Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01200 ATGGCTGCTGCAGCTACAACGAGCGTTGTGCCACCGAATCGGCGTCGGACGATTAGCGCGCCGGAAGACAAATTGGAATTCGAGACGACGGAGGGGGTTGAGCCGATCTTGACTTTCGATCAGATGGGCATTAAAGATGATCTTCTTCGTGGAATATATGCCTACGGTTTTGAAAAGCCATCGGCCATTCAGCAGAGAGCTGTGAGGCCGATTATTGAGGGTCGAGATGTTATTGCGCAGGCTCAATCTGGGACTGGGAAGACTTCCATGATTGCCCTTACCGTTTGCCAGATGGTTGATACCACAAGTAGAGAGGTGCAGGCCTTGATCTTGTCCCCTACGAGAGAATTGGCGACTCAGACAGAGAAGGTTATATTGGCCATTGGCGACTACATTAATATACAAGCACACGCATGTATTGGAGGCAAAAGTGTGGGTGAAGATATCAGAAAGCTTGAGTTTGGAGTTCAGGTTGTGTCAGGAACTCCTGGAAGAGTCTGTGACATGATCAAGAGAAGGACATTGCGTACCAGAGCCATTAAGTTATTAGTTTTGGACGAGTCTGATGAAATGCTGAGCAGGGGGTTTAAAGACCAAATTTATGATGTATATCGGTATCTTCCACCAGAACTTCAGGTTGTCTTGATTTCTGCTACCCTTCCTCATGAAATCCTGGAGATGACAAACAAGTTTATGACAGATCCTGTGAGGATTCTTGTCAAGCGTGATGAGTTAACTTTGGAGGGTATTAAGCAATTCTTCGTTGCGGTTGAAAGGGAAGAGTGGAAGTTTGATACCTTATGTGATCTTTATGATACCTTGACTATCACTCAAGCTGTCATTTTCTGTAACACTAAGCGGAAGGTTGAATGGTTGACTGAAAAGATGCGAAGTAATAACTTCACAGTTTCACATATGCATGGGGACATGCCTCAAAAGGAAAGAGATGCAATCATGGGGGAGTTCCGATCAGGAACTACCCGTGTTCTAATTACTACTGATGTTTGGGCACGAGGGCTTGATGTGCAGCAGGCAAGTTTCTGGTTCTTTGATTTTATTGATCTTTGTTGA 1071 45.0 MAAAATTSVVPPNRRRTISAPEDKLEFETTEGVEPILTFDQMGIKDDLLRGIYAYGFEKPSAIQQRAVRPIIEGRDVIAQAQSGTGKTSMIALTVCQMVDTTSREVQALILSPTRELATQTEKVILAIGDYINIQAHACIGGKSVGEDIRKLEFGVQVVSGTPGRVCDMIKRRTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPHEILEMTNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVEWLTEKMRSNNFTVSHMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQASFWFFDFIDLC* 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18434086 18436975 - Chy4G079180.1 Chy04g01200 225099
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01200 356 Pfam DEAD/DEAH box helicase 62 224 IPR011545 GO:0003676|GO:0005524
Chy04g01200 356 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 37 65 IPR014014 GO:0003724
Chy04g01200 356 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 249 356 IPR001650 -
Chy04g01200 356 SMART ultradead3 56 253 IPR014001 -
Chy04g01200 356 Gene3D - 27 245 IPR027417 -
Chy04g01200 356 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 244 346 IPR027417 -
Chy04g01200 356 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 29 241 IPR027417 -
Chy04g01200 356 CDD DEADc_EIF4AIII_DDX48 39 239 - -
Chy04g01200 356 PANTHER BNAC03G41130D PROTEIN 22 347 - -
Chy04g01200 356 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 22 347 - -
Chy04g01200 356 Gene3D - 246 352 IPR027417 -
Chy04g01200 356 SMART helicmild6 290 354 IPR001650 -
Chy04g01200 356 Pfam Helicase conserved C-terminal domain 263 346 IPR001650 -
Chy04g01200 356 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 68 238 IPR014001 -
Chy04g01200 356 CDD SF2_C_DEAD 250 344 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01200 Chy-Chr4:18434086 Chy06g00183 Chy-Chr6:1190164 8.00E-67 dispersed
Chy04g01200 Chy-Chr4:18434086 Chy01g02191 Chy-Chr1:26465737 1.11E-143 transposed
Chy04g01200 Chy-Chr4:18434086 Chy04g00666 Chy-Chr4:7687592 1.25E-143 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01200 K13025 - csv:101222664 679.863