Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01131 ATGGCAGAAATGGCTTGCTCCGCTGCCGACCTCCACCACCTCCTCGGTGGCTCAGCCAATGCCACTGCCGTCGCTGAGTACATTTGCAGCCGATTTGAGTCTGTGTCGACGAAATTCGTGGACACGACGTACGCAGTTGATAACACCTACCTTCTGTTTTCAGCATACCTTGTATTTGCAATGCAGCTTGGATTTGCAATGCTTTGTGCTGGGTCAGTTAGGGCGAAAAACACAATGAATATAATGTTAACAAATGTTCTTGATGCAGCAACTGGTGGAATATTTTATTATGTGTTTGGATTTGCTTTGGCATTTGGAACACCTTCAAATTCCTTTATTGGGCATCATTATTTTGGGCTTTCACAATTCCCATCTTCTTCATTTGATTATGGCTTCTTTTTGTTTCAATGGGCGTTTGCAATTGCTGCTGCTGGGATTACAAGTGGATCCATTGCTGAAAGAACTCAATTTGTTGCTTATTTGATCTATTCTTCTGTTTTGACTGGTTTGGTATATCCGATTGTTTCTCATTGGTTTTGGTCATCCGATGGTTGGGGAAGTGCCGCCCGGTCCGACAAACTCCTTTTCGGCTCCGGCGTAATCGACTTCGCCGGCTCCGGCGTCGTCCACATGGTCGGCGGAATCGCCGGTTTATGGGGCGCCCTCATAGAAGGACCTCGAATCGGCCGGTTCGATCACGCCGGCCGGTCCGTCGCCCTCCGTGGCCACAGCGGCACACTGGTGGTTCTCGGCACTTTCCTCCTCTGGTTCGGCTGGTACGGCTTCAACCCCGGTTCATTCCTCAACATCCTCAAAGCCTACGGCCACACCGCCGCCCCTTATTACGGACAATGGAGCGCCATCGGCCGCACCGCCGTCACCACAACCCTAGCCGGCTGCACAGCCGCACTAACCACTCTCTTCGGCAAACGGCTTCTCGTCGGGCATTGGAATGTGACCGATGTTTGCAACGGTCTATTAGGTGGATTTGCCGCCATAACCTCCGGGTGCGCGGTGGTAGATCCATGGGCAGCGATTGTTTGTGGGTTTTTCGCAGCTTGGGTGTTGATTGGATTCAACAAATTAGCGGAGAAATTGAAGTACGACGATCCATTAGAGGCGGCGCAATTACATGGGGGATGTGGGGCTTGGGGGATTTTGTTCACAGGGTTATTTGCAAAACAAGCTTATGTGAATGAGATATATCCAGGGTTGCCGGAAAGGCCGTACGGGATGCTGATGGGCGGCGGAGGGTGGTTGTTGGCTGCTCATTTGGTGCAAATTTTGTCGATTGTTGGTTGGGTTAGTGTGACAATGGGGATTGTTTTTTGGTTGTTGCACAAGTTTGAGTTGTTGAGGATCAAGGCGGAGGAGGAGATGGCCGGAATGGATTTGACGAGTCACGGTGGTTTGGCTTATGTGTATAACGATGAAGAGAAGTTTTGA 1446 50.41 MAEMACSAADLHHLLGGSANATAVAEYICSRFESVSTKFVDTTYAVDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAATGGIFYYVFGFALAFGTPSNSFIGHHYFGLSQFPSSSFDYGFFLFQWAFAIAAAGITSGSIAERTQFVAYLIYSSVLTGLVYPIVSHWFWSSDGWGSAARSDKLLFGSGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDHAGRSVALRGHSGTLVVLGTFLLWFGWYGFNPGSFLNILKAYGHTAAPYYGQWSAIGRTAVTTTLAGCTAALTTLFGKRLLVGHWNVTDVCNGLLGGFAAITSGCAVVDPWAAIVCGFFAAWVLIGFNKLAEKLKYDDPLEAAQLHGGCGAWGILFTGLFAKQAYVNEIYPGLPERPYGMLMGGGGWLLAAHLVQILSIVGWVSVTMGIVFWLLHKFELLRIKAEEEMAGMDLTSHGGLAYVYNDEEKF* 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17483576 17485826 + Chy4G078490.1 Chy04g01131 225030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01131 481 Gene3D Ammonium transporter AmtB like domains 26 481 IPR029020 -
Chy04g01131 481 ProSitePatterns Ammonium transporters signature. 202 227 IPR018047 GO:0008519|GO:0016020|GO:0072488
Chy04g01131 481 PANTHER AMMONIUM TRANSPORTER 1 480 - -
Chy04g01131 481 SUPERFAMILY Ammonium transporter 44 454 - -
Chy04g01131 481 TIGRFAM amt: ammonium transporter 47 473 IPR001905 GO:0008519|GO:0016020|GO:0072488
Chy04g01131 481 PANTHER AMMONIUM TRANSPORTER 1 480 - -
Chy04g01131 481 Pfam Ammonium Transporter Family 50 473 IPR024041 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01131 Chy-Chr4:17483576 Chy05g00740 Chy-Chr5:10210856 0 dispersed
Chy04g01131 Chy-Chr4:17483576 Chy05g00267 Chy-Chr5:2437527 0 wgd
Chy04g01131 Chy-Chr4:17483576 Chy06g00417 Chy-Chr6:2834934 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01131 K03320 - csv:101223077 937.562