Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01233 ATGGGTCGAGGGAAGATTGAAATCAAAAGGATTGAGAATGCTAATAGCAGACAAGTTACATTCTCGAAGAGACGAGCTGGGTTGCTTAAGAAGGCTCAAGAACTTGCTATTCTTTGTGATGCTGAAGTTGCTGTTATTATCTTCTCTAATACTGGCAAGCTTTTCGAGTTTTCTAGTTCTGGCATGAAGCACACTCTTGCAAGATACAACAAATGTGTAGAATCTTCAGATGCTACAGTAGACGTGCACAAGGTTGAGCAGCGAGAGCATGAGGAGGTAGACATTCTACGAGAGGAAATAACAACTCTGCAAATGAAACAATTACAGCTATTGGGAAAGGATCTCACTGGCTTAGGCTTCAAAGAGTTGCAAAACCTGGAGCAACAGCTAAATGAAGGGCTATTACTGGTGAAAGAGAAGAAGGAACAGTTACTGATGGAGCAACTAGAGCAATCAAGGGTACAGGAACAACGAGCAATGCTTGAGAACGAAACTCTGCGGAGACAGGTCAATGAGCTTCGGTGTCTGTTTCCGCCGGTTGATTGTCCCCTTCCAGCTTATCTTGAATACTGCTCCCTAGAGCAAAAGAACATTGGCATTAGAAGCCCTGATATGGCCTGCAACTCTGAAATTGAAAGAGGAGATTCAGACACCACCTTGCACTTGGGGCTGCCATCTCATGTTTATTGCAAGAGAAAGGAGAGTGAGAAAGATACTCATTCAAATGATTCAGGGGCTCAAATGGGCATATTATGA 756 43.39 MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMKHTLARYNKCVESSDATVDVHKVEQREHEEVDILREEITTLQMKQLQLLGKDLTGLGFKELQNLEQQLNEGLLLVKEKKEQLLMEQLEQSRVQEQRAMLENETLRRQVNELRCLFPPVDCPLPAYLEYCSLEQKNIGIRSPDMACNSEIERGDSDTTLHLGLPSHVYCKRKESEKDTHSNDSGAQMGIL* 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18872839 18876647 + Chy4G079510.1 Chy04g01233 225132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01233 251 Coils Coil 149 176 - -
Chy04g01233 251 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Chy04g01233 251 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Chy04g01233 251 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Chy04g01233 251 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Chy04g01233 251 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL15 1 229 - -
Chy04g01233 251 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Chy04g01233 251 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Chy04g01233 251 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Chy04g01233 251 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Chy04g01233 251 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
Chy04g01233 251 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Chy04g01233 251 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Chy04g01233 251 Coils Coil 123 143 - -
Chy04g01233 251 MobiDBLite consensus disorder prediction 232 251 - -
Chy04g01233 251 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Chy04g01233 251 PANTHER MADS BOX PROTEIN 1 229 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01233 Chy-Chr4:18872839 Chy08g00183 Chy-Chr8:4250489 6.28E-53 dispersed
Chy04g01233 Chy-Chr4:18872839 Chy02g00197 Chy-Chr2:1342093 5.77E-40 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17866 PF01486 K-box 5.50E-17 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01233 - - csv:101218805 455.292