Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01331 ATGGAGAAGAAGACTTATCCCATAGGTGAAGATTCTTATATTCTATATGAAGAGGTTGGGCAGGGTGTGAGCGCTTCAGTTCACCGTGCTCTTTGTAAACCTCTCAATGAAATCGTCGCCATCAAGATTCTCGATTTTGAGCGTGAGAATTGTGATCTGGCTAGCATTTATCGTGAAGTACAGACAATGATCTTGGTTGACCATCCGAATGTCCTTAAATCACACTGCTCCTTTGTCAATGGCCATGATTTGTGGATTGTTATGCCCTACATGTCTGGAGGTTCATGTCTTCACATATTGAAGGCTGCATATCCTGATGGTTTCGAGGAGGTCGTGATAGCAACAGTATTGCGAGAAGTATTAAAGGGAGTTGAATATCTTCATAATCATGGACATATTCATCGGGATATAAAAGCAGGGAATGTTCTTATTGATTCACGTGGTGGAATCAAGCTAGGAGACTTTGGTGTTTCTGCTTGCCTTTTTGATTCAGGTGATCGACAACGTGTGAGGAATACATTCGTGGGGACACCTTGCTGGATGGCACCTGAGGTTATGGAGCAATTAAATGGTTATGACTTCAAGGCTGACATCTGGTCTTTTGCCATAACTGGGTTAGAGCTTGCCCATGGCCATGCCCCTTTCTCAAAATATCCTCCGATGAAGGTACTGATGATGACCTTGCAAAATGCACCTCCAGGGCTTGATTATGAGAGAGATAAAAAATTTTCAAAGTCTTTCAAGCAGATGATTGCTAGTTGCTTGGTAAAAGATCCTTCAAAACGACCTTCTGCAAGTAAGCTGCTAAAGCATTCTTTTTTTAAGCAAGCCCGGTCAAATGATTACATTGCACGCACCCTTTTGGAAGGGCTACCTGTTCTTGGTGATCGTATAAAGGCACTTAAGAGAAAGGAAGAAGATATGCTAGCACAAAAGAAAATTTCAGATGGAAAAAAGGAAGAATTATCACAGAATGAATATAAACGAGGCATCAGTGGATGGAACTTCAATCTTGATGATTTAAAGGCTCAGGCATCTCTGATTCAGGAATTTGAAGAGTCAATTAGTGAAATGAGTGAAGTAGGGAGCTCAAATTCATTGAATGCACTTGATGTGCAAGAAAAGAAATTACAAGGCCAAAATTCTTCAGAAATTTCAGATGTTGAAGAGAATGCCATGCTCCGGAGACAACCCTCCATGAAAGCAAATGACACAGTAAATGGTAAAAAATCTATCAATGAATCAACAATTATTGGTTCTTGCTCCCAACATCAGTCTTCACCCCGCCATGATAATCAAACTGAGAATGGCTCCAATGAAGAGGTTAATTTGGAGAGCAGCAGAAGAATTTTGGGGAATACTCCTAATACTATCCAACATAAAAGAAGTATTTCTTCTAATACCTCTATTCAACAAGAAGTCAGTTTGCCTCTGAACAGAAGAGAGAGTTACGAGATGGAAAAGAATGGTGCAAACGGCAGTCCTGCAATGGGAGTGACTTCCCAGGCTGTAGATGATGCACTTTCTGATTCTCAGTCTAAAGATCCCAAATCATCATTAAGTCCAGCAATAACTGAAGAGGAACAGGATGAGAAAGCGAAGGCACCAGTTATTCAGCAGAAAGGGCGTTTCAAAGTTACTTCGGAGAGTGTCGATCTAGAAAAGGCAGCGGCATCCCCTATTCTGCAAAAAAGTCACAGTATGCAGGTGATTACCTCAAATTGTGCTACTCCTCTACCTTCTAATCTACCAACTCCTCTACTGACACCTCTACCTTCATCTGATGCTATACCAATTAATACTAGATCTTCTATGTTTCCAGTGTTGCACTCTGTTTTGCAGACAAATATTGTTCAAAGGGATGATATTTTGACTCTAATGAAGCAAATCTCAACTGGAGAAGTTTCAGCAGATGGCGTAGTTGATGTCTCAGCGGCACATATAACAGCAACGGAGAAATCTTTGCTTGAAGCAGCTCATGAAAGGGAGAAGGATTTACTTAACGAAGTAACTGAGTTACAGTGGAGGTATGTTCATTTTTGA 2043 40.82 MEKKTYPIGEDSYILYEEVGQGVSASVHRALCKPLNEIVAIKILDFERENCDLASIYREVQTMILVDHPNVLKSHCSFVNGHDLWIVMPYMSGGSCLHILKAAYPDGFEEVVIATVLREVLKGVEYLHNHGHIHRDIKAGNVLIDSRGGIKLGDFGVSACLFDSGDRQRVRNTFVGTPCWMAPEVMEQLNGYDFKADIWSFAITGLELAHGHAPFSKYPPMKVLMMTLQNAPPGLDYERDKKFSKSFKQMIASCLVKDPSKRPSASKLLKHSFFKQARSNDYIARTLLEGLPVLGDRIKALKRKEEDMLAQKKISDGKKEELSQNEYKRGISGWNFNLDDLKAQASLIQEFEESISEMSEVGSSNSLNALDVQEKKLQGQNSSEISDVEENAMLRRQPSMKANDTVNGKKSINESTIIGSCSQHQSSPRHDNQTENGSNEEVNLESSRRILGNTPNTIQHKRSISSNTSIQQEVSLPLNRRESYEMEKNGANGSPAMGVTSQAVDDALSDSQSKDPKSSLSPAITEEEQDEKAKAPVIQQKGRFKVTSESVDLEKAAASPILQKSHSMQVITSNCATPLPSNLPTPLLTPLPSSDAIPINTRSSMFPVLHSVLQTNIVQRDDILTLMKQISTGEVSADGVVDVSAAHITATEKSLLEAAHEREKDLLNEVTELQWRYVHF* 681
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19856048 19863683 + Chy4G080490.1 Chy04g01331 225230

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01331 680 ProSiteProfiles Protein kinase domain profile. 13 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy04g01331 680 SMART serkin_6 13 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy04g01331 680 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 1 675 - -
Chy04g01331 680 MobiDBLite consensus disorder prediction 375 479 - -
Chy04g01331 680 Pfam Protein kinase domain 15 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy04g01331 680 Gene3D Transferase(Phosphotransferase) domain 1 94 328 - -
Chy04g01331 680 Coils Coil 656 676 - -
Chy04g01331 680 MobiDBLite consensus disorder prediction 504 535 - -
Chy04g01331 680 MobiDBLite consensus disorder prediction 398 478 - -
Chy04g01331 680 Gene3D Phosphorylase Kinase; domain 1 2 89 - -
Chy04g01331 680 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 1 675 - -
Chy04g01331 680 CDD STKc_OSR1_SPAK 11 274 - -
Chy04g01331 680 MobiDBLite consensus disorder prediction 504 523 - -
Chy04g01331 680 SUPERFAMILY Protein kinase-like (PK-like) 11 275 IPR011009 -
Chy04g01331 680 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01331 K08835 OXSR1, STK39; serine/threonine-protein kinase OSR1/STK39 [EC:2.7.11.1] - csv:101211076 1283.09
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01331 Chy-Chr4:19856048 Chy09g00338 Chy-Chr9:2955913 0 dispersed
Chy04g01331 Chy-Chr4:19856048 Chy06g00495 Chy-Chr6:3358171 1.50E-105 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy07g00059 . 1 696 MAP Kinase Kinase Kinase Kinase AT1G53165 62.8 4.5e-223 771.2
Chy07g00059 . 1 692 MAP Kinase Kinase Kinase Kinase AT3G15220 64.8 7.7e-231 797.0
Chy07g00059 . 23 268 MAP Kinase Kinase Kinase Kinase AT1G69220 51.4 6.3e-67 252.7
Chy09g00338 . 1 641 MAP Kinase Kinase Kinase Kinase AT5G14720 68.3 1.3e-251 865.9
Chy06g02217 . 7 719 MAP Kinase Kinase Kinase Kinase AT4G24100 64.5 8.9e-246 846.7
Chy06g02217 . 11 720 MAP Kinase Kinase Kinase Kinase AT4G10730 65.0 2.2e-246 848.6
Chy09g00338 . 1 422 MAP Kinase Kinase Kinase Kinase AT1G70430 63.4 1.3e-149 526.9
Chy04g01331 . 4 367 MAP Kinase Kinase Kinase Kinase AT1G70430 62.0 1.6e-131 466.8
Chy06g02217 . 3 369 MAP Kinase Kinase Kinase Kinase AT1G70430 57.0 9.0e-119 424.5
Chy04g01331 . 1 676 MAP Kinase Kinase Kinase Kinase AT1G79640 59.5 2.3e-216 748.8
Chy09g00338 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 58.9 5.6e-103 371.7
Chy04g01331 . 6 324 MAP Kinase Kinase Kinase Kinase AT1G23700 52.5 2.5e-87 319.7
Chy06g02217 . 17 306 MAP Kinase Kinase Kinase Kinase AT1G23700 51.2 4.9e-75 278.9
Chy06g00495 CCT 32 496 MAP Kinase Kinase Kinase Kinase AT4G14480 57.1 7.5e-140 494.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002203 1 4 3 2 3 1 2 1 1 2 1 1 3 2 2 3 2 5 2 1 2 2 2 2 1 1 2 4 2 2 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71202 PF00069 Pkinase 2.20E-58 CL0016 Chy PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g01331 Chy_Chr04 FPKM 8.762458 8.472094 2.513122 3.098954 7.860824 8.118172 9.730163 2.149893 2.517677 2.768006