Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01191 ATGGAGGCTGGATATGGAGGCGAAGCTTGTCAATTGTATGGTATGGGCACTATGGACTTGAGGGCTGCTGTTGGGAAGCGGAATCTGGAATGGGATTTGAATGATTGGAAATGGGATGGAGATCTCTTTATTGCTAGGCCTTTAAATACGGTTGAATCTGGTCATTTGAGTAGGCAACTTTTCCCAATCGTCTCTGGGATTCCTCTGATGAACGGGGGTTCCTCGAATAGTTCCTCGTCATGCTCGGATGAAGCTAACATGGGGATTGAGAAAGGCAAAAGGGAAGTGGAGAAGAGGAGGAGGGTCACTGTTATAGAAGATGAGAATCTTAATGATGAAGCACGTACTTTGAGTTTGATGGTTGGTGGAAATGGTTCTCAGATTGTTGAGAGAGATGCAGGGAGTTGGGAAGGAACCAGTGGGAAGAAGACTAAATTGGCTGGGGGAAATTCAAATCGTGCAGTTTGCCAGGTAGAGGACTGTGGAGCAGATCTGAGCAATGCGAAAGATTACCACAGACGACATAAAGTCTGCGAAACGCATTCTAAGGCGAGTAATGCACTTGTTGCTAATGTTATGCAGCGATTCTGTCAACAATGTAGCAGGTTCCATGTTCTTCAAGAGTTTGATGAAGGGAAACGAAGTTGTCGCAGGCGTTTGGCTGGCCATAATAAGCGCAGAAGAAAAATTAATCCAGATAATGTTGTTAATGGAAACTCCCCACCTGATGAGCAGACTAGTAGCTATTTACTGTTAACTTTATTGCGAATACTTGCAAATTTACACTCCAATGGATCAAATCAGACCACAGATCAGGATCTTCTTTCTCATCTTATACGAAGTCTTGCCTGCCAATCTAGTGAGCATGTGGGAAAAAACCTATCTGGGATTCTGCATGAACCCCAGAATTTGCTGAACAATGGGGCATTAATTGGTAAATCAGATCTAGTTTCTACTTTTCTCTCAAATGGTCCTCAGATTCCTTTGAGATCTTCTAAACAACATGACACCCCTATACCTGAGACACCAGCACAAGCCATTGGTAGGGGTGGTGATACACCAGCTATATCTTCTATTAAACCAAGCACTTCAAACAGCCCTCCTGCATATTCTGAAATCAGGGACAGTACAGTTGGGCAGTGCAAGATGATGAACTTCGATCTGAACGATGCTTATGTTGACTCAGACGATGGAATGGAAGATATTGAAAGACAAACACTCCCAGTGCACATGGGAACAAGTTCTCTTGAATGTCCTTCTTGGGTGCAACAGGACTCTCATCAGTCAAGTCCTCCTCAAACTAGTGGAAATTCAGATTCAGCATCTGCCCAGTCACCTTCAAGCTCTACTGGAGAAGCCCAGAGCCGAACAGATCGCATCATTTTGAAATTATTTGGGAAAGCACCGAATGATTTTCCTCATGTTTTGCGAGCTCAGGTTCTCGATTGGTTATCGCACAGTCCCACGGAGATAGAGAGCTATATCAGGCCTGGTTGTGTTGTTCTAACAGTATATGTACGGCAGACCGAAGCTGCTTGGGACAATCTTTGCCATGACCTCAGTACCAGTTTTAATAGGCTTCTTGATGTTTCGGATGATGCTTTCTGGAAAACTGGATGGGTTTATGTGCGGGTTCAGCATCAAATAGCTTTTGTTTATCAAGGTCAGGTTGTAGTTGACACCTCCTTGCCTCTTAGAAACAATAATTACTGTAGGATCACAAGTGTAAACCCAGTTGCCGTTTCTACATCTAAGAAGGCTATATTTTCAGTTAAAGGAATAAACTTGAGCCAACCTACAACTAGGTTACTCTGTGCAATTGAAGGGAAATATCTAACTCAGGAAGCTTCAGATGAGTCAACAGAAACTGATGATAACTTGAAGGCACAAGATGACAGCCAATGTGTTACCTTTTCCTGCTCTATTCCTGTTGTCTATGGAAGGGGATTCATTGAGGTTGAAGATGATGGTTTTAGCAGCAGCTCCTTTCCTTTTATAGTTGCAGAGGAGGACGTTTGTTCTGAGATCTGCTCACTTCAGAGTGCATTAGAATTAACTGAAACATGTTCAAATTCCGGGGAAACTGCAGAGCTGGAAGGAAGGAGTAATGCGATGGAATTTATTCATGAAATTGGTTGGCTATTCCATAGAAATCAATTGAAGTCTAGATTAGGCCACTTGGATCCTAATGAAAATCTCTTTTCACTGCCACGGTTCAAGTGGCTCATGGAGTTCTCCATGGACCATGATTGGTGTGCTGTGGTTAAAAAGCTGTTAGATATTCTTCGAGATGGGACCGTGGATGCTGGAGGTCACCCCTCCTTGAATCTCGCATTGATGGAGATGGGTCTACTTCACCGAGCAGTGAGAAAAAACAGTAGATCACTGGTAGAGCTCCTTTTGAGATATCCTTCAAAAGTGAAGGATGCATCAAGTTCTGAAGATAGTGCATCTGTTGATGGAGAGACAGATAGCTTCCTGTTTAAACCCAATGTCGTAGGCCCAGCTGGTTTAACCCCTCTTCACATTGCAGCTGGTAAAGATGATTCCGAGGATGTTCTTGATGCATTAACAAATGACCCGGGAATGGTGGGAATTGAGGCTTGGAAGAGTGCTCGAGATAGCACAGGCTCAACGCCAGAGGATTATGCCCGTTTACGTGGCCATTACTCTTATATTCGCCTTGTCCAGAGGAAAATCAACAAGAGATCTGCAGCTGGTCATGTAGTGCTTGATATTCCTAGTTCTCTCTCAGATGGTAGCTGGAATCAAAAGCAGAACACTGATTTTACCTCCTCCAGGTTTGAGATTGGTAGGATGGAACTAAAACCTAGTCAGCAGCACTGCAAGCTTTGTGTTAGGAAACCGCTGGGTTGCGGAACATCATCTAGCGCGTCTTTGGTCTACAGGCCAGCAATGCTTTCGATGGTGGCCATTGCTGCTGTTTGTGTTTGTGTGGCACTCCTATTTAAAAGCTCGCCTGAGGTTCTCTATGTCTTCCGGCCCTTCCGATGGGAACTATTAGATTACGGTACTAGTTAG 3042 44.05 MEAGYGGEACQLYGMGTMDLRAAVGKRNLEWDLNDWKWDGDLFIARPLNTVESGHLSRQLFPIVSGIPLMNGGSSNSSSSCSDEANMGIEKGKREVEKRRRVTVIEDENLNDEARTLSLMVGGNGSQIVERDAGSWEGTSGKKTKLAGGNSNRAVCQVEDCGADLSNAKDYHRRHKVCETHSKASNALVANVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKINPDNVVNGNSPPDEQTSSYLLLTLLRILANLHSNGSNQTTDQDLLSHLIRSLACQSSEHVGKNLSGILHEPQNLLNNGALIGKSDLVSTFLSNGPQIPLRSSKQHDTPIPETPAQAIGRGGDTPAISSIKPSTSNSPPAYSEIRDSTVGQCKMMNFDLNDAYVDSDDGMEDIERQTLPVHMGTSSLECPSWVQQDSHQSSPPQTSGNSDSASAQSPSSSTGEAQSRTDRIILKLFGKAPNDFPHVLRAQVLDWLSHSPTEIESYIRPGCVVLTVYVRQTEAAWDNLCHDLSTSFNRLLDVSDDAFWKTGWVYVRVQHQIAFVYQGQVVVDTSLPLRNNNYCRITSVNPVAVSTSKKAIFSVKGINLSQPTTRLLCAIEGKYLTQEASDESTETDDNLKAQDDSQCVTFSCSIPVVYGRGFIEVEDDGFSSSSFPFIVAEEDVCSEICSLQSALELTETCSNSGETAELEGRSNAMEFIHEIGWLFHRNQLKSRLGHLDPNENLFSLPRFKWLMEFSMDHDWCAVVKKLLDILRDGTVDAGGHPSLNLALMEMGLLHRAVRKNSRSLVELLLRYPSKVKDASSSEDSASVDGETDSFLFKPNVVGPAGLTPLHIAAGKDDSEDVLDALTNDPGMVGIEAWKSARDSTGSTPEDYARLRGHYSYIRLVQRKINKRSAAGHVVLDIPSSLSDGSWNQKQNTDFTSSRFEIGRMELKPSQQHCKLCVRKPLGCGTSSSASLVYRPAMLSMVAIAAVCVCVALLFKSSPEVLYVFRPFRWELLDYGTS* 1014
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18281127 18296269 - Chy4G079090.1 Chy04g01191 225090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01191 1013 MobiDBLite consensus disorder prediction 329 373 - -
Chy04g01191 1013 ProSiteProfiles Zinc finger SBP-type profile. 153 230 IPR004333 GO:0003677
Chy04g01191 1013 MobiDBLite consensus disorder prediction 419 454 - -
Chy04g01191 1013 SUPERFAMILY SBT domain 154 235 IPR036893 GO:0003677|GO:0005634
Chy04g01191 1013 MobiDBLite consensus disorder prediction 356 373 - -
Chy04g01191 1013 Pfam SBP domain 156 229 IPR004333 GO:0003677
Chy04g01191 1013 Gene3D - 755 909 IPR036770 -
Chy04g01191 1013 SUPERFAMILY Ankyrin repeat 779 895 IPR036770 -
Chy04g01191 1013 Gene3D - 147 217 IPR036893 GO:0003677|GO:0005634
Chy04g01191 1013 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED 17 1012 - -
Chy04g01191 1013 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 17 1012 IPR044817 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01191 Chy-Chr4:18281127 Chy07g00438 Chy-Chr7:3355994 8.27E-37 dispersed
Chy04g01191 Chy-Chr4:18281127 Chy02g02404 Chy-Chr2:27781911 8.16E-32 transposed
Chy04g01191 Chy-Chr4:18281127 Chy12g01481 Chy-Chr12:18717450 4.59E-32 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17865 PF03110 SBP 7.50E-30 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01191 - - csv:101203103 1957.18