803 . 932 1243 FH2 protein (formin) Gene Family AT1G42980 50.2 6.1e-68 254.6
Chy04g00803 . 1 1250 FH2 protein (formin) Gene Family AT1G31810 69.2 0.0e+00 1230.7
Chy02g02475 CCT 1 376 FH2 protein (formin) Gene Family AT1G31810 54.5 1.7e-127 454.5
Chy07g00331 . 1075 1397 FH2 protein (formin) Gene Family AT5G07650 63.8 7.7e-110 395.2
Chy12g01523 CCT 1678 1959 FH2 protein (formin) Gene Family AT5G07650 70.9 1.7e-109 394.0
Chy02g02115 . 986 1305 FH2 protein (formin) Gene Family AT5G07650 62.0 1.5e-108 391.0
Chy04g00803 . 916 1247 FH2 protein (formin) Gene Family AT5G07650 59.0 1.8e-106 384.0
Chy12g01523 CCT 1601 1959 FH2 protein (formin) Gene Family AT5G07770 63.9 6.7e-119 424.9
Chy07g00331 . 1000 1389 FH2 protein (formin) Gene Family AT5G07770 58.6 1.5e-118 423.7
Chy02g02115 . 909 1297 FH2 protein (formin) Gene Family AT5G07770 56.7 2.0e-115 413.3
Chy04g00803 . 852 1241 FH2 protein (formin) Gene Family AT5G07770 55.2 2.2e-114 409.8
Chy07g00331 . 992 1400 FH2 protein (formin) Gene Family AT3G32400 74.8 3.0e-168 588.6
Chy02g02115 . 893 1306 FH2 protein (formin) Gene Family AT3G32400 66.1 7.6e-148 520.8
Chy04g00803 . 852 1246 FH2 protein (formin) Gene Family AT3G32400 66.2 2.4e-141 499.2
Chy12g01523 CCT 1571 1962 FH2 protein (formin) Gene Family AT3G32400 57.8 6.1e-121 431.4
Chy07g00331 . 1 1400 FH2 protein (formin) Gene Family AT2G25050 52.9 0.0e+00 1152.9
Chy02g02115 . 47 1306 FH2 protein (formin) Gene Family AT2G25050 50.7 4.5e-284 974.5
Chy02g02475 CCT 1 374 FH2 protein (formin) Gene Family AT2G25050 63.6 9.5e-141 498.4
Chy07g00331 . 1001 1390 FH2 protein (formin) Gene Family AT5G07780 54.4 3.3e-105 379.0
Chy12g01523 CCT 1602 1959 FH2 protein (formin) Gene Family AT5G07780 56.7 2.7e-102 369.4
Chy04g00803 . 853 1242 FH2 protein (formin) Gene Family AT5G07780 52.5 1.3e-101 367.1
Chy02g02115 . 916 1297 FH2 protein (formin) Gene Family AT5G07780 53.3 4.2e-100 362.1
Chy02g02475 CCT 1 662 FH2 protein (formin) Gene Family AT5G07740 59.3 7.6e-197 685.3
Chy07g00331 . 1074 1397 FH2 protein (formin) Gene Family AT5G07760 65.5 4.9e-110 396.0
Chy02g02115 . 985 1305 FH2 protein (formin) Gene Family AT5G07760 64.4 8.4e-110 395.2
Chy12g01523 CCT 1677 1959 FH2 protein (formin) Gene Family AT5G07760 71.4 7.1e-109 392.1
Chy04g00803 . 926 1247 FH2 protein (formin) Gene Family AT5G07760 60.4 1.1e-104 378.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001056 4 3 4 4 4 2 4 2 2 2 2 2 4 2 2 3 2 4 4 2 2 2 2 2 3 2 2 3 3 2 81
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g01020 Chy_Chr04 FPKM 47.89109 51.759407 47.138081 48.035076 26.395594 31.697733 30.002497 68.680588 73.208092 66.026627