Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01325 ATGGGGATTGAAACAGTTGAGAATGACGTCATTTTCCGGTCTAAACTACCGGACATCTACATCCCGAAACATCTTCCTCTGCATTCCTACTGCCTACAAGAAAACGCCGCCAAAATAGGCCACCGGACTTGCCTGATCAACGGCATCACCGGGGAATCCTTCACCTACAACGACGTCGATCTTACCGCACGCAAGGTGGCCTCCGGATTAAACAAACTCGGCATTACAAAACGCGACGTAATCATGCTCCTCCTCCCAAATTCACCGGAATTCGTCTTTGCTTTCATCGGGGCCTCCTACCTCGGTGCAATCATGACGGCCGCAAACCCTTTCTTCACGGCAGCAGAAATCGGAAAGCAAGCAAAAGGATCAAAATCAAAACTAATCATAACGCAATCATCGTACTACGAAAAAGTAAAGGAAATAACAGAGGAATTGCCAGAGGTTAAAATAATGACCGTCGATTCTCCTCCCGACGGTTGTTTATGGTTCGGTGATCTAATTAAAGCCGACGAAAGAGAGGTTCCGAGGGTGGATATCGACCCAGACGACGTGGTTGCGCTGCCGTATTCGTCGGGAACGACGGGATTGCCGAAGGGAGTGATGCTTACACATAAAAGTTTGGTTACGAGTGTGGCTCAGCAAGTGGATGGGGAAAATCCAAATCTGTATTATGGACATGAGGATGTGATTCTGTGTGTTTTGCCGTTGTTTCATATTTATTCTTTGAATTCGGTTTTGCTGTGTGGATTAAGAGCTGGAAGTACCATTTTGATCATGCCCAAATTTGAGATCGGTTTGCTTTTGCAATTGGCGGAGAAATATGGAGTTACCGTTGCGCCCATCGTGCCGCCCATCGTTCTGGCTATTGCAAAGTCGCCGGAGCTTGAGAAGTATGACCTTTCGTCAATCAAAATTATTAAATCCGGCGGTGCTCCGCTTGGGAAGGAGCTTGAAGATACCGTGAGAGCCAAGTTTCCTAAGGCTGTGCTCGGACAGGGGTACGGAATGACGGAGGCGGGTCCAGTCCTAACAATGGGATTAGCATTTGCAAAGGACCCATTTCCAATGAAACCAGGCGCCTGCGGCACCGTCGTCAGAAACGCGGAGATGAAGATCGTCGACACCGAAACCGGCAGTTCCTTGCCTCGTAACACGCCGGGAGAGATCTGCATCAGAGGTGATCAAATCATGAAAGGCTATCTCAACAATCCAGAGGCAACGGCGGCCACTATCGACAAGGATGGGTGGTTGCACACCGGGGATATTGGATTCATCGACGACGATGATGAGATGTTCATTGTGGATCGGTTGAAGGAACTGATTAAGTACAAGGGATTTCAAGTGGCTCCGGCGGAACTGGAAGCTCTGTTGTTGACTCATCCGGTCATCTCTGATGCCGCCGTTGTTCCAATGAAAGATGAACAAGCTGGAGAAGTTCCCGTCGCGTTCGTTGTGAAATTGAAGAATTCTGAAGCCACTGAAGATGAAATTAAACAGTTTATTTCAAAACAGGTGGTTTTCTACAAAAGAATAAACCGGGTGTTTTTCATAGATGCAATTCCCAAATCGCCCTCGGGAAAGATATTGAGGAAGGAGTTGAGGGCAAAGTTAGCTGCTGCTTTTCCAAATTCTAATTAA 1641 47.53 MGIETVENDVIFRSKLPDIYIPKHLPLHSYCLQENAAKIGHRTCLINGITGESFTYNDVDLTARKVASGLNKLGITKRDVIMLLLPNSPEFVFAFIGASYLGAIMTAANPFFTAAEIGKQAKGSKSKLIITQSSYYEKVKEITEELPEVKIMTVDSPPDGCLWFGDLIKADEREVPRVDIDPDDVVALPYSSGTTGLPKGVMLTHKSLVTSVAQQVDGENPNLYYGHEDVILCVLPLFHIYSLNSVLLCGLRAGSTILIMPKFEIGLLLQLAEKYGVTVAPIVPPIVLAIAKSPELEKYDLSSIKIIKSGGAPLGKELEDTVRAKFPKAVLGQGYGMTEAGPVLTMGLAFAKDPFPMKPGACGTVVRNAEMKIVDTETGSSLPRNTPGEICIRGDQIMKGYLNNPEATAATIDKDGWLHTGDIGFIDDDDEMFIVDRLKELIKYKGFQVAPAELEALLLTHPVISDAAVVPMKDEQAGEVPVAFVVKLKNSEATEDEIKQFISKQVVFYKRINRVFFIDAIPKSPSGKILRKELRAKLAAAFPNSN* 547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19794468 19797638 - Chy4G080430.1 Chy04g01325 225224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01325 546 CDD 4CL 21 534 - -
Chy04g01325 546 Gene3D - 439 541 IPR045851 -
Chy04g01325 546 PANTHER 4-COUMARATE--COA LIGASE 2-LIKE 7 540 - -
Chy04g01325 546 Pfam AMP-binding enzyme 32 444 IPR000873 -
Chy04g01325 546 Pfam AMP-binding enzyme C-terminal domain 453 528 IPR025110 -
Chy04g01325 546 ProSitePatterns Putative AMP-binding domain signature. 188 199 IPR020845 -
Chy04g01325 546 Gene3D - 5 438 IPR042099 -
Chy04g01325 546 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 7 540 - -
Chy04g01325 546 SUPERFAMILY Acetyl-CoA synthetase-like 20 540 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01919 Chy-Chr1:24431937 Chy04g01325 Chy-Chr4:19794468 0 dispersed
Chy01g01920 Chy-Chr1:24441070 Chy04g01325 Chy-Chr4:19794468 0 dispersed
Chy02g02216 Chy-Chr2:26272015 Chy04g01325 Chy-Chr4:19794468 0 dispersed
Chy04g01325 Chy-Chr4:19794468 Chy05g00951 Chy-Chr5:14103681 0 dispersed
Chy12g00816 Chy-Chr12:13246391 Chy04g01325 Chy-Chr4:19794468 9.81E-137 transposed
Chy01g01918 Chy-Chr1:24424172 Chy04g01325 Chy-Chr4:19794468 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01325 K01904 - csv:101215427 1052.35