Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01101 ATGTTTGAAGATATCTGGCTGCAGTCGAACAATATGAAGAGTGATGTTAAGATTAAGAGGGGGAGGAGCACTGGAAAAGGGGAGAATATAAGGAAGATAATGAAGTGTTTATGTTCTGGTGAGAAAAAAGCTGGAGATAATATGATTCCAGCATTGAAATCGCCTTCGGCTTTCGAGAATTCAGGAAGTGGACACTCTTCACGGACTGGCGAGATCATCAACAAACCAGAAATTGGGAATATAGAAGAAGCTGAGTCTTCGCTTCGCGAGAGTGGTTGTTTGAATTATGAGGAAGCAAGAGCATTGCTGGGAAGATATGAATATCAAAAAGGAAATATTGAAGCTGCTCTTCATGTATTTGAAGGAATAGATATCACTGCTATAACTAGTAAAATAATGATCTCCATAGCTAGGAGAGGAGATCGTCTACGGAAACGATCACAAAATTTTACTGCCCCGCCAATGTCTATGCATGCTGTCAGTTTACTCTTGGAAGCCATCCTTCTCAAAGCAAAATCATTGGAAGGCCTTGGGAGGTTCGGAGAAGCTGCTCAATCTTGCAAAGTTATTCTGGACATACTTGAATCTTCATTTCCCGAAGGCTTGCCTGAAAACTTTGGTGCTGATTGTAAATTGCAGGAGACAGTTACAAAAGCCGTGGAGTTGCTACCCGAGTTATGGAAGCTAGCTGATGCTTCTCAAGAAGCGATCCTTTCATACCGGCGGGCACTTCTTCATCAGTGGAACCTTGATGCGGGAACCACTGCTCGAATTCAGAAAGAGTTTGCCATTTTTCTTCTGTACAGTGGAATTGAAGCTTGCCCTCCGAATCTCCGGTCTCAAATGGACAGCTCGTTTGTTCCGAAAAACAATATTGAAGAAGCTATACTTTTATTTATGATACTACTTAGAAAAGTTGTTCTTAAAAGAATTGATTGGGATCCATCAATCTTGGATCATCTCTCTTTTGCTTTAATAATATCAGGGGATACAAGGGCTTTAGCAGGTCAAATAGAGGAATTGCCTCCTGGGATTCTACATCGACAAGAACTGCATCATGCTTTAGCTCTTTGTTATTATGGGGCAGGTGAAAACTTGACTGCTTTAAATCTGTTGAGAAAAGTGTTGGGTAGTCATGAGGATCCTAAATCGCTTCCAGCTTTATTGATGGCGTCAAAGATTTGTGGAGAGAACTGTGACCTCGCTGAAGAGGGAACGAGTGTTGCTCATATAGCTCTTCAAAACTTGGATCATGAATGTGATCAATTGGAAGGTGTTGCCAATTGTTTGTTGGGTGTCTCACTGTCTGTATATTCTAAATCTGCCACTGCAGATTCTGAGAAGTTTACTAGACAATCTGAGGCGATAGAAGCCTTGGAAGCTGCACGAAAGAAGACCCGAATGACTGACTCTAACGTTCTTTATCATTTGAGCCTTGAATATGCCAACGAGAGGAAGTTAGATTCAGCACTTCATTATGCAAAAAAGTGTCTCAAGCTAGAAGGTGGATCTAATATTAGAACTTGGTTACTACTGGCTAGGATTCTCTCTGCCCAAAAACGATTTTCAGATGGCGAAAGCATTATAAATGCAGCTCTGGATCAGACAGGGAAATGGGATCAAGCCGAGTTGCTTCAAACAAAAGCAAAGCTTTTAACTGCACAGGATGAGTTTAAAGGTGCTATTGAGACTTATAGTCAATTACTCGCTTTTTTTCAAGTTCAGAGTAAAAGTTTCAATTTGGGAGATAAGAAGCTACTTAAGAGCAGCAGAAATTATGCTGGAAGATTGCAATTGGAAGTGTGGCATGATCTAGCTCTCGTGTACATAAGGCTCTCACAGTGGCACGACGCCGAGGCATGCCTATCAAAGTCAAAGGCCATCTCTTCTTATTCGGCATCTAGATGTCATATCACAGGTATGCTTTATGAAGCAAAAGGCTTGTATAAAGAAGCTCTCAGAGGTTTTATGGCTGCTCTGGAAATTGATCCCATTCATGTCCCTAGCTTGGTCTCGTCGGCCGTGGTTATCAGACATCTGGGCCACCAATCGCATCCCGTGATTCGCAGTTTTTTGATGGATGCTCTAAGGCTGGACCAGACGAACCACAATGCGTGGTACAATCTTGGGCTTTTCTACAAATCAGAAGGAAACAAATCTTCATTAGGAGAAGCGATTGAATGTTTTGAGGCTGCAACTTTCCTTGAAGAGTCTGCTCCTGTTGAGCCATTTAGATAA 2238 41.87 MFEDIWLQSNNMKSDVKIKRGRSTGKGENIRKIMKCLCSGEKKAGDNMIPALKSPSAFENSGSGHSSRTGEIINKPEIGNIEEAESSLRESGCLNYEEARALLGRYEYQKGNIEAALHVFEGIDITAITSKIMISIARRGDRLRKRSQNFTAPPMSMHAVSLLLEAILLKAKSLEGLGRFGEAAQSCKVILDILESSFPEGLPENFGADCKLQETVTKAVELLPELWKLADASQEAILSYRRALLHQWNLDAGTTARIQKEFAIFLLYSGIEACPPNLRSQMDSSFVPKNNIEEAILLFMILLRKVVLKRIDWDPSILDHLSFALIISGDTRALAGQIEELPPGILHRQELHHALALCYYGAGENLTALNLLRKVLGSHEDPKSLPALLMASKICGENCDLAEEGTSVAHIALQNLDHECDQLEGVANCLLGVSLSVYSKSATADSEKFTRQSEAIEALEAARKKTRMTDSNVLYHLSLEYANERKLDSALHYAKKCLKLEGGSNIRTWLLLARILSAQKRFSDGESIINAALDQTGKWDQAELLQTKAKLLTAQDEFKGAIETYSQLLAFFQVQSKSFNLGDKKLLKSSRNYAGRLQLEVWHDLALVYIRLSQWHDAEACLSKSKAISSYSASRCHITGMLYEAKGLYKEALRGFMAALEIDPIHVPSLVSSAVVIRHLGHQSHPVIRSFLMDALRLDQTNHNAWYNLGLFYKSEGNKSSLGEAIECFEAATFLEESAPVEPFR* 746
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17045098 17048540 + Chy4G078190.1 Chy04g01101 225000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01101 745 Gene3D Tetratricopeptide repeat domain 73 416 IPR011990 GO:0005515
Chy04g01101 745 Gene3D Tetratricopeptide repeat domain 585 739 IPR011990 GO:0005515
Chy04g01101 745 SUPERFAMILY TPR-like 452 571 IPR011990 GO:0005515
Chy04g01101 745 SMART tpr_5 471 504 IPR019734 GO:0005515
Chy04g01101 745 SMART tpr_5 703 739 IPR019734 GO:0005515
Chy04g01101 745 SMART tpr_5 599 632 IPR019734 GO:0005515
Chy04g01101 745 SMART tpr_5 164 197 IPR019734 GO:0005515
Chy04g01101 745 SMART tpr_5 349 382 IPR019734 GO:0005515
Chy04g01101 745 SMART tpr_5 633 666 IPR019734 GO:0005515
Chy04g01101 745 SMART tpr_5 542 575 IPR019734 GO:0005515
Chy04g01101 745 SMART tpr_5 506 539 IPR019734 GO:0005515
Chy04g01101 745 SUPERFAMILY TPR-like 540 718 IPR011990 GO:0005515
Chy04g01101 745 PANTHER PROTEIN NPGR2 24 745 - -
Chy04g01101 745 PANTHER PROTEIN NPG1 24 745 IPR043376 -
Chy04g01101 745 ProSiteProfiles TPR repeat profile. 633 666 IPR019734 GO:0005515
Chy04g01101 745 Gene3D Tetratricopeptide repeat domain 443 584 IPR011990 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01596 Chy-Chr3:17943869 Chy04g01101 Chy-Chr4:17045098 0 dispersed
Chy07g00533 Chy-Chr7:4417752 Chy04g01101 Chy-Chr4:17045098 0 transposed
Chy04g01101 Chy-Chr4:17045098 Chy06g00453 Chy-Chr6:3021428 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01101 K21843 - csv:101223229 1414.44