Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01183 ATGGAGGAAACTTTTGTTCCTCTTCGTGGAATCAAGAATGACTTGAAAGGGAGATTAGTGTGTTACAAACAAGACTGGACTGGTGGTTTGAGAGCTGGATATAGGATTTTGGCTCCCACCACTTACATATTCTTTGCCTCTGCAATTCCTGTTATTTCATTTGGTGAACAGTTGGAGAGAAGTACTGATGGGGTACTGACTGCAGTTCAAACCTTAGCCTCCACAGCTCTTTGTGGGATCATTCACTCTATTGTTGGAGGTCAACCTTTGCTCATCTTGGGAGTGGCAGAGCCTACTGTTATTATGTATACCTTCATGTTTAATTTTGCGAAAGAACGACCCGAGTTAGGCAGGAATTTGTTTCTAGCATGGAGTGGATGGGTGTGTGTTTGGACTGCAGCCTTGCTGTTCTTAATGGCTATCTTAGGAGCTTGTTCCATCATCAATAGGTTCACACGACTGGCTGGTGAACTGTTTGGTTTGCTTATCGCGATGCTTTTCATGCAGCAAGCGGTCAAAGGACTTGTGGATGAGTTTCGAATCCCTGAACGAGAGAATCCAAAACTGATCGAGTTTATACCGTCTTGGAGGTTTGCCAATGGGATGTTTGCTTTGGTACTATCATTTGGCCTTCTACTCACTGCTTTAAGGAGCCGGAAAGCACGGTCATGGCGATATGGATCCGGTTGGCTCAGAAGCTTGATAGCAGACTATGGAGTACCGCTCATGGTTCTTGTTTGGACAGGTATTTCTTATGTACCTTCAAAAAGTGTCCCACAAGGAATCCCAAGGCGCCTCTTCAGCCCCAATCCATGGTCTCCTGGTGCGTACGAGAATTGGACTGTTCTTAAGGATATGCTTGACGTTCCAGTTATTTACATATGCGGAGCTTTCATCCCGGCTACAATGATTGCAGTGCTTTACTATTTCGACCATAGTGTTGCATCCCAACTTGCTCAGCAGAAAGAGTTTAATTTGAGGAAACCATCTTCTTACCATTATGATTTACTTCTATTGGGATTCTTGACCTTAATATGTGGTCTTCTTGGAATCCCTCCATCCAATGGAGTCATCCCCCAATCTCCCATGCATACAAAGAGCCTGGCTACTCTCAAACATCAGTTGCTGCGGAATAAACTTGTAGAAACAGCACGGAGTAGTATGAGAAAGAATGCCAGCTTAGGACAGTTGTATGGAAGTATGCAACAAGCATATCAACAAATGCAGACCCCCTTGATCTACCAACAGCCTTCAGTTCGTGGACTGAATGAGCTAAAAGAGACAACCATTCAAGCAGCTTCTAGTATGGGCAGTTTCGATGCTCCAGTCGATGAGACAATGTTTGATATTGAAAAGGAAATTGATGATCTATTGCCTGTTGAGGTGAAAGAACAGCGGGTCAGTAATTTGCTTCAAGCGGCAATGGTGGGAGGATGCGTTGCAGCCATGCCAGTCCTGAAGATGATCCCGACCTCGGTTCTATGGGGTTACTTTGCTTTTATGGCCATTGAAAGCTTGCCTGGTAACCAGTTTTGGGAAAGAATCTTGTTGCTCTTTACTGCACCCAGCAGAAGATACAAAGTTCTTGAGGATTACCATGCGACATTCGTCGAAACCGTGCCATTCAAATCCATTGTACTTTTTACCATTTTTCAAACAGTATATTTGTTCATATGCTTTGGACTAACATGGGTTCCGATTGCTGGGGTGATGTTTCCTCTGATGATCATGCTCCTCGTCCCTGTAAGACAATACCTTCTTCCCAAGTTTTTTAAAGGTGCGCATCTCCAAGACCTTGATGCTGCCGAATATGAAGAAGCCCCGGCTTTACCGTTCAATCTTGCGACGGAAGCCGAGCTGGGAGCAGGAGCATCTTTTGGTGGGGATGGAGAGATCTTAGATGAGGTTATCACCCGAAGCCGTGGTGAGTTTAGGCGTATTAGTAGTCCTAAAATCACAAGCTCCACGGCAACACCAATATCTGACAGAAAAAGTATAGACAGCCCTCATCGCTCTTTCAGCCCTCGGTTGAGCGAGCTAAAAGGAGAGCACAGTCCTCGAGCCGGTGGACGAGGGACACCGGGTCAGAGGAGTGCAGAAGCTAAACCATCCAGTCTGGGGAAGAGCCCTCTTAATAACACAGCATCAAAGTAG 2154 45.45 MEETFVPLRGIKNDLKGRLVCYKQDWTGGLRAGYRILAPTTYIFFASAIPVISFGEQLERSTDGVLTAVQTLASTALCGIIHSIVGGQPLLILGVAEPTVIMYTFMFNFAKERPELGRNLFLAWSGWVCVWTAALLFLMAILGACSIINRFTRLAGELFGLLIAMLFMQQAVKGLVDEFRIPERENPKLIEFIPSWRFANGMFALVLSFGLLLTALRSRKARSWRYGSGWLRSLIADYGVPLMVLVWTGISYVPSKSVPQGIPRRLFSPNPWSPGAYENWTVLKDMLDVPVIYICGAFIPATMIAVLYYFDHSVASQLAQQKEFNLRKPSSYHYDLLLLGFLTLICGLLGIPPSNGVIPQSPMHTKSLATLKHQLLRNKLVETARSSMRKNASLGQLYGSMQQAYQQMQTPLIYQQPSVRGLNELKETTIQAASSMGSFDAPVDETMFDIEKEIDDLLPVEVKEQRVSNLLQAAMVGGCVAAMPVLKMIPTSVLWGYFAFMAIESLPGNQFWERILLLFTAPSRRYKVLEDYHATFVETVPFKSIVLFTIFQTVYLFICFGLTWVPIAGVMFPLMIMLLVPVRQYLLPKFFKGAHLQDLDAAEYEEAPALPFNLATEAELGAGASFGGDGEILDEVITRSRGEFRRISSPKITSSTATPISDRKSIDSPHRSFSPRLSELKGEHSPRAGGRGTPGQRSAEAKPSSLGKSPLNNTASK* 718
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18172826 18176429 + Chy4G079010.1 Chy04g01183 225082

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01183 717 PANTHER BORON TRANSPORTER 2-RELATED 1 699 - -
Chy04g01183 717 MobiDBLite consensus disorder prediction 698 717 - -
Chy04g01183 717 Gene3D Helical hairpin bin 18 60 - -
Chy04g01183 717 Pfam HCO3- transporter family 460 550 IPR011531 GO:0006820|GO:0016021
Chy04g01183 717 Pfam HCO3- transporter family 202 373 IPR011531 GO:0006820|GO:0016021
Chy04g01183 717 Pfam HCO3- transporter family 8 180 IPR011531 GO:0006820|GO:0016021
Chy04g01183 717 MobiDBLite consensus disorder prediction 664 686 - -
Chy04g01183 717 PANTHER ANION EXCHANGE PROTEIN 1 699 IPR003020 GO:0005452|GO:0006820|GO:0016020
Chy04g01183 717 MobiDBLite consensus disorder prediction 648 663 - -
Chy04g01183 717 MobiDBLite consensus disorder prediction 648 717 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01183 K24194 BOR; boron transporter - csv:101205388 1410.2
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01183 Chy-Chr4:18172826 Chy12g01265 Chy-Chr12:17230913 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g446 . . . . . . Bma13g00097 . . . Cma01g00269 Cma14g00951 Car01g00241 Car14g00866 . . Cpe03g00817 . . . . . . . . . . . . . . . . Cone18ag0762 . . . Chy04g01183 . . Blo10g00091 . . . Bpe11g00130 . . . Cmo01g00278 Cmo14g00972 . . . . Cpe02g01540 . . . . . . . . Cla10g01116 Cam10g1151 Cec10g1180 Cco10g1160 Clacu10g1172 Cmu10g1945 Cre10g1327 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy02g00274 . 1 372 Antiporters AT5G46110 78.8 7.5e-157 550.4
Chy10g01056 . 56 413 Antiporters AT5G46110 75.7 3.4e-149 525.0
Chy02g01687 . 1 395 Antiporters AT5G54800 72.7 4.9e-158 554.3
Chy06g01802 . 18 393 Antiporters AT5G54800 75.9 6.4e-158 553.9
Chy02g00387 . 19 390 Antiporters AT5G54800 73.5 2.5e-146 515.4
Chy06g00267 . 89 402 Antiporters AT5G54800 53.2 1.7e-86 316.6
Chy09g00348 . 43 400 Antiporters AT3G01550 63.0 1.0e-120 430.3
Chy12g01264 . 53 417 Antiporters AT3G01550 58.7 1.8e-112 402.9
Chy12g01264 . 1 420 Antiporters AT5G33320 72.7 7.4e-157 550.4
Chy09g00348 . 50 403 Antiporters AT5G33320 60.3 8.0e-111 397.5
Chy02g01687 . 22 396 Antiporters AT1G61800 75.0 5.5e-160 560.8
Chy02g00387 . 24 391 Antiporters AT1G61800 77.8 3.6e-159 558.1
Chy06g01802 . 1 394 Antiporters AT1G61800 73.4 3.9e-158 554.7
Chy06g00267 . 106 408 Antiporters AT1G61800 53.1 4.7e-87 318.5
Chy06g00267 . 1 420 Antiporters AT5G17630 69.4 1.5e-152 536.2
Chy02g01687 . 81 394 Antiporters AT5G17630 53.9 3.6e-90 328.9
Chy02g00387 . 92 388 Antiporters AT5G17630 54.3 4.4e-88 322.0
Chy11g00737 . 72 421 Antiporters AT3G13320 75.6 2.1e-141 499.2
Chy04g00713 . 69 406 Antiporters AT3G13320 74.6 3.2e-137 485.3
Chy06g01915 . 24 329 Antiporters AT3G13320 80.7 3.6e-133 471.9
Chy08g00634 CCT,ECH 5 429 Antiporters AT2G38170 72.0 1.5e-164 576.2
Chy04g02251 CCT,ECH 8 422 Antiporters AT2G38170 60.8 2.7e-134 475.7
Chy08g00634 CCT,ECH 1 397 Antiporters AT3G51860 72.5 2.4e-151 532.3
Chy04g02251 CCT,ECH 4 395 Antiporters AT3G51860 62.2 3.4e-129 458.8
Chy11g00737 . 64 416 Antiporters AT3G51860 50.8 3.3e-84 309.3
Chy06g01915 . 24 300 Antiporters AT3G51860 52.0 1.6e-67 253.8
Chy08g00634 CCT,ECH 34 434 Antiporters AT5G01490 61.5 3.6e-136 481.9
Chy04g02251 CCT,ECH 8 429 Antiporters AT5G01490 57.5 1.8e-127 453.0
Chy11g00737 . 72 422 Antiporters AT1G55720 71.8 1.1e-132 470.3
Chy04g00713 . 69 407 Antiporters AT1G55720 69.0 2.8e-125 445.7
Chy06g01915 . 21 329 Antiporters AT1G55720 76.5 8.2e-125 444.1
Chy11g00737 . 54 417 Antiporters AT1G55730 73.8 1.7e-143 506.1
Chy04g00713 . 60 406 Antiporters AT1G55730 73.6 6.4e-138 487.6
Chy06g01915 . 21 329 Antiporters AT1G55730 82.2 1.1e-137 486.9
Chy08g00634 CCT,ECH 65 430 Antiporters AT1G55730 50.8 1.8e-95 346.7
Chy02g01126 . 4 529 Antiporters AT5G27150 76.1 1.0e-230 796.2
Chy11g01468 . 22 527 Antiporters AT5G27150 74.8 3.4e-218 754.6
Chy01g01637 . 69 576 Antiporters AT5G27150 70.1 4.8e-204 707.6
Chy01g01074 . 38 477 Antiporters AT5G27150 57.9 8.9e-134 474.2
Chy11g01468 . 22 536 Antiporters AT3G06370 71.3 1.0e-209 726.5
Chy02g01126 . 5 528 Antiporters AT3G06370 69.8 1.7e-204 709.1
Chy01g01637 . 69 578 Antiporters AT3G06370 66.5 5.8e-189 657.5
Chy01g01074 . 38 477 Antiporters AT3G06370 56.9 4.0e-129 458.8
Chy01g01074 . 24 484 Antiporters AT5G55470 68.4 3.0e-174 608.6
Chy02g01126 . 18 515 Antiporters AT5G55470 60.5 4.0e-171 598.2
Chy11g01468 . 18 514 Antiporters AT5G55470 58.6 7.8e-167 583.9
Chy01g01637 . 60 562 Antiporters AT5G55470 56.6 2.8e-156 548.9
Chy02g01126 . 10 532 Antiporters AT3G05030 77.9 6.9e-235 810.1
Chy11g01468 . 22 527 Antiporters AT3G05030 75.4 6.1e-223 770.4
Chy01g01637 . 69 579 Antiporters AT3G05030 69.3 2.3e-206 715.3
Chy01g01074 . 38 477 Antiporters AT3G05030 56.8 1.0e-132 470.7
Chy04g01164 . 102 666 Antiporters AT1G15460 70.7 2.4e-230 795.0
Chy03g01147 . 99 659 Antiporters AT1G15460 64.9 4.0e-217 751.1
Chy04g01183 . 102 645 Antiporters AT1G15460 59.0 2.1e-181 632.5
Chy12g01265 . 102 644 Antiporters AT1G15460 57.6 1.5e-176 616.3
Chy04g01183 . 3 709 Antiporters AT3G06450 69.7 8.8e-294 1006.1
Chy12g01265 . 3 683 Antiporters AT3G06450 69.1 3.3e-280 961.1
Chy03g01147 . 3 638 Antiporters AT3G06450 55.7 2.0e-213 739.2
Chy04g01164 . 6 647 Antiporters AT3G06450 55.7 2.2e-212 735.7
Chy04g01183 . 1 716 Antiporters AT2G47160 79.1 0.0e+00 1161.0
Chy12g01265 . 1 670 Antiporters AT2G47160 73.9 2.3e-302 1034.6
Chy03g01147 . 4 638 Antiporters AT2G47160 57.5 2.8e-215 745.3
Chy04g01164 . 1 647 Antiporters AT2G47160 56.3 1.5e-213 739.6
Chy04g01164 . 5 663 Antiporters AT1G74810 70.0 8.6e-275 943.0
Chy03g01147 . 4 660 Antiporters AT1G74810 65.9 1.6e-257 885.6
Chy04g01183 . 7 645 Antiporters AT1G74810 59.3 1.1e-218 756.5
Chy12g01265 . 7 644 Antiporters AT1G74810 58.4 2.1e-217 752.3
Chy04g01183 . 1 708 Antiporters AT3G62270 81.5 0.0e+00 1164.1
Chy12g01265 . 1 694 Antiporters AT3G62270 75.3 1.1e-306 1048.9
Chy03g01147 . 4 638 Antiporters AT3G62270 59.3 2.5e-221 765.4
Chy04g01164 . 1 647 Antiporters AT3G62270 57.7 3.8e-217 751.5
Chy03g01147 . 4 657 Antiporters AT4G32510 68.0 1.3e-262 902.5
Chy04g01164 . 1 664 Antiporters AT4G32510 64.6 1.8e-253 872.1
Chy04g01183 . 1 645 Antiporters AT4G32510 55.7 3.6e-209 724.9
Chy12g01265 . 1 650 Antiporters AT4G32510 54.5 8.3e-206 713.8
Chy03g01147 . 4 655 Antiporters AT5G25430 70.4 2.3e-264 908.3
Chy04g01164 . 7 664 Antiporters AT5G25430 65.6 4.1e-245 844.3
Chy04g01183 . 7 645 Antiporters AT5G25430 56.5 6.8e-208 720.7
Chy12g01265 . 7 656 Antiporters AT5G25430 54.7 6.6e-203 704.1
Chy09g00462 . 12 1139 Antiporters AT2G01980 65.2 0.0e+00 1376.7
Chy09g00462 . 20 738 Antiporters AT1G14660 66.1 1.5e-272 935.6
Chy03g01644 . 31 613 Antiporters AT5G11800 76.3 1.7e-234 808.9
Chy02g01210 . 19 588 Antiporters AT5G11800 75.4 6.0e-224 773.9
Chy06g00880 . 51 529 Antiporters AT5G11800 70.6 5.5e-177 617.8
Chy06g00880 . 25 529 Antiporters AT5G51710 82.8 1.4e-227 785.8
Chy03g01644 . 53 594 Antiporters AT5G51710 66.8 3.1e-185 645.2
Chy02g01210 . 5 560 Antiporters AT5G51710 65.3 8.3e-183 637.1
Chy02g01210 . 39 582 Antiporters AT2G19600 80.8 1.2e-229 792.7
Chy03g01644 . 46 608 Antiporters AT2G19600 76.8 7.5e-227 783.5
Chy06g00880 . 29 529 Antiporters AT2G19600 67.7 1.3e-170 596.7
Chy06g01059 . 143 561 Antiporters AT1G49810 77.0 1.7e-180 629.0
Chy06g01059 . 1 577 Antiporters AT3G19490 77.8 4.0e-249 857.4
Chy05g00132 . 103 573 Antiporters AT5G12860 90.7 2.5e-248 854.7
Chy01g00316 . 3 377 Antiporters AT4G28390 80.7 1.7e-171 599.0
Chy03g01554 . 388 774 Antiporters AT4G28390 72.5 3.4e-156 548.1
Chy12g01477 . 1 308 Antiporters AT4G28390 62.2 7.0e-109 391.0
Chy03g01554 . 386 776 Antiporters AT3G08580 77.4 5.1e-168 587.4
Chy01g00316 . 62 376 Antiporters AT3G08580 82.9 5.0e-147 517.7
Chy12g01477 . 8 308 Antiporters AT3G08580 57.7 2.1e-97 352.8
Chy03g01554 . 386 776 Antiporters AT5G13490 81.7 2.2e-179 625.2
Chy01g00316 . 8 376 Antiporters AT5G13490 78.7 1.1e-159 559.7
Chy12g01477 . 9 308 Antiporters AT5G13490 60.5 5.2e-104 374.8
Chy12g01477 . 5 302 Antiporters AT5G17400 78.9 3.5e-135 478.0
Chy01g00316 . 77 363 Antiporters AT5G17400 63.8 1.6e-108 389.4
Chy03g01554 . 475 766 Antiporters AT5G17400 62.7 6.2e-108 387.5
Chy08g01002 . 175 711 Antiporters AT1G08960 66.9 4.4e-189 657.9
Chy04g01624 . 16 568 Antiporters AT5G17850 50.5 5.6e-147 518.1
Chy07g01673 . 1 538 Antiporters AT2G47600 71.2 1.6e-215 745.7
Chy04g01144 . 1 300 Antiporters AT1G79900 69.1 4.2e-117 417.9
Chy01g02068 . 1 302 Antiporters AT1G79900 66.7 1.1e-114 409.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001143 2 3 4 4 2 2 3 2 2 2 2 2 3 2 2 3 2 5 3 2 2 2 2 2 2 2 2 6 3 3 78
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g01183 Chy_Chr04 FPKM 29.37092 31.842049 18.823099 18.014256 25.252132 22.624298 24.726608 23.014147 20.156408 19.630236