Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01342 ATGGCGGGTGGGGCGGCGCAGGTTAGGAATGTTCTTTTTGGGAAATACGAAATGGGTCGGCTTTTGGGGAAAGGAACCTTTGCGAAGGTCTATTATGGAAGAAACTTGATGACCCACGAGAGTGTTGCCATTAAAGTGATTCTCAAGGACAGGGTGAAGAAAAAGGGGCTTCTTGAGCAAATCCGGCGAGAAATTTCTGTTATGGGGTTGGTTCGTCATCCTCATATTGTGGAATTGAAAGAAGTTATGGCGACGAAATCGAAGGTGTATTTTGTGATGGAGTATGTTAATGGAGGCGAACTGTTTGTGAAGTTGTCTCAACTAGGGAAATTGACTGAGGATGGAGCGAGGAATTATTTTCAACAGCTTATCTCTGCCGTGGACTTTTGCCATAGCCGTGGTGTCTCTCACCGTGATTTGAAGCCTGAGAATCTCCTTCTTGACGTGAATGGGAATTTGAAGGTTTCTGATTTTGGTCTCTCTGCCCTGCCGGAGCAGCTACGGATTGATGGTTTGCTTCACACACGGTGTGGAACTCCGGCTTATGTGGCGCCTGAGGTGCTCAGAAAGAGAGGATACGATGGCGCTAAGGCGGATATCTGGTCTTGCGGGGTCATTTTGTTTGTGTTGCTTGCTGGGACTTTGCCATTTCGAGCTGATAATGCGATGAAGTTGTATAGGAAGATTTTCAAGGCGGAGTTTGAGTTCCCTCCATGGTTTTCTTCAGAAGCCAAGGAAATGGTGTCTAAGCTTCTGGTTGTTGATCCTCAAAAGAGAGCTTCAATGGTTGAGATAATGCATAGTCCTTGGTTTCAAAAGGGCTTCACAAAGCCAGTTTCATTCATTGAGAAAGATGAATTCAACAATGAATTCTCTGAATTGGCTAATCCCAAGTTGTTGTCATCTTCTCCTCCTTTTTACAATGCATTTGAGTTCATTTCCTCAATGTCCTCTGGTTTTGACTTGTCTAGTTTGTTTGAAAGCAAGAAGAAACAACGCTCTATTTTCACTTCAAAATGCCCTGCTTCAGCCATTTTAGCCAAGCTTCAATCTCTGGCCGTGAAGCTCAACTTCAAAGCTACTAACTTAAAGGAGTTCAAGGTGAGACTGCAGGCCAAGGAGGAGGGGAGGAAAGGGAAGTTGACAGTGACCGCAGAGGTTTACGAGGTGGCACCGGAGCTGGCAGTCGTAGAGTTCTCGAAGTCGGCGGGCGACACTTTGGAATACAACAAGTTATGTGAGAAGGATGTGAGGCCCGCATTGAAAGACATAGTTTGGAGCTGGCAAGGAGAAAACGAAGTGCCTTTAACAGTGGATTCTATGCAAAATGACCATTGA 1338 45.44 MAGGAAQVRNVLFGKYEMGRLLGKGTFAKVYYGRNLMTHESVAIKVILKDRVKKKGLLEQIRREISVMGLVRHPHIVELKEVMATKSKVYFVMEYVNGGELFVKLSQLGKLTEDGARNYFQQLISAVDFCHSRGVSHRDLKPENLLLDVNGNLKVSDFGLSALPEQLRIDGLLHTRCGTPAYVAPEVLRKRGYDGAKADIWSCGVILFVLLAGTLPFRADNAMKLYRKIFKAEFEFPPWFSSEAKEMVSKLLVVDPQKRASMVEIMHSPWFQKGFTKPVSFIEKDEFNNEFSELANPKLLSSSPPFYNAFEFISSMSSGFDLSSLFESKKKQRSIFTSKCPASAILAKLQSLAVKLNFKATNLKEFKVRLQAKEEGRKGKLTVTAEVYEVAPELAVVEFSKSAGDTLEYNKLCEKDVRPALKDIVWSWQGENEVPLTVDSMQNDH* 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20031321 20032658 + Chy4G080600.1 Chy04g01342 225241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01342 445 ProSitePatterns Protein kinases ATP-binding region signature. 22 54 IPR017441 GO:0005524
Chy04g01342 445 CDD STKc_SnRK3 15 270 - -
Chy04g01342 445 SMART serkin_6 16 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy04g01342 445 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672|GO:0006468
Chy04g01342 445 Pfam Protein kinase domain 16 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy04g01342 445 ProSiteProfiles Protein kinase domain profile. 16 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy04g01342 445 Gene3D Transferase(Phosphotransferase) domain 1 8 306 - -
Chy04g01342 445 Pfam NAF domain 304 360 IPR004041 GO:0007165
Chy04g01342 445 CDD CIPK_C 308 422 - -
Chy04g01342 445 PANTHER - 9 434 - -
Chy04g01342 445 SUPERFAMILY Protein kinase-like (PK-like) 12 272 IPR011009 -
Chy04g01342 445 Gene3D Kinase associated domain 1, KA1 307 427 - -
Chy04g01342 445 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 25-RELATED 9 434 - -
Chy04g01342 445 ProSiteProfiles NAF domain profile. 302 327 IPR018451 GO:0007165
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01342 Chy-Chr4:20031321 Chy05g01236 Chy-Chr5:16762980 1.51E-168 dispersed
Chy04g01342 Chy-Chr4:20031321 Chy07g00333 Chy-Chr7:2713983 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71204 PF00069 Pkinase 2.40E-75 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01342 - - csv:101218600 866.3