Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01191 ATGGAGGCTGGATATGGAGGCGAAGCTTGTCAATTGTATGGTATGGGCACTATGGACTTGAGGGCTGCTGTTGGGAAGCGGAATCTGGAATGGGATTTGAATGATTGGAAATGGGATGGAGATCTCTTTATTGCTAGGCCTTTAAATACGGTTGAATCTGGTCATTTGAGTAGGCAACTTTTCCCAATCGTCTCTGGGATTCCTCTGATGAACGGGGGTTCCTCGAATAGTTCCTCGTCATGCTCGGATGAAGCTAACATGGGGATTGAGAAAGGCAAAAGGGAAGTGGAGAAGAGGAGGAGGGTCACTGTTATAGAAGATGAGAATCTTAATGATGAAGCACGTACTTTGAGTTTGATGGTTGGTGGAAATGGTTCTCAGATTGTTGAGAGAGATGCAGGGAGTTGGGAAGGAACCAGTGGGAAGAAGACTAAATTGGCTGGGGGAAATTCAAATCGTGCAGTTTGCCAGGTAGAGGACTGTGGAGCAGATCTGAGCAATGCGAAAGATTACCACAGACGACATAAAGTCTGCGAAACGCATTCTAAGGCGAGTAATGCACTTGTTGCTAATGTTATGCAGCGATTCTGTCAACAATGTAGCAGGTTCCATGTTCTTCAAGAGTTTGATGAAGGGAAACGAAGTTGTCGCAGGCGTTTGGCTGGCCATAATAAGCGCAGAAGAAAAATTAATCCAGATAATGTTGTTAATGGAAACTCCCCACCTGATGAGCAGACTAGTAGCTATTTACTGTTAACTTTATTGCGAATACTTGCAAATTTACACTCCAATGGATCAAATCAGACCACAGATCAGGATCTTCTTTCTCATCTTATACGAAGTCTTGCCTGCCAATCTAGTGAGCATGTGGGAAAAAACCTATCTGGGATTCTGCATGAACCCCAGAATTTGCTGAACAATGGGGCATTAATTGGTAAATCAGATCTAGTTTCTACTTTTCTCTCAAATGGTCCTCAGATTCCTTTGAGATCTTCTAAACAACATGACACCCCTATACCTGAGACACCAGCACAAGCCATTGGTAGGGGTGGTGATACACCAGCTATATCTTCTATTAAACCAAGCACTTCAAACAGCCCTCCTGCATATTCTGAAATCAGGGACAGTACAGTTGGGCAGTGCAAGATGATGAACTTCGATCTGAACGATGCTTATGTTGACTCAGACGATGGAATGGAAGATATTGAAAGACAAACACTCCCAGTGCACATGGGAACAAGTTCTCTTGAATGTCCTTCTTGGGTGCAACAGGACTCTCATCAGTCAAGTCCTCCTCAAACTAGTGGAAATTCAGATTCAGCATCTGCCCAGTCACCTTCAAGCTCTACTGGAGAAGCCCAGAGCCGAACAGATCGCATCATTTTGAAATTATTTGGGAAAGCACCGAATGATTTTCCTCATGTTTTGCGAGCTCAGGTTCTCGATTGGTTATCGCACAGTCCCACGGAGATAGAGAGCTATATCAGGCCTGGTTGTGTTGTTCTAACAGTATATGTACGGCAGACCGAAGCTGCTTGGGACAATCTTTGCCATGACCTCAGTACCAGTTTTAATAGGCTTCTTGATGTTTCGGATGATGCTTTCTGGAAAACTGGATGGGTTTATGTGCGGGTTCAGCATCAAATAGCTTTTGTTTATCAAGGTCAGGTTGTAGTTGACACCTCCTTGCCTCTTAGAAACAATAATTACTGTAGGATCACAAGTGTAAACCCAGTTGCCGTTTCTACATCTAAGAAGGCTATATTTTCAGTTAAAGGAATAAACTTGAGCCAACCTACAACTAGGTTACTCTGTGCAATTGAAGGGAAATATCTAACTCAGGAAGCTTCAGATGAGTCAACAGAAACTGATGATAACTTGAAGGCACAAGATGACAGCCAATGTGTTACCTTTTCCTGCTCTATTCCTGTTGTCTATGGAAGGGGATTCATTGAGGTTGAAGATGATGGTTTTAGCAGCAGCTCCTTTCCTTTTATAGTTGCAGAGGAGGACGTTTGTTCTGAGATCTGCTCACTTCAGAGTGCATTAGAATTAACTGAAACATGTTCAAATTCCGGGGAAACTGCAGAGCTGGAAGGAAGGAGTAATGCGATGGAATTTATTCATGAAATTGGTTGGCTATTCCATAGAAATCAATTGAAGTCTAGATTAGGCCACTTGGATCCTAATGAAAATCTCTTTTCACTGCCACGGTTCAAGTGGCTCATGGAGTTCTCCATGGACCATGATTGGTGTGCTGTGGTTAAAAAGCTGTTAGATATTCTTCGAGATGGGACCGTGGATGCTGGAGGTCACCCCTCCTTGAATCTCGCATTGATGGAGATGGGTCTACTTCACCGAGCAGTGAGAAAAAACAGTAGATCACTGGTAGAGCTCCTTTTGAGATATCCTTCAAAAGTGAAGGATGCATCAAGTTCTGAAGATAGTGCATCTGTTGATGGAGAGACAGATAGCTTCCTGTTTAAACCCAATGTCGTAGGCCCAGCTGGTTTAACCCCTCTTCACATTGCAGCTGGTAAAGATGATTCCGAGGATGTTCTTGATGCATTAACAAATGACCCGGGAATGGTGGGAATTGAGGCTTGGAAGAGTGCTCGAGATAGCACAGGCTCAACGCCAGAGGATTATGCCCGTTTACGTGGCCATTACTCTTATATTCGCCTTGTCCAGAGGAAAATCAACAAGAGATCTGCAGCTGGTCATGTAGTGCTTGATATTCCTAGTTCTCTCTCAGATGGTAGCTGGAATCAAAAGCAGAACACTGATTTTACCTCCTCCAGGTTTGAGATTGGTAGGATGGAACTAAAACCTAGTCAGCAGCACTGCAAGCTTTGTGTTAGGAAACCGCTGGGTTGCGGAACATCATCTAGCGCGTCTTTGGTCTACAGGCCAGCAATGCTTTCGATGGTGGCCATTGCTGCTGTTTGTGTTTGTGTGGCACTCCTATTTAAAAGCTCGCCTGAGGTTCTCTATGTCTTCCGGCCCTTCCGATGGGAACTATTAGATTACGGTACTAGTTAG 3042 44.05 MEAGYGGEACQLYGMGTMDLRAAVGKRNLEWDLNDWKWDGDLFIARPLNTVESGHLSRQLFPIVSGIPLMNGGSSNSSSSCSDEANMGIEKGKREVEKRRRVTVIEDENLNDEARTLSLMVGGNGSQIVERDAGSWEGTSGKKTKLAGGNSNRAVCQVEDCGADLSNAKDYHRRHKVCETHSKASNALVANVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKINPDNVVNGNSPPDEQTSSYLLLTLLRILANLHSNGSNQTTDQDLLSHLIRSLACQSSEHVGKNLSGILHEPQNLLNNGALIGKSDLVSTFLSNGPQIPLRSSKQHDTPIPETPAQAIGRGGDTPAISSIKPSTSNSPPAYSEIRDSTVGQCKMMNFDLNDAYVDSDDGMEDIERQTLPVHMGTSSLECPSWVQQDSHQSSPPQTSGNSDSASAQSPSSSTGEAQSRTDRIILKLFGKAPNDFPHVLRAQVLDWLSHSPTEIESYIRPGCVVLTVYVRQTEAAWDNLCHDLSTSFNRLLDVSDDAFWKTGWVYVRVQHQIAFVYQGQVVVDTSLPLRNNNYCRITSVNPVAVSTSKKAIFSVKGINLSQPTTRLLCAIEGKYLTQEASDESTETDDNLKAQDDSQCVTFSCSIPVVYGRGFIEVEDDGFSSSSFPFIVAEEDVCSEICSLQSALELTETCSNSGETAELEGRSNAMEFIHEIGWLFHRNQLKSRLGHLDPNENLFSLPRFKWLMEFSMDHDWCAVVKKLLDILRDGTVDAGGHPSLNLALMEMGLLHRAVRKNSRSLVELLLRYPSKVKDASSSEDSASVDGETDSFLFKPNVVGPAGLTPLHIAAGKDDSEDVLDALTNDPGMVGIEAWKSARDSTGSTPEDYARLRGHYSYIRLVQRKINKRSAAGHVVLDIPSSLSDGSWNQKQNTDFTSSRFEIGRMELKPSQQHCKLCVRKPLGCGTSSSASLVYRPAMLSMVAIAAVCVCVALLFKSSPEVLYVFRPFRWELLDYGTS* 1014
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18281127 18296269 - Chy4G079090.1 Chy04g01191 225090

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01191 1013 MobiDBLite consensus disorder prediction 329 373 - -
Chy04g01191 1013 ProSiteProfiles Zinc finger SBP-type profile. 153 230 IPR004333 GO:0003677
Chy04g01191 1013 MobiDBLite consensus disorder prediction 419 454 - -
Chy04g01191 1013 SUPERFAMILY SBT domain 154 235 IPR036893 GO:0003677|GO:0005634
Chy04g01191 1013 MobiDBLite consensus disorder prediction 356 373 - -
Chy04g01191 1013 Pfam SBP domain 156 229 IPR004333 GO:0003677
Chy04g01191 1013 Gene3D - 755 909 IPR036770 -
Chy04g01191 1013 SUPERFAMILY Ankyrin repeat 779 895 IPR036770 -
Chy04g01191 1013 Gene3D - 147 217 IPR036893 GO:0003677|GO:0005634
Chy04g01191 1013 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED 17 1012 - -
Chy04g01191 1013 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 17 1012 IPR044817 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01191 - - - csv:101203103 1957.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01191 Chy-Chr4:18281127 Chy07g00438 Chy-Chr7:3355994 8.27E-37 dispersed
Chy04g01191 Chy-Chr4:18281127 Chy02g02404 Chy-Chr2:27781911 8.16E-32 transposed
Chy04g01191 Chy-Chr4:18281127 Chy12g01481 Chy-Chr12:18717450 4.59E-32 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g464 . . . . Bpe03g00509 . Bma13g00108 . . . Cma01g00262 Cma14g00958 Car01g00236 Car14g00872 . . Cpe03g00825 . . . . . . . . . . . . . . Cone17ag0385 Cone20ag1033 . Cone11ag0721 . . Chy04g01191 . Blo07g00617 Blo10g00099 Bda05g00421 . . Bpe11g00121 . . . Cmo01g00273 Cmo14g00981 . . . . Cpe02g01546 . . . . . . . . Cla10g01123 Cam10g1498 Cec10g1187 Cco10g1169 Clacu10g1180 Cmu10g1953 Cre10g1335 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy04g01191 . 181 1014 SBP-box Gene Family AT2G47070 55.5 4.4e-240 827.8
Chy04g01191 . 25 1014 SBP-box Gene Family AT3G60030 54.4 1.3e-278 956.1
Chy11g01795 . 15 163 SBP-box Gene Family AT5G50570 55.3 3.8e-40 162.5
Chy07g00438 . 1 1032 SBP-box Gene Family AT1G20980 50.3 7.4e-262 900.6
Chy07g00438 . 1 693 SBP-box Gene Family AT1G76580 50.8 7.4e-165 577.8
Chy12g01481 . 121 279 SBP-box Gene Family AT1G69170 54.1 1.7e-41 167.2
Chy04g01191 . 181 1014 SBP-box Gene Family AT2G47070 55.5 4.4e-240 827.8
Chy12g01481 . 121 279 SBP-box Gene Family AT1G69170 54.1 1.7e-41 167.2
Chy04g01191 . 25 1014 SBP-box Gene Family AT3G60030 54.4 1.3e-278 956.1
Chy11g01795 . 15 163 SBP-box Gene Family AT5G50570 55.3 3.8e-40 162.5
Chy11g01795 . 15 163 SBP-box Gene Family AT5G50670 55.3 3.8e-40 162.5
Chy07g00438 . 1 1032 SBP-box Gene Family AT1G20980 50.3 7.4e-262 900.6
Chy07g00438 . 1 693 SBP-box Gene Family AT1G76580 50.8 7.4e-165 577.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003053 3 3 4 4 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 0 1 2 1 2 2 2 52
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17865 PF03110 SBP 7.50E-30 No_clan Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g01191 Chy_Chr04 FPKM 3.345782 3.99206 2.906279 3.301429 1.168937 0.938812 1.574564 5.453104 4.994862 6.197875