Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01053 ATGACGGGGTCTGGTTCTCCTTGTGGAGCTTGTAAATTCTTGAGAAGAAAATGTGTAAGAGGATGTGTTTTTGCACCATATTTTTGCCATGAACAAGGTGCTACTCATTTTGCTGCCATTCATAAAGTGTTTGGAGCAAGTAATGTTTCTAAGCTTCTTGCTCGTCTTCCTATTACTGAAAGATGTGAGGCTGCTGTTACTATTTCTTATGAAGCTCAAGCTAGGCTTCAAGATCCTATTTATGGCTGTGTTGTGAGTCTTCAGGCACAACTTGCTTCTTTGAAGGAACAAGCAGCGGAAAGCATTATGAACGCGTCCAGTAACGTGGGCGGGGTGAACGAGAAGGTCAATAGTAGAAAGGTTCCTTCTCATCCCCAAGATCTCCATAGTTGGTTTCAATCGGAGCAACCAAATGTAACACTTGAGTTCAATCCAAATCCGACTCCGAATAATAATTGTGCATCAAACACTAATTATTATGATGAGAATTATCGCATTATGGTGAATTCACAATCCAATGGGAACTATGAGAACCATCACATTGCAAAAATGGAGGAAAGTGGATCATATGGAAGCTTTGAAGAAACCTCAGGCTATTCAATGTATACTCTCGATCAATTGCATTCAAATGTTCAACAATGGAGCTTCAGTGATTCAGTTGATGATTTACAATCAGTTGCTTTTGGCAATAGACATTGGTGA 702 39.89 MTGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLARLPITERCEAAVTISYEAQARLQDPIYGCVVSLQAQLASLKEQAAESIMNASSNVGGVNEKVNSRKVPSHPQDLHSWFQSEQPNVTLEFNPNPTPNNNCASNTNYYDENYRIMVNSQSNGNYENHHIAKMEESGSYGSFEETSGYSMYTLDQLHSNVQQWSFSDSVDDLQSVAFGNRHW* 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15596263 15597447 - Chy4G077710.1 Chy04g01053 224952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01053 233 ProSiteProfiles LOB domain profile. 6 109 IPR004883 -
Chy04g01053 233 Coils Coil 84 104 - -
Chy04g01053 233 PANTHER LOB DOMAIN-CONTAINING PROTEIN-RELATED 1 230 - -
Chy04g01053 233 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 230 - -
Chy04g01053 233 Pfam Lateral organ boundaries (LOB) domain 7 98 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01472 Chy-Chr1:20462152 Chy04g01053 Chy-Chr4:15596263 3.84E-51 dispersed
Chy04g01053 Chy-Chr4:15596263 Chy04g01614 Chy-Chr4:22594907 8.87E-43 dispersed
Chy04g01052 Chy-Chr4:15572778 Chy04g01053 Chy-Chr4:15596263 1.06E-45 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17852 PF03195 LOB 1.00E-30 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01053 K13945 - csv:101214764 475.322