Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01052 ATGGCTTCTTCTTCTTCTACATCCACGAACACAAGCATGTCGGGGGGAGGTGGCAGCAGTGGCAGTGGCGGTGGCGGTGGCGGTGGTTCGCCGTGTGGAGCATGCAAGTTTCTAAGGAGAAAATGTGTGGCTGATTGTATATTTGCTCCTTATTTTTGTTCAGAACAAGGGGCTGCAAGATTTGCTGCCATTCATAAAGTGTTTGGAGCAAGTAATGTCTCAAAGTTGTTGCTTCATGTTCCTGTTCATGATCGTTGTGAAGCTGTTGTTACTATTGCCTATGAAGCTCAAGCAAGGATTCACGATCCTGTTTATGGTTGTGTTGCTCATATTTTTGCTCTTCAACAACAGACTTCGAGACAAACAGACGTTCTGAATTACAAGTTTGAACTGAAAGAATTTTTTTTTTTTTTTTTTTGGTTTTTGAAGGTGGCATACTTACAAACACAGCTGATGCATGCCAAGGCTCAACTTGCACAAACCCTAATGGATTCAGGAAGTAATATGGAGATTCAATGGACAGGCGATTTCAATAACAATCTCTCCAATGGATCAATTCCAAGTAATAATTATCAAACTCAAACTATGAACAACCCAACCCCACAAAGCTCTCTAGAATCAGTTGCCAACAATGATGAAGCATTGTTATTCATTAATCAAAATCAATTATTTCATGAGAGCCAATTTAGCAGATCATCACAAGAACCTCAATTTCTTCAACCATTTCCCAGAAAAAAATTACCTTCTTCTTCTCATGCTGATCTTGGGGAACTCCATGCTTTGGCCCTTAGAATGATGAGAAACTAA 807 40.02 MASSSSTSTNTSMSGGGGSSGSGGGGGGGSPCGACKFLRRKCVADCIFAPYFCSEQGAARFAAIHKVFGASNVSKLLLHVPVHDRCEAVVTIAYEAQARIHDPVYGCVAHIFALQQQTSRQTDVLNYKFELKEFFFFFFWFLKVAYLQTQLMHAKAQLAQTLMDSGSNMEIQWTGDFNNNLSNGSIPSNNYQTQTMNNPTPQSSLESVANNDEALLFINQNQLFHESQFSRSSQEPQFLQPFPRKKLPSSSHADLGELHALALRMMRN* 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15572778 15574318 + Chy4G077700.1 Chy04g01052 224951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01052 268 MobiDBLite consensus disorder prediction 1 19 - -
Chy04g01052 268 MobiDBLite consensus disorder prediction 1 25 - -
Chy04g01052 268 PANTHER LOB DOMAIN-CONTAINING PROTEIN 16 143 267 - -
Chy04g01052 268 PANTHER LOB DOMAIN-CONTAINING PROTEIN 16 25 131 - -
Chy04g01052 268 Pfam Lateral organ boundaries (LOB) domain 31 123 IPR004883 -
Chy04g01052 268 ProSiteProfiles LOB domain profile. 30 131 IPR004883 -
Chy04g01052 268 PANTHER LOB DOMAIN CONTAINING PROTEIN 25 131 - -
Chy04g01052 268 PANTHER LOB DOMAIN CONTAINING PROTEIN 143 267 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01052 Chy-Chr4:15572778 Chy06g00237 Chy-Chr6:1572197 1.52E-46 dispersed
Chy12g01247 Chy-Chr12:17109983 Chy04g01052 Chy-Chr4:15572778 1.90E-32 dispersed
Chy04g01052 Chy-Chr4:15572778 Chy04g01053 Chy-Chr4:15596263 1.06E-45 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17851 PF03195 LOB 1.70E-34 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01052 K13944 - csv:101214521 412.535