Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chy04g01335 | ATGGCGGATCTCAAAGAGCGGTTGCTTCCACCAAAACCTGCTTCGGCTATTAATCTTAGGGAGGCAATTAATAATCGACCATCAGCCTCTGGCAGGGTGCCTTTTCAAGGTGTGGATGTTCTAGGGCTGAAGAAGCGAGGTCAGGGACTTAGATCTTGGATCCGAGTAGATTCCTCTGGGAATTCCCAGATTATTGAGGTTGATAAGTTCACCATGATGCGTCGTTGTGATCTACCTGCACGTGATTTGCGGTTGCTTGATCCTTTGTTTGTTTACCCTTCAACAATTCTTGGTAGAGAGAAGGCTATTGTAGTCAATCTAGAGCAGATTCGATGCATTATAACAGCTGATGAAGTTTTGCTGTTAAATTCCCTTGATAGTTATGTACTGCAGTATGTGGTCGAGCTACAAAGACGATTAAAAGCCACTGGGGTTGATGAGGTTTGGCAGAATGATGCAAATCACGGTGCTGACTTAAACCGAAGAAGAGGAAGTAGGAATTTTGATAATGTATTTGTAAACACCTCTCCTGATTATCTGCCCTTTGAGTTCAGAGCTTTAGAAGTTGCTTTGGAGGCAGCTTGTACATTTCTTGATTCCCAGGCTGCAGAATTAGAAATCGAAGCATACCCATTGCTAGATGAACTTACGTCAAAAATCAGTACATTAAATTTGGAGCGGGTCCGACGCTTGAAAAGCAGACTTGTTGCTCTGACTCGTAGGGTTCAGAAGGTTAGGGATGAAATAGAACAACTTATGGATGATGATGGAGATATGGCAGAAATGTATCTCACCGAGAAGAAATTGAGAATGGAGTCATTTGTTTATGGTGATCAGTCTGTGACTGGATACAGATCAATTGATGGAGCGTCTATTTCTGCTCCTGTTTCTCCTGTATCTTCACCACCCGAAACTCGTAGACTCGAGAAGAGCCTGAGCATTGCCAGGAGCCGGCATGAAAGCACGAGAAGTTCAGAAAGTACCAATGAAAATATAGAGGAGCTCGAGATGCTACTTGAAGCATATTTTGTTGTCATTGATAGCACCCTGAATAAGTTGACATCGTTGAAGGAATACATCGACGACACAGAAGATTTCATCAACATCCAGTTGGATAATGTTCGTAATCAGTTGATCCAGTTTGAGCTACTGCTCACTACTGCAACATTTGTTGTTGCCATTTTTGGGGTGGTGGCTGGAATTTTTGGCATGAATTTTGAAATACCAATGTTTGGGAATCCTGATGCATTCAAGTACAAAAGGCTGATGCCACTTTAA | 1278 | 42.49 | MADLKERLLPPKPASAINLREAINNRPSASGRVPFQGVDVLGLKKRGQGLRSWIRVDSSGNSQIIEVDKFTMMRRCDLPARDLRLLDPLFVYPSTILGREKAIVVNLEQIRCIITADEVLLLNSLDSYVLQYVVELQRRLKATGVDEVWQNDANHGADLNRRRGSRNFDNVFVNTSPDYLPFEFRALEVALEAACTFLDSQAAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKLRMESFVYGDQSVTGYRSIDGASISAPVSPVSSPPETRRLEKSLSIARSRHESTRSSESTNENIEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFEIPMFGNPDAFKYKRLMPL* | 426 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 19898561 | 19901289 | + | Chy4G080530.1 | Chy04g01335 | 225234 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chy04g01335 | 425 | CDD | Mrs2_Mfm1p-like | 53 | 419 | IPR039204 | - | |
| Chy04g01335 | 425 | PANTHER | MAGNESIUM TRANSPORTER MRS2-10 | 3 | 419 | - | - | |
| Chy04g01335 | 425 | MobiDBLite | consensus disorder prediction | 293 | 307 | - | - | |
| Chy04g01335 | 425 | PANTHER | RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL | 3 | 419 | IPR039204 | - | |
| Chy04g01335 | 425 | SUPERFAMILY | Magnesium transport protein CorA, transmembrane region | 384 | 419 | IPR045863 | - | |
| Chy04g01335 | 425 | MobiDBLite | consensus disorder prediction | 309 | 329 | - | - | |
| Chy04g01335 | 425 | Gene3D | Magnesium transport protein CorA, transmembrane region | 125 | 378 | - | - | |
| Chy04g01335 | 425 | Gene3D | - | 41 | 124 | - | - | |
| Chy04g01335 | 425 | MobiDBLite | consensus disorder prediction | 293 | 329 | - | - | |
| Chy04g01335 | 425 | Coils | Coil | 228 | 255 | - | - | |
| Chy04g01335 | 425 | Gene3D | Magnesium transport protein CorA, transmembrane region | 385 | 423 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Chy01g00142 | Chy-Chr1:965737 | Chy04g01335 | Chy-Chr4:19898561 | 6.82E-35 | dispersed | |
| Chy01g00143 | Chy-Chr1:967409 | Chy04g01335 | Chy-Chr4:19898561 | 4.17E-78 | dispersed | |
| Chy03g00716 | Chy-Chr3:9647613 | Chy04g01335 | Chy-Chr4:19898561 | 2.39E-136 | dispersed | |
| Chy04g01335 | Chy-Chr4:19898561 | Chy06g01142 | Chy-Chr6:9979034 | 1.55E-98 | dispersed | |
| Chy12g00750 | Chy-Chr12:11501315 | Chy04g01335 | Chy-Chr4:19898561 | 5.87E-17 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chy04g01335 | K16075 | - | csv:101217419 | 755.747 |