Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01343 ATGGCTGCTGGAGGGTCTGGTTCTGGGCAGCCACAATTCCTTGTGAGAGCTGGGGATGAGAGTTTTTCGCATGCTCCGCTGATCGAGAACCCGGAACCTGATCAGATTATTGTTCCTGATAAGAAAAGCTGGAAGAACCTTTTTGCATACATGGGCCCGGGATTTCTTGTTTCTATTGCATATATTGATCCTGGGAATTTTGAGACTGATCTGCAATCTGGTGCACAGTACAAGTATGGGTTGCTTTGGATCATATTAGTGGCTTCCTTTGCTGCCCTCATCATTCAGTCTTTAGCAGCCAATCTAGGGGTTGTCACGGGAAAACATTTAGCAGAGCACTGTAAAGCTGAGTACCCCAAGGCGCAAAATTTCATCCTCTGGGTCCTTGCTGAAATTGCAATTGTTGCATGTGATATTCCTGAAGTTATAGGAACTGCTTTTGCATTGAATATGCTCTTCAGCATTCCTGTTTGGTGTGGAGTTCTTCTGACAGGGCTTAGTACACTATTACTTCTTGCACTGCAGCAATATGGGATTAGAAAGCTTGAATTCTTGATTGCCTTTCTTGTGTTGACAATTGCGATTTGCTTCTTCCTGGAGCTGGGCTATGCAAAGCCGGATGTTGGAGAAATATTTTATGGGCTGTTTGTCCCTCAATTGAAAGGAAGTGGTGCTACTGGTCTTGCAATTTCACTTCTTGGTGCTATGGTTATGCCACACAATCTCTTTCTTCATTCAGCACTGGTGCTCTCTAGGAAAATACCCCGTTCCCTTTCTGGCATCAAGGAAGCTTGCAGATTTTATATGATCGAGAGTGGCTTTGCTCTTATGGTGGCCTTCCTCATTAATGTGTCAGTCATTTCAGTTAGTGGTGCAGTTTGCAATTCCCCAGATCTAAATAAGGAGGACCAAATGAGCTGTAATGACTTGGACTTGAATAAAGCTTCATTTTTATTGAGAAATGTATTGGGTAAATGGAGTTCAAAACTTTTTGCTATTGCTTTGTTGGCATCGGGGCAGAGTTCTACCATAACAGGAACCTACGCAGGACAGTATGTTATGCAGGGGTTTCTTGATTTGAAACTGACGCCATGGGTAAGAAACTTTTTAACTCGAAGCTTAGCAATTGTTCCTAGTTTGATCGTTGCAATCATTGGTGGGTCTTCTGGGGCTGGGAAGCTGATCATTATTGCGTCGATGATTTTGTCATTTGAACTTCCTTTTGCTCTAGTCCCCCTTCTAAAGTTTACAAGCAGTAAGGCCAAGATGGGACCGCATGTCAACTCTACTGCGATTACAGTATTGACATGGATTATTGGATTCCTCATCATGGCTATCAATATATACTACCTCATGAGCCGTTTCATCCATGTGCTCCTTCATAACGACCTCCATCTTGCAGTGGTCGTCTTCATAGGGATACTTGGATTTTCAGGCGTGGCACTATATTTAGCTGGAATTGCTTATCTAGTTTTGAGAAAGACCAAGGAGATAAGTCATCTCTTAGCACTAACAGCAGAAGAAAGTCGAAGACTGAGCAACGAGCTAAGTAAGACATCGGGATATGATCTCCCAAACGAAGATATAGGAAGCATGCAGTTGCCTCAAAGAATTAGAACTACCAATGATGTAAACTGA 1638 42.86 MAAGGSGSGQPQFLVRAGDESFSHAPLIENPEPDQIIVPDKKSWKNLFAYMGPGFLVSIAYIDPGNFETDLQSGAQYKYGLLWIILVASFAALIIQSLAANLGVVTGKHLAEHCKAEYPKAQNFILWVLAEIAIVACDIPEVIGTAFALNMLFSIPVWCGVLLTGLSTLLLLALQQYGIRKLEFLIAFLVLTIAICFFLELGYAKPDVGEIFYGLFVPQLKGSGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSLSGIKEACRFYMIESGFALMVAFLINVSVISVSGAVCNSPDLNKEDQMSCNDLDLNKASFLLRNVLGKWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLKLTPWVRNFLTRSLAIVPSLIVAIIGGSSGAGKLIIIASMILSFELPFALVPLLKFTSSKAKMGPHVNSTAITVLTWIIGFLIMAINIYYLMSRFIHVLLHNDLHLAVVVFIGILGFSGVALYLAGIAYLVLRKTKEISHLLALTAEESRRLSNELSKTSGYDLPNEDIGSMQLPQRIRTTNDVN* 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20045726 20050844 + Chy4G080610.1 Chy04g01343 225242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01343 545 Hamap Divalent metal cation transporter MntH [mntH]. 33 455 IPR001046 GO:0016020|GO:0030001|GO:0046873
Chy04g01343 545 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 46 423 IPR001046 GO:0016020|GO:0030001|GO:0046873
Chy04g01343 545 PRINTS Natural resistance-associated macrophage protein signature 126 152 IPR001046 GO:0016020|GO:0030001|GO:0046873
Chy04g01343 545 PRINTS Natural resistance-associated macrophage protein signature 179 200 IPR001046 GO:0016020|GO:0030001|GO:0046873
Chy04g01343 545 PRINTS Natural resistance-associated macrophage protein signature 229 252 IPR001046 GO:0016020|GO:0030001|GO:0046873
Chy04g01343 545 PRINTS Natural resistance-associated macrophage protein signature 339 358 IPR001046 GO:0016020|GO:0030001|GO:0046873
Chy04g01343 545 PRINTS Natural resistance-associated macrophage protein signature 399 418 IPR001046 GO:0016020|GO:0030001|GO:0046873
Chy04g01343 545 PRINTS Natural resistance-associated macrophage protein signature 154 173 IPR001046 GO:0016020|GO:0030001|GO:0046873
Chy04g01343 545 PRINTS Natural resistance-associated macrophage protein signature 367 384 IPR001046 GO:0016020|GO:0030001|GO:0046873
Chy04g01343 545 Pfam Natural resistance-associated macrophage protein 67 429 IPR001046 GO:0016020|GO:0030001|GO:0046873
Chy04g01343 545 PANTHER METAL TRANSPORTER NRAMP1 8 540 - -
Chy04g01343 545 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 8 540 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01311 Chy-Chr4:19609454 Chy04g01343 Chy-Chr4:20045726 0 dispersed
Chy04g01343 Chy-Chr4:20045726 Chy11g00575 Chy-Chr11:6554437 6.23E-109 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01343 K21398 - csv:101209649 1019.99