Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01029 ATGGCTCTCAGATCGGCGGCGGCGTCGGCTCCTCGGAGTTTGAGGAAACTCATTACATGTACCTCAACTCGTACTCTACCGATAATCTCCCAGGCTATTCATGATTGGGAGAAACCGGAGCCCAGCCCCAATGCTTTCCTTTCTGGCCGCCTGTTCTCCAGCGCTTCTACTTCTAGTTTCATTCCTCCGCCGCTCCCTCCCTCGGCTCAGCAGCGTGAGGTGGCTGAGCCTAGTACTAACCTTTTCGTTTCCGGCCTCAGTAAACGCACTACTACCGAAAAACTTCATGAGGCCTTTGCGAAGTTTGGAGAAGTTGTTCATGCAAGAGTTGTAACTGATCGAGTGACTGGATATTCTAAAGGATTTGGCTTTGTTAAATATGCCACTTTGGAGGATGCGGCTAAAGGCATAGAGGGCATGGATGGCAAGTTCCTGGATGGTTGGGTTATATTTGCTGAGTATGCAAGGCCAAGACCACCTCCCGAGAACAACAATGGTTTTGCCCCATATGGCCGTCGAGATTAA 525 50.29 MALRSAAASAPRSLRKLITCTSTRTLPIISQAIHDWEKPEPSPNAFLSGRLFSSASTSSFIPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPENNNGFAPYGRRD* 175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15290585 15293146 - Chy4G077470.1 Chy04g01029 224928

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01029 174 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 81 147 IPR000504 GO:0003723
Chy04g01029 174 PANTHER TRANSFORMER-2-RELATED 50 164 - -
Chy04g01029 174 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 79 157 IPR000504 GO:0003723
Chy04g01029 174 SUPERFAMILY RNA-binding domain, RBD 60 167 IPR035979 GO:0003676
Chy04g01029 174 SMART rrm1_1 80 153 IPR000504 GO:0003723
Chy04g01029 174 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL-LIKE 50 164 - -
Chy04g01029 174 Gene3D - 66 174 IPR012677 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01029 - - - csv:101217072 330.102
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g01485 Chy-Chr2:12173601 Chy04g01029 Chy-Chr4:15290585 3.86E-12 dispersed
Chy04g01029 Chy-Chr4:15290585 Chy08g00775 Chy-Chr8:15424759 1.11E-27 dispersed
Chy07g00559 Chy-Chr7:4751130 Chy04g01029 Chy-Chr4:15290585 1.21E-12 dispersed
Chy12g00254 Chy-Chr12:2834886 Chy04g01029 Chy-Chr4:15290585 1.79E-11 dispersed
Chy04g01029 Chy-Chr4:15290585 Chy12g01500 Chy-Chr12:18831683 1.67E-21 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g394 . . . Bda09g00380 . Bpe08g01145 . . . . Cma01g01162 Cma09g00914 . Car09g00831 Sed14g0466 Cpe06g00736 Cpe02g00740 Bhi09g01960 Tan01g4493 Cmetu08g1286 . Hepe01g1323 Mch11g1137 . . . . . . . . . . . Cone15ag1130 Lsi04g01255 . Chy04g01029 . . . . . . . Bma07g01319 Bma14g00366 . Cmo01g01216 Cmo09g00908 . . . Car16g00574 . . . . . . . . . Cla05g01553 Cam05g1661 Cec05g1666 Cco05g1706 Clacu05g1655 Cmu05g1549 Cre05g1661 . . . Cme04g00784
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005243 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 2 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g01029 Chy_Chr04 FPKM 27.250088 29.858723 11.807337 10.959023 25.293114 26.310526 26.350567 4.07537 2.791382 2.890077