Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01053 ATGACGGGGTCTGGTTCTCCTTGTGGAGCTTGTAAATTCTTGAGAAGAAAATGTGTAAGAGGATGTGTTTTTGCACCATATTTTTGCCATGAACAAGGTGCTACTCATTTTGCTGCCATTCATAAAGTGTTTGGAGCAAGTAATGTTTCTAAGCTTCTTGCTCGTCTTCCTATTACTGAAAGATGTGAGGCTGCTGTTACTATTTCTTATGAAGCTCAAGCTAGGCTTCAAGATCCTATTTATGGCTGTGTTGTGAGTCTTCAGGCACAACTTGCTTCTTTGAAGGAACAAGCAGCGGAAAGCATTATGAACGCGTCCAGTAACGTGGGCGGGGTGAACGAGAAGGTCAATAGTAGAAAGGTTCCTTCTCATCCCCAAGATCTCCATAGTTGGTTTCAATCGGAGCAACCAAATGTAACACTTGAGTTCAATCCAAATCCGACTCCGAATAATAATTGTGCATCAAACACTAATTATTATGATGAGAATTATCGCATTATGGTGAATTCACAATCCAATGGGAACTATGAGAACCATCACATTGCAAAAATGGAGGAAAGTGGATCATATGGAAGCTTTGAAGAAACCTCAGGCTATTCAATGTATACTCTCGATCAATTGCATTCAAATGTTCAACAATGGAGCTTCAGTGATTCAGTTGATGATTTACAATCAGTTGCTTTTGGCAATAGACATTGGTGA 702 39.89 MTGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLARLPITERCEAAVTISYEAQARLQDPIYGCVVSLQAQLASLKEQAAESIMNASSNVGGVNEKVNSRKVPSHPQDLHSWFQSEQPNVTLEFNPNPTPNNNCASNTNYYDENYRIMVNSQSNGNYENHHIAKMEESGSYGSFEETSGYSMYTLDQLHSNVQQWSFSDSVDDLQSVAFGNRHW* 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15596263 15597447 - Chy4G077710.1 Chy04g01053 224952

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01053 233 ProSiteProfiles LOB domain profile. 6 109 IPR004883 -
Chy04g01053 233 Coils Coil 84 104 - -
Chy04g01053 233 PANTHER LOB DOMAIN-CONTAINING PROTEIN-RELATED 1 230 - -
Chy04g01053 233 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 230 - -
Chy04g01053 233 Pfam Lateral organ boundaries (LOB) domain 7 98 IPR004883 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01053 K13945 LBD29; LOB domain-containing protein 29 - csv:101214764 475.322
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01472 Chy-Chr1:20462152 Chy04g01053 Chy-Chr4:15596263 3.84E-51 dispersed
Chy04g01053 Chy-Chr4:15596263 Chy04g01614 Chy-Chr4:22594907 8.87E-43 dispersed
Chy04g01052 Chy-Chr4:15572778 Chy04g01053 Chy-Chr4:15596263 1.06E-45 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g531 Blo05g00396 Blo06g00409 . . . Bpe06g00431 Bma10g00422 . . . Cma02g01755 Cma19g00080 Car02g01504 . . . Cpe15g00070 . . . . . . . . . . . . . . . . . . . . Chy04g01053 . . . Bda05g00845 . Bpe10g00374 . . . . Cmo02g01800 Cmo19g00091 . . . . Cpe05g00056 . . . . . . . . Cla07g00087 Cam07g0091 Cec07g0123 Cco07g0095 Clacu07g0084 Cmu07g0148 Cre07g0456 Lsi05g01004 Csa03g02257 . Cme04g01036
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy05g00814 . 1 214 AS2 family AT1G65620 66.7 7.0e-68 253.8
Chy02g02604 CCT,ECH 27 202 AS2 family AT1G65620 54.0 3.4e-46 181.8
Chy04g01431 . 17 127 AS2 family AT1G65620 70.3 2.0e-43 172.6
Chy05g00814 . 4 138 AS2 family AT5G66870 68.4 1.7e-44 176.8
Chy02g02604 CCT,ECH 25 137 AS2 family AT5G66870 68.1 2.2e-39 159.8
Chy04g01431 . 21 127 AS2 family AT5G66870 68.2 2.8e-39 159.5
Chy05g00814 . 6 112 AS2 family AT2G23660 69.2 7.4e-40 161.4
Chy02g02604 CCT,ECH 32 137 AS2 family AT2G23660 64.2 1.8e-38 156.8
Chy04g01431 . 21 137 AS2 family AT2G23660 58.1 2.0e-37 153.3
Chy04g01431 . 18 128 AS2 family AT3G27650 84.7 1.9e-52 202.2
Chy02g02604 CCT,ECH 28 138 AS2 family AT3G27650 78.4 1.9e-47 185.7
Chy05g00814 . 3 112 AS2 family AT3G27650 68.2 6.9e-42 167.2
Chy12g01247 CCT,ECH 7 98 AS2 family AT3G27650 78.3 1.2e-38 156.4
Chy02g02604 CCT,ECH 27 137 AS2 family AT5G63090 93.7 4.0e-57 218.0
Chy04g01431 . 16 139 AS2 family AT5G63090 78.2 5.0e-52 201.1
Chy05g00814 . 3 112 AS2 family AT5G63090 74.5 2.0e-45 179.1
Chy12g01247 CCT,ECH 7 102 AS2 family AT5G63090 82.3 3.9e-44 174.9
Chy11g01024 . 14 117 AS2 family AT5G63090 67.3 1.2e-37 153.3
Chy11g01024 . 10 125 AS2 family AT2G30130 72.4 6.2e-45 177.6
Chy01g00877 . 17 128 AS2 family AT2G30130 69.6 2.2e-42 169.1
Chy02g02604 CCT,ECH 32 153 AS2 family AT2G30130 61.5 1.1e-38 156.8
Chy10g00333 . 9 120 AS2 family AT2G30130 67.0 7.3e-38 154.1
Chy05g00814 . 7 109 AS2 family AT2G30130 67.0 8.1e-37 150.6
Chy04g01431 . 22 125 AS2 family AT2G30130 65.4 1.1e-36 150.2
Chy11g01024 . 1 171 AS2 family AT1G31320 73.1 2.5e-61 231.9
Chy01g00877 . 19 132 AS2 family AT1G31320 76.3 5.9e-47 184.1
Chy10g00333 . 18 130 AS2 family AT1G31320 63.7 6.5e-38 154.1
Chy12g00474 . 11 119 AS2 family AT1G31320 72.1 5.5e-37 151.0
Chy02g02604 CCT,ECH 33 144 AS2 family AT1G31320 62.5 7.2e-37 150.6
Chy12g00863 CCT,ECH 22 137 AS2 family AT2G28500 70.7 6.3e-44 174.5
Chy11g01024 . 13 120 AS2 family AT2G28500 67.6 7.4e-37 151.0
Chy12g00863 CCT,ECH 22 137 AS2 family AT1G07900 65.5 2.2e-39 159.1
Chy11g01024 . 6 171 AS2 family AT1G16530 57.1 1.5e-47 186.0
Chy01g00877 . 21 127 AS2 family AT1G16530 68.5 3.3e-39 158.3
Chy10g00333 . 1 127 AS2 family AT2G30340 81.3 2.2e-56 216.1
Chy10g00333 . 2 127 AS2 family AT2G40470 87.3 2.7e-59 225.3
Chy11g01024 . 11 121 AS2 family AT2G40470 65.8 3.6e-40 161.8
Chy01g00877 . 23 127 AS2 family AT2G40470 67.6 2.6e-38 155.6
Chy03g00195 . 1 112 AS2 family AT3G11090 82.1 2.1e-46 182.2
Chy01g01472 . 6 117 AS2 family AT2G42440 70.5 2.3e-41 166.0
Chy04g01053 . 1 107 AS2 family AT2G42440 70.1 8.9e-41 164.1
Chy11g01987 . 29 138 AS2 family AT2G42440 65.2 2.7e-37 152.5
Chy01g01472 . 1 125 AS2 family AT3G58190 74.8 8.0e-49 190.7
Chy04g01053 . 4 162 AS2 family AT3G58190 55.2 1.0e-43 173.7
Chy11g01987 . 29 127 AS2 family AT3G58190 74.7 5.2e-40 161.4
Chy04g01052 . 30 132 AS2 family AT3G58190 70.9 1.7e-38 156.4
Chy06g00237 CCT 18 135 AS2 family AT3G58190 61.9 1.2e-36 150.2
Chy04g01052 . 30 269 AS2 family AT2G42430 50.2 1.8e-49 193.0
Chy11g01987 . 16 131 AS2 family AT2G42430 69.0 6.9e-41 164.5
Chy06g00237 CCT 16 126 AS2 family AT2G42430 65.8 2.4e-38 156.0
Chy01g01472 . 11 113 AS2 family AT2G42430 69.9 4.6e-37 151.8
Chy11g01987 . 29 221 AS2 family AT4G00220 64.1 6.8e-59 224.2
Chy06g00237 CCT 24 187 AS2 family AT4G00220 55.2 1.4e-43 173.3
Chy11g01986 CCT 10 193 AS2 family AT4G00220 51.8 3.9e-38 155.2
Chy11g01987 . 29 241 AS2 family AT2G45420 69.2 6.2e-72 267.7
Chy06g00237 CCT 24 197 AS2 family AT2G45420 55.5 1.3e-50 196.8
Chy01g01472 . 11 117 AS2 family AT2G45420 69.2 4.8e-40 161.8
Chy04g01052 . 31 127 AS2 family AT2G45420 77.3 2.4e-39 159.5
Chy04g01614 . 30 119 AS2 family AT2G45420 78.9 1.3e-37 153.7
Chy04g01614 . 30 143 AS2 family AT3G03760 78.9 8.7e-45 177.6
Chy11g01987 . 29 130 AS2 family AT3G03760 80.4 2.2e-40 162.9
Chy11g01987 . 29 139 AS2 family AT4G00210 73.0 1.3e-43 173.3
Chy06g00237 CCT 16 133 AS2 family AT4G00210 63.0 1.1e-40 163.7
Chy01g01472 . 1 115 AS2 family AT4G00210 61.7 8.3e-38 154.1
Chy11g01987 . 29 224 AS2 family AT2G45410 51.0 1.5e-46 183.0
Chy06g00237 CCT 11 143 AS2 family AT2G45410 60.4 6.3e-42 167.5
Chy10g00526 . 7 156 AS2 family AT5G06080 58.0 2.2e-44 175.6
Chy01g02202 . 30 138 AS2 family AT3G13850 76.1 2.1e-43 172.9
Chy02g02365 . 1 162 AS2 family AT1G68510 61.8 2.3e-54 209.1
Chy10g01149 . 1 136 AS2 family AT1G68510 64.7 1.1e-48 190.3
Chy02g00852 . 1 104 AS2 family AT1G68510 63.5 1.6e-39 159.8
Chy02g02365 . 1 140 AS2 family AT1G67100 71.8 1.7e-60 229.6
Chy10g01149 . 1 132 AS2 family AT1G67100 67.9 2.4e-51 199.1
Chy02g00852 . 1 110 AS2 family AT1G67100 66.4 3.7e-44 175.3
Chy02g02365 . 1 167 AS2 family AT3G02550 67.6 3.1e-63 238.8
Chy10g01149 . 1 141 AS2 family AT3G02550 64.8 2.8e-48 189.1
Chy02g00852 . 1 136 AS2 family AT3G02550 55.1 3.7e-40 162.2
Chy02g00852 . 1 234 AS2 family AT5G67420 57.5 9.4e-70 260.4
Chy07g00181 . 1 118 AS2 family AT5G67420 59.1 2.0e-40 162.9
Chy02g02365 . 3 112 AS2 family AT5G67420 61.8 2.7e-40 162.5
Chy10g01149 . 3 106 AS2 family AT5G67420 62.5 3.3e-38 155.6
Chy02g00852 . 1 234 AS2 family AT3G49940 59.7 8.4e-71 263.8
Chy02g02365 . 3 112 AS2 family AT3G49940 62.7 2.0e-40 162.9
Chy10g01149 . 3 106 AS2 family AT3G49940 65.4 5.5e-38 154.8
Chy02g00852 . 1 234 AS2 family AT4G37540 57.3 6.4e-68 254.2
Chy02g02365 . 3 113 AS2 family AT4G37540 63.1 5.7e-40 161.4
Chy10g01149 . 3 126 AS2 family AT4G37540 56.5 2.0e-37 152.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012038 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17852 PF03195 LOB 1.00E-30 No_clan Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g01053 Chy_Chr04 FPKM 11.311131 12.239009 12.08563 13.652111 12.147214 9.473845 14.85001 21.480574 19.824703 22.326391