Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01021 ATGGCCGGCAGAGGCAAAACCCTCGGATCCGGAGCCGCCAAGAAGGCCACCTCCAGGAGTAGTAAAGCCGGCCTCCAGTTTCCCGTCGGTCGTATTGCTCGTTTTCTTAAGGCCGGCAAGTACGCCGAGCGTGTCGGTGCCGGTGCTCCCGTCTATCTTGCCGCTGTTCTTGAATACCTCGCCGCTGAGGTTTTGGAACTCGCTGGAAACGCTGCTAGGGACAACAAGAAGACGCGTATTGTGCCTCGTCATATTCAGCTTGCTGTACGTAACGATGAAGAACTCAGCAAGCTTTTGGGAGATGTGACTATTGCTAACGGTGGAGTTATGCCTAACATTCACAATCTGCTTCTGCCCAAGAAAACAGGGACTTCATCGAAGAACGCTGGTGGTGACGATGAACCCTAG 408 53.68 MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSSKNAGGDDEP* 136
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15132412 15133036 - Chy4G077390.1 Chy04g01021 224920

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01021 135 CDD H2A 9 121 IPR002119 GO:0000786|GO:0003677|GO:0030527
Chy04g01021 135 Pfam C-terminus of histone H2A 93 127 IPR032454 -
Chy04g01021 135 SMART h2a4 4 124 IPR002119 GO:0000786|GO:0003677|GO:0030527
Chy04g01021 135 ProSitePatterns Histone H2A signature. 23 29 IPR032458 -
Chy04g01021 135 Pfam Core histone H2A/H2B/H3/H4 13 90 IPR007125 GO:0003677
Chy04g01021 135 Gene3D Histone, subunit A 1 129 IPR009072 GO:0046982
Chy04g01021 135 SUPERFAMILY Histone-fold 9 125 IPR009072 GO:0046982
Chy04g01021 135 PANTHER HISTONE H2A 2 132 IPR002119 GO:0000786|GO:0003677|GO:0030527
Chy04g01021 135 PRINTS Histone H2A signature 15 37 IPR002119 GO:0000786|GO:0003677|GO:0030527
Chy04g01021 135 PRINTS Histone H2A signature 44 59 IPR002119 GO:0000786|GO:0003677|GO:0030527
Chy04g01021 135 PRINTS Histone H2A signature 59 72 IPR002119 GO:0000786|GO:0003677|GO:0030527
Chy04g01021 135 PRINTS Histone H2A signature 73 87 IPR002119 GO:0000786|GO:0003677|GO:0030527
Chy04g01021 135 PRINTS Histone H2A signature 101 119 IPR002119 GO:0000786|GO:0003677|GO:0030527
Chy04g01021 135 PANTHER HISTONE H2A.6 2 132 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01021 K11251 H2A; histone H2A - csv:101216121 239.965
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g01113 Chy-Chr2:7886186 Chy04g01021 Chy-Chr4:15132412 4.54E-69 dispersed
Chy04g01021 Chy-Chr4:15132412 Chy08g00776 Chy-Chr8:15428722 3.42E-58 dispersed
Chy04g01021 Chy-Chr4:15132412 Chy11g01278 Chy-Chr11:18981535 1.27E-60 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g413 Blo03g00586 Blo03g01432 Bda07g00335 Bda09g00381 Bpe09g00199 Bpe08g01144 . Bma13g01022 . . Cma01g01156 Cma09g00920 . Car09g00836 Sed07g2650 Cpe06g00739 Cpe02g00745 Bhi09g01954 Tan01g4500 Cmetu04g2314 . Hepe01g1316 Mch11g1147 . . . . . . . . . Cone9ag0107 . . Lsi04g01250 . Chy04g01021 . . Blo10g00802 Bda05g00738 . Bpe11g00521 . Bma07g01318 Bma14g00360 . Cmo01g01210 Cmo09g00916 . . . Car16g00568 Cpe14g00710 . . . . . . . . Cla05g01546 Cam05g1654 Cec05g1658 Cco05g1696 Clacu05g1645 Cmu05g1540 Cre05g1651 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003054 3 1 2 3 3 1 3 1 1 1 1 1 3 0 1 3 1 2 3 1 1 2 2 1 1 1 2 2 2 1 50
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g01021 Chy_Chr04 FPKM 16.804964 23.235968 39.746086 41.431198 7.930141 9.159021 6.933275 87.789528 93.60939 91.861855