Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01070 ATGGAATCCTCTTACTTTTCGTTTTCCGATTCAGATTTCTCGACGGAGTCTTCATTCGGATCAACTGAATCATCGTTCTCATGGACTGATTTTTTCTCAATCCACAGTGCCCTAGAAAACTCAATCGGAATCGATGAATTTCTCGGGAGTCAAAAATCGGAATCGGAATCGAAAATCGTAGTGAAAGAAGAAATCGAAGTTAACTCGATCGATTTTAAGGAGGAGAAACAGAGGAAGACGACGGAGAAGAGTTACAGAGGTGTGAGACGGCGGCCTTGGGGTAAATACGCGGCGGAGATTAGGGATTCAACGAGACATGGAGTTAGGGTTTGGCTTGGAACTTTTGACAGCGCTGAAGCTGCTGCTTTAGCTTATGATCAAGCGGCATTTTCGATGAGAGGAACAATGGCGGTGTTGAATTTTCCGGTGGAAAGGGTGAGGGAATCATTACAGGATATTGAGTATGAATTGGAAGAAGGATGTTCGCCGGTGGTAGCCTTGAAGAGGAAACACTCAATGAGAAGGAAGTCGGTGGCGGCGGCGACAGCGGCGGTGGCGGTGGAGAAGAAGAAGATGAAGAAAAAGAACAATGTGGTGATTTTGGAAGATTTGGGAACAGAGTATTTGGAGGAACTTTTGATGTTAAGTTCAT 652 45.09 MESSYFSFSDSDFSTESSFGSTESSFSWTDFFSIHSALENSIGIDEFLGSQKSESESKIVVKEEIEVNSIDFKEEKQRKTTEKSYRGVRRRPWGKYAAEIRDSTRHGVRVWLGTFDSAEAAALAYDQAAFSMRGTMAVLNFPVERVRESLQDIEYELEEGCSPVVALKRKHSMRRKSVAAATAAVAVEKKKMKKKNNVVILEDLGTEYLEELLMLSSX 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16050519 16051170 + Chy4G077880.1 Chy04g01070 224969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01070 218 CDD AP2 83 143 IPR001471 GO:0003700|GO:0006355
Chy04g01070 218 SUPERFAMILY DNA-binding domain 84 144 IPR016177 GO:0003677
Chy04g01070 218 Gene3D AP2/ERF domain 83 144 IPR036955 GO:0003700|GO:0006355
Chy04g01070 218 PRINTS Ethylene responsive element binding protein signature 108 124 IPR001471 GO:0003700|GO:0006355
Chy04g01070 218 PRINTS Ethylene responsive element binding protein signature 85 96 IPR001471 GO:0003700|GO:0006355
Chy04g01070 218 PANTHER DNA-BINDING DOMAIN 52 215 IPR044808 GO:0003700|GO:0009873
Chy04g01070 218 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 52 215 - -
Chy04g01070 218 ProSiteProfiles AP2/ERF domain profile. 84 142 IPR001471 GO:0003700|GO:0006355
Chy04g01070 218 Pfam AP2 domain 84 134 IPR001471 GO:0003700|GO:0006355
Chy04g01070 218 SMART rav1_2 84 148 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy01g01512 Chy04g01070 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01070 Chy-Chr4:16050519 Chy02g00260 Chy-Chr2:1683362 4.53E-34 dispersed
Chy01g01512 Chy-Chr1:20800829 Chy04g01070 Chy-Chr4:16050519 2.04E-50 transposed
Chy04g01070 Chy-Chr4:16050519 Chy05g00330 Chy-Chr5:3350035 3.80E-53 wgd
Chy04g01070 Chy-Chr4:16050519 Chy06g00479 Chy-Chr6:3204245 1.14E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17856 PF00847 AP2 1.10E-14 CL0081 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01070 K14516 - csv:101220325 321.242