Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01054 ATGTTCTCATTTGTGACTACCAACGCTCTTAAACAGTTAACAAAAAGCATTGGCAACTTTGTAAGTCCTCCTTCAATCTCAATGCCTCTTCAACCACCATCTCGTCCTTCTTTCAAGCAAACTCTGCTTAATCGAATCAAAAACTGTTCCACCATAAACGAACTGCATGGTTTATGTGCTTCTATGATCAAAACTAATGCAATCCAAGATTGTTTTCTGGTGCATCAATTTATTAGCGCGTCGTTTGCTTTTAACTCTGTACATTACCCAGTTTTCGCCTTTACCCAGATGGAAAATCCTAATGTTTTTGTGTATAATGCGATGATTAAGGGATTTGTATACTGTGGGTACCCATTTCGTGCTTTACAATGTTATGTACATATGTTGGAAGGATCGAACGTCTTGCCAACTAGTTATACGTTTTCTTCGTTGGTTAAAGCTTGCACCTTTATGTGTGCTGTTGAGTTGGGACAGATGGTGCATTGTCACGTTTGGAAGAAGGGGTTTGAATCCCATTTGTTTGTTCAAACTGCTTTGGTTGATTTTTACTCAAAGTTGGAGATACTTAGTGAGGCAAGAAAGGTGTTTGATGAAATGTGTGAAAGAGATGCTTTTGCATGGACTGCTATGGTTTCTGCTCTAGCTCGTGTTGGAGATATGGATTCCGCTAGGAAGTTGTTTGAGGAGATGCCTGAAAGGAATACTGCAACTTGGAATACCATGATTGACGGCTATGCAAGATTGGGAAATGTGGAGTCTGCAGAGCTTCTGTTCAATCAGATGCCAACCAAGGATATAATCTCCTGGACAACCATGATCACTTGTTATTCTCAGAACAAGCAATATCAAGATGCATTGGCGATTTATAGTGAGATGAGATTGAATGGGATTATTCCCGATGGGGTAACAATGTCAACTGTTGTTTCAGCTTGCGCCCACATTGGAGCTCTTGAACTAGGAAAAGAGATACATCATTATGTAATGTCTCAGGGGCTTAATCTTGACGTTTATATTGGTTCTGCATTAGTTGATATGTATGCTAAGTGTGGGAGTTTAGATTTGTCTCTTTTGATTTTCTTCAAATTGACGGATAAAAATTTATATTGCTGGAATGCAGTAATTGAAGGGCTTGCTGTTCATGGTTACGCGGAGAAGGCTTTGAGGATGTTCGCTATCATGGAGAGGGAGAAGATCATGCCCAATGGTGTTACCTTTATTAGTATATTAAATGCTTGCACACATGCTGGGTTAGTTGACGAAGGCAGGAGGAGATTTTTGAGCATGACTCGTGATTACGACATTCTTCCTGAAATCGGACACTATGGTTGCATGGTTGATATGTTAAGTAAATCAGGATATCTCAACGAAGCGTTAGAATTGATTAAAAGTATGGAATTTGAACCAAACTCTATTATTTGGGGAGCCTTGTTGAATGGGTGCAAACTTCATGGGAACTCTGAGATCGCTGAAGATGCTGTTGAACAGTTGATGATTTTGGAACCCATGAATAGTGGGCATTACAATCTTTTGGTTAGCATGTATGCTGAAGAAAAGGATTGGATGGAGGTTGCACATATTCGATCAATGATGAAAGAAAAAGGAGTAGAAAAGAAATATCCTGGCTCAAGTTGGATTGAATTGGAAGGGACAATTCATCAGTTTTCAGCTTCAGCTGATTCTCACCCTGATTCTGACAAAATATACTTCATACTGACAGAATTAGATGGACAACTGAAGCTAGCTGGTTACATACTCGAGCCTTCAGTATGCAGTACTGCTTTGCTTTTTTCAGAGGAAATTTGA 1803 39.49 MFSFVTTNALKQLTKSIGNFVSPPSISMPLQPPSRPSFKQTLLNRIKNCSTINELHGLCASMIKTNAIQDCFLVHQFISASFAFNSVHYPVFAFTQMENPNVFVYNAMIKGFVYCGYPFRALQCYVHMLEGSNVLPTSYTFSSLVKACTFMCAVELGQMVHCHVWKKGFESHLFVQTALVDFYSKLEILSEARKVFDEMCERDAFAWTAMVSALARVGDMDSARKLFEEMPERNTATWNTMIDGYARLGNVESAELLFNQMPTKDIISWTTMITCYSQNKQYQDALAIYSEMRLNGIIPDGVTMSTVVSACAHIGALELGKEIHHYVMSQGLNLDVYIGSALVDMYAKCGSLDLSLLIFFKLTDKNLYCWNAVIEGLAVHGYAEKALRMFAIMEREKIMPNGVTFISILNACTHAGLVDEGRRRFLSMTRDYDILPEIGHYGCMVDMLSKSGYLNEALELIKSMEFEPNSIIWGALLNGCKLHGNSEIAEDAVEQLMILEPMNSGHYNLLVSMYAEEKDWMEVAHIRSMMKEKGVEKKYPGSSWIELEGTIHQFSASADSHPDSDKIYFILTELDGQLKLAGYILEPSVCSTALLFSEEI* 601
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15629917 15631719 - Chy4G077720.1 Chy04g01054 224953

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01054 600 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 101 136 IPR002885 -
Chy04g01054 600 Pfam E motif 483 546 IPR046848 -
Chy04g01054 600 Gene3D Tetratricopeptide repeat domain 157 233 IPR011990 GO:0005515
Chy04g01054 600 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 265 299 IPR002885 -
Chy04g01054 600 Pfam PPR repeat 233 261 IPR002885 -
Chy04g01054 600 Pfam PPR repeat 199 230 IPR002885 -
Chy04g01054 600 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 34 583 - -
Chy04g01054 600 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 203 237 IPR002885 -
Chy04g01054 600 Pfam PPR repeat family 100 148 IPR002885 -
Chy04g01054 600 Pfam PPR repeat family 264 312 IPR002885 -
Chy04g01054 600 Pfam PPR repeat family 365 412 IPR002885 -
Chy04g01054 600 PANTHER HELIX LOOP HELIX PROTEIN, PUTATIVE-RELATED 34 583 - -
Chy04g01054 600 SUPERFAMILY TPR-like 172 290 IPR011990 GO:0005515
Chy04g01054 600 Pfam PPR repeat 441 465 IPR002885 -
Chy04g01054 600 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 366 400 IPR002885 -
Chy04g01054 600 TIGRFAM PPR: pentatricopeptide repeat domain 267 300 IPR002885 -
Chy04g01054 600 TIGRFAM PPR: pentatricopeptide repeat domain 206 234 IPR002885 -
Chy04g01054 600 TIGRFAM PPR: pentatricopeptide repeat domain 368 401 IPR002885 -
Chy04g01054 600 TIGRFAM PPR: pentatricopeptide repeat domain 237 266 IPR002885 -
Chy04g01054 600 Gene3D Tetratricopeptide repeat domain 340 553 IPR011990 GO:0005515
Chy04g01054 600 Gene3D Tetratricopeptide repeat domain 39 156 IPR011990 GO:0005515
Chy04g01054 600 Gene3D Tetratricopeptide repeat domain 234 334 IPR011990 GO:0005515
Chy04g01054 600 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 503 537 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01054 - - - csv:101215244 1188.33
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01054 Chy-Chr4:15629917 Chy08g01077 Chy-Chr8:17920890 1.44E-137 dispersed
Chy04g01054 Chy-Chr4:15629917 Chy06g00187 Chy-Chr6:1223529 9.58E-134 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g338 . . . . . Bpe08g01148 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy04g01054 . . . . . . . . . . . . . . . . . . . . . . . . . Cla05g01571 Cam05g1679 Cec05g1684 Cco05g1728 Clacu05g1670 Cmu05g1561 Cre05g1679 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011559 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 1 1 3 1 1 1 0 1 1 0 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g01054 Chy_Chr04 FPKM 26.325649 26.780413 33.405872 33.169922 30.914343 35.546898 27.876379 22.160429 21.176981 20.603474