Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01335 ATGGCGGATCTCAAAGAGCGGTTGCTTCCACCAAAACCTGCTTCGGCTATTAATCTTAGGGAGGCAATTAATAATCGACCATCAGCCTCTGGCAGGGTGCCTTTTCAAGGTGTGGATGTTCTAGGGCTGAAGAAGCGAGGTCAGGGACTTAGATCTTGGATCCGAGTAGATTCCTCTGGGAATTCCCAGATTATTGAGGTTGATAAGTTCACCATGATGCGTCGTTGTGATCTACCTGCACGTGATTTGCGGTTGCTTGATCCTTTGTTTGTTTACCCTTCAACAATTCTTGGTAGAGAGAAGGCTATTGTAGTCAATCTAGAGCAGATTCGATGCATTATAACAGCTGATGAAGTTTTGCTGTTAAATTCCCTTGATAGTTATGTACTGCAGTATGTGGTCGAGCTACAAAGACGATTAAAAGCCACTGGGGTTGATGAGGTTTGGCAGAATGATGCAAATCACGGTGCTGACTTAAACCGAAGAAGAGGAAGTAGGAATTTTGATAATGTATTTGTAAACACCTCTCCTGATTATCTGCCCTTTGAGTTCAGAGCTTTAGAAGTTGCTTTGGAGGCAGCTTGTACATTTCTTGATTCCCAGGCTGCAGAATTAGAAATCGAAGCATACCCATTGCTAGATGAACTTACGTCAAAAATCAGTACATTAAATTTGGAGCGGGTCCGACGCTTGAAAAGCAGACTTGTTGCTCTGACTCGTAGGGTTCAGAAGGTTAGGGATGAAATAGAACAACTTATGGATGATGATGGAGATATGGCAGAAATGTATCTCACCGAGAAGAAATTGAGAATGGAGTCATTTGTTTATGGTGATCAGTCTGTGACTGGATACAGATCAATTGATGGAGCGTCTATTTCTGCTCCTGTTTCTCCTGTATCTTCACCACCCGAAACTCGTAGACTCGAGAAGAGCCTGAGCATTGCCAGGAGCCGGCATGAAAGCACGAGAAGTTCAGAAAGTACCAATGAAAATATAGAGGAGCTCGAGATGCTACTTGAAGCATATTTTGTTGTCATTGATAGCACCCTGAATAAGTTGACATCGTTGAAGGAATACATCGACGACACAGAAGATTTCATCAACATCCAGTTGGATAATGTTCGTAATCAGTTGATCCAGTTTGAGCTACTGCTCACTACTGCAACATTTGTTGTTGCCATTTTTGGGGTGGTGGCTGGAATTTTTGGCATGAATTTTGAAATACCAATGTTTGGGAATCCTGATGCATTCAAGTACAAAAGGCTGATGCCACTTTAA 1278 42.49 MADLKERLLPPKPASAINLREAINNRPSASGRVPFQGVDVLGLKKRGQGLRSWIRVDSSGNSQIIEVDKFTMMRRCDLPARDLRLLDPLFVYPSTILGREKAIVVNLEQIRCIITADEVLLLNSLDSYVLQYVVELQRRLKATGVDEVWQNDANHGADLNRRRGSRNFDNVFVNTSPDYLPFEFRALEVALEAACTFLDSQAAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKLRMESFVYGDQSVTGYRSIDGASISAPVSPVSSPPETRRLEKSLSIARSRHESTRSSESTNENIEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFEIPMFGNPDAFKYKRLMPL* 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19898561 19901289 + Chy4G080530.1 Chy04g01335 225234

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01335 425 CDD Mrs2_Mfm1p-like 53 419 IPR039204 -
Chy04g01335 425 PANTHER MAGNESIUM TRANSPORTER MRS2-10 3 419 - -
Chy04g01335 425 MobiDBLite consensus disorder prediction 293 307 - -
Chy04g01335 425 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 3 419 IPR039204 -
Chy04g01335 425 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 384 419 IPR045863 -
Chy04g01335 425 MobiDBLite consensus disorder prediction 309 329 - -
Chy04g01335 425 Gene3D Magnesium transport protein CorA, transmembrane region 125 378 - -
Chy04g01335 425 Gene3D - 41 124 - -
Chy04g01335 425 MobiDBLite consensus disorder prediction 293 329 - -
Chy04g01335 425 Coils Coil 228 255 - -
Chy04g01335 425 Gene3D Magnesium transport protein CorA, transmembrane region 385 423 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01335 K16075 MRS2, MFM1; magnesium transporter - csv:101217419 755.747
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00142 Chy-Chr1:965737 Chy04g01335 Chy-Chr4:19898561 6.82E-35 dispersed
Chy01g00143 Chy-Chr1:967409 Chy04g01335 Chy-Chr4:19898561 4.17E-78 dispersed
Chy03g00716 Chy-Chr3:9647613 Chy04g01335 Chy-Chr4:19898561 2.39E-136 dispersed
Chy04g01335 Chy-Chr4:19898561 Chy06g01142 Chy-Chr6:9979034 1.55E-98 dispersed
Chy12g00750 Chy-Chr12:11501315 Chy04g01335 Chy-Chr4:19898561 5.87E-17 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy04g01335 . 1 426 MRS2 Gene Family AT1G16010 81.3 1.3e-191 666.0
Chy03g00716 . 1 378 MRS2 Gene Family AT1G16010 52.7 3.4e-107 385.6
Chy01g00143 . 37 298 MRS2 Gene Family AT1G16010 51.1 9.4e-57 218.0
Chy05g00362 . 1 366 MRS2 Gene Family AT5G64560 79.9 8.1e-158 553.5
Chy05g00411 . 1 370 MRS2 Gene Family AT5G64560 69.0 8.4e-131 463.8
Chy01g00143 . 1 321 MRS2 Gene Family AT3G19640 63.2 1.6e-94 343.6
Chy01g00142 . 12 183 MRS2 Gene Family AT3G19640 68.0 5.1e-56 215.7
Chy06g01142 . 59 444 MRS2 Gene Family AT3G58970 69.5 5.1e-140 494.6
Chy03g00716 . 3 378 MRS2 Gene Family AT2G03620 68.4 7.4e-136 480.7
Chy04g01335 . 13 423 MRS2 Gene Family AT2G03620 53.9 4.7e-106 381.7
Chy05g00362 . 1 328 MRS2 Gene Family AT5G09690 75.2 3.1e-126 448.4
Chy05g00411 . 1 332 MRS2 Gene Family AT5G09690 65.7 8.2e-111 397.1
Chy04g01335 . 40 383 MRS2 Gene Family AT5G09690 50.3 5.4e-78 288.1
Chy05g00362 . 23 288 MRS2 Gene Family AT5G09720 67.6 1.1e-88 323.6
Chy05g00411 . 34 292 MRS2 Gene Family AT5G09720 62.0 3.2e-77 285.4
Chy04g01335 . 1 419 MRS2 Gene Family AT1G80900 84.7 2.3e-188 655.2
Chy03g00716 . 1 378 MRS2 Gene Family AT1G80900 54.1 3.2e-105 379.0
Chy12g00750 . 53 392 MRS2 Gene Family AT5G22830 83.5 1.3e-157 553.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004467 2 3 1 2 1 1 2 1 1 1 1 1 1 2 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g01335 Chy_Chr04 FPKM 26.531532 23.020613 15.878094 15.886509 7.518827 4.716582 6.252287 12.337729 11.022205 11.668437