Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01144 ATGGATTTCTGGCCGGAATTTCTCGCCAGCAGTTGGGGCAAAGAGTTCGTCGCCGGTGGAATTGGCGGTGTCGCTGGCATCGTCTCCGGTTACCCACTCGACACTCTTCGTATCCGCCAACAGCACTCCACCTCCGGCTCCGCCATCACCGTCCTCCGTAACATCATGTCCAACGGCGGACCCGCCGCTCTCTACAGAGGAATGGGAGCTCCTCTCGCTTCTGTCACTTTCCAGAACGCCATTGTTTTTCAAACCAACGCCGTACTCTGCAGAGCGTTCGATCCATCGGCGACGGACAACCGTCCACCGTCGTACAAGGCGGTAGCATTAGGCGGATTCGGCACCGGTGCACTACAGAGCTTAATTTTAACACCGGTTGAGCTGGTGAAAATCCGTCTTCAATTACAGGATTTGGGTTCATCAAATAACATAGATCTGAATTCATCTCGACGCGGGCCGATGCAGGTTGCGAAGAACATTTTCAAAACCGAAGGCTACAAAGGTCTATACAGAGGGTTAACAATCACAATGCTAAGAGACGCTCCATCCCATTGTTTTTACTTTTGGACATACGAATTCATGAGAGAAAAGCTTCACCCCGGTTGCCGTAAAACAGGGCAAGAGACATTGAGAACGATGTTAGTTGCCGGAGGACTGGCCGGCGTTGCGAGTTGGGTTTGTTGTTACCCATTAGATGTGGTTAAAACTAGACTTCAAGCTCAATCGAAATTCAAGTTTCAAAAGTACAGTGGGATTGTAGATTGTTTCTATAAGAGTGTGAAAGAAGAAGGGTATAGTGTTTTATGGCGTGGATTAGGAACCGCAGTAGCTAGAGCTTTTGTGGTGAATGGAGCTATTTTTTCAGCTTATGAACTTAGTTTGAGGTGTTTGAACAACAATGGAGGGTTTCATGCTGAAAATACCATTTGA 930 47.96 MDFWPEFLASSWGKEFVAGGIGGVAGIVSGYPLDTLRIRQQHSTSGSAITVLRNIMSNGGPAALYRGMGAPLASVTFQNAIVFQTNAVLCRAFDPSATDNRPPSYKAVALGGFGTGALQSLILTPVELVKIRLQLQDLGSSNNIDLNSSRRGPMQVAKNIFKTEGYKGLYRGLTITMLRDAPSHCFYFWTYEFMREKLHPGCRKTGQETLRTMLVAGGLAGVASWVCCYPLDVVKTRLQAQSKFKFQKYSGIVDCFYKSVKEEGYSVLWRGLGTAVARAFVVNGAIFSAYELSLRCLNNNGGFHAENTI* 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17572895 17573969 - Chy4G078620.1 Chy04g01144 225043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01144 309 ProSiteProfiles Solute carrier (Solcar) repeat profile. 208 296 IPR018108 -
Chy04g01144 309 Gene3D Mitochondrial carrier domain 9 304 IPR023395 -
Chy04g01144 309 ProSiteProfiles Solute carrier (Solcar) repeat profile. 103 197 IPR018108 -
Chy04g01144 309 PRINTS Mitochondrial carrier protein signature 170 188 IPR002067 GO:0055085
Chy04g01144 309 PRINTS Mitochondrial carrier protein signature 15 28 IPR002067 GO:0055085
Chy04g01144 309 PRINTS Mitochondrial carrier protein signature 118 136 IPR002067 GO:0055085
Chy04g01144 309 PRINTS Mitochondrial carrier protein signature 217 239 IPR002067 GO:0055085
Chy04g01144 309 PANTHER CARNITINE/ACYLCARNITINE CARRIER-LIKE PROTEIN 1 298 - -
Chy04g01144 309 Pfam Mitochondrial carrier protein 11 92 IPR018108 -
Chy04g01144 309 Pfam Mitochondrial carrier protein 212 300 IPR018108 -
Chy04g01144 309 Pfam Mitochondrial carrier protein 109 198 IPR018108 -
Chy04g01144 309 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 1 298 - -
Chy04g01144 309 SUPERFAMILY Mitochondrial carrier 11 291 IPR023395 -
Chy04g01144 309 ProSiteProfiles Solute carrier (Solcar) repeat profile. 10 92 IPR018108 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00086 Chy-Chr4:865893 Chy04g01144 Chy-Chr4:17572895 3.16E-18 dispersed
Chy04g01144 Chy-Chr4:17572895 Chy06g02139 Chy-Chr6:25728631 3.44E-52 dispersed
Chy04g02272 Chy-Chr4:27334889 Chy04g01144 Chy-Chr4:17572895 3.15E-14 transposed
Chy01g02068 Chy-Chr1:25492504 Chy04g01144 Chy-Chr4:17572895 9.97E-152 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01144 K15109 - csv:101222749 620.157