Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01311 ATGGCTGCTGCAGGGTCTGGTTCTGAGCAGCCACAGTTCCTTGTGAGGGCTGGGGATGAGAATTTTTCACATGCTCCGTTGATCGACAACCCGGAAAATGATCAGATTATTGTTCCTGATAAGAAAAGCTGGAAGAACCTTTTTGCATACATGGGCCCGGGATTTCTTGTTTCTATTGCATATATTGATCCTGGGAATTTTGAGACTGATCTACAATCTGGTGCCAAGTACAAGTATGGGTTGCTTTGGGTCATATTAGTGGCTTCCTTTGCTGCCCTCATCATTCAGTCTTTAGCAGCCAATCTAGGGGTTGTCACGGGAAAACATTTAGCAGAGCACTGTAAAGCTGAGTACCCCAAGGTGCAAAATTTCATCCTCTGGGTCCTAGCTGAAATTGCGATTGTTGCGTGTGATATTCCTGAAGTTATAGGAACTGCTTTTGCATTGAATATGCTCTTCAGCATTCCTGTTTGGTGTGGCGTTCTTCTGACAGGGCTTAGTACACTATTACTTCTTGCACTGCAGCAATATGGGATTAGAAAGCTTGAATTCTTGATTGCCTTTCTTGTGTTGACAATTGCGGTTTGCTTCTTCCTGGAGCTGGGCTATGCAAAGCCGGACGCTGGAGAAATTTTTTATGGGCTTTTTGTCCCTCAATTGAAAGGAAGTGGTGCTACTGGTCTTGCAATTTCACTTCTTGGTGCTATGGTTATGCCACACAATCTCTTTCTTCATTCAGCACTGGTGCTCTCTAGGAAAATACCCCGTTCCCTTTCTGGCATCAAGGAAGCTTGCAGATTTTATATGATCGAGAGTGGCTTTGCTCTTATGGTGGCCTTCCTCATTAATGTGTCAGTCATTTCAGTTAGTGGTGCAGTTTGCAGTTCCCCAGATTTAAATAAGGAGGACCAAATGAGCTGCAATGACTTGGACTTGAATAAAGCTTCATTTTTATTGAGAAATGTATTGGGTAAATGGAGTTCAAAAATTTTTGCTATTGCTTTGTTGGCATCGGGGCAGAGTTCTACCATAACAGGAACCTACGCAGGACAGTATGTTATGCAGGGGTTTCTCGATTTGAAACTGACGCCATGGATCAGAAACATTTTAACTCGAAGCTTAGCAATTATTCCTAGTTTGATTGTTGCACTCATTGGTGGGTCTTCTGGGGCTGGGAAGCTGATCATTATTGCGTCGATGATTTTGTCATTTGAACTCCCTTTTGCTCTAGTCCCCCTTCTAAAGTTTACAAGCAGTAAGGCCAAGATGGGACCGCATGTCAACTCTACTGCGATTACAGTGTTGACATGGATTATTGGATTACTCATCATGGCTATCAATATATACTACCTCATGGGCCGTTTTATCCATGTGCTCCTTCATAACGATCTCCATCTTGCAGCAGTCGTCCTGATAGGGATACTTGGATTTTCAGCCGTGGCACTATATTTAGCTGGAATTGCTTATCTAGTTTTGAAAAAGACCAAGGAGATAAGTCATCTCTTAGCAGTAACAACAGTAGAAAGTCGAAGACTGAGCAACGAGCCGAGCAAGACATCGGGATAG 1566 43.23 MAAAGSGSEQPQFLVRAGDENFSHAPLIDNPENDQIIVPDKKSWKNLFAYMGPGFLVSIAYIDPGNFETDLQSGAKYKYGLLWVILVASFAALIIQSLAANLGVVTGKHLAEHCKAEYPKVQNFILWVLAEIAIVACDIPEVIGTAFALNMLFSIPVWCGVLLTGLSTLLLLALQQYGIRKLEFLIAFLVLTIAVCFFLELGYAKPDAGEIFYGLFVPQLKGSGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSLSGIKEACRFYMIESGFALMVAFLINVSVISVSGAVCSSPDLNKEDQMSCNDLDLNKASFLLRNVLGKWSSKIFAIALLASGQSSTITGTYAGQYVMQGFLDLKLTPWIRNILTRSLAIIPSLIVALIGGSSGAGKLIIIASMILSFELPFALVPLLKFTSSKAKMGPHVNSTAITVLTWIIGLLIMAINIYYLMGRFIHVLLHNDLHLAAVVLIGILGFSAVALYLAGIAYLVLKKTKEISHLLAVTTVESRRLSNEPSKTSG* 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19609454 19614299 - Chy4G080290.1 Chy04g01311 225210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01311 521 PRINTS Natural resistance-associated macrophage protein signature 154 173 IPR001046 GO:0016020|GO:0030001|GO:0046873
Chy04g01311 521 PRINTS Natural resistance-associated macrophage protein signature 179 200 IPR001046 GO:0016020|GO:0030001|GO:0046873
Chy04g01311 521 PRINTS Natural resistance-associated macrophage protein signature 339 358 IPR001046 GO:0016020|GO:0030001|GO:0046873
Chy04g01311 521 PRINTS Natural resistance-associated macrophage protein signature 399 418 IPR001046 GO:0016020|GO:0030001|GO:0046873
Chy04g01311 521 PRINTS Natural resistance-associated macrophage protein signature 126 152 IPR001046 GO:0016020|GO:0030001|GO:0046873
Chy04g01311 521 PRINTS Natural resistance-associated macrophage protein signature 229 252 IPR001046 GO:0016020|GO:0030001|GO:0046873
Chy04g01311 521 PRINTS Natural resistance-associated macrophage protein signature 367 384 IPR001046 GO:0016020|GO:0030001|GO:0046873
Chy04g01311 521 Pfam Natural resistance-associated macrophage protein 67 429 IPR001046 GO:0016020|GO:0030001|GO:0046873
Chy04g01311 521 Hamap Divalent metal cation transporter MntH [mntH]. 39 455 IPR001046 GO:0016020|GO:0030001|GO:0046873
Chy04g01311 521 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 46 423 IPR001046 GO:0016020|GO:0030001|GO:0046873
Chy04g01311 521 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 8 507 IPR001046 GO:0016020|GO:0030001|GO:0046873
Chy04g01311 521 PANTHER METAL TRANSPORTER NRAMP1 8 507 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00765 Chy-Chr3:10331082 Chy04g01311 Chy-Chr4:19609454 0 dispersed
Chy04g01311 Chy-Chr4:19609454 Chy04g01343 Chy-Chr4:20045726 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01311 K21398 - csv:101211618 976.852