Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01347 ATGGCTCGAGAAACTCCCGACAGCCACTCCGGCAATCCTCCTTCCACGCCTGATTCCCCCACCACCTCCGCTGGTTTCGAAACAGATCAGCTTCCTCATCTCAGCCAAACTTCCGACAACTACCTCGATGAGGACGAAGCCGCCGTCGATCCTCATATCCTTCCCGACGAGCCTGATCCCGATGAAGAGGAGGAAGGAGAAGATCTCTACCACGACAATTTCTTGGACGATTACCGACGGATGGACGAGCATGACCAGTACGAGTCCTTGGGCCTCGACGATTCGTTAGAGGATGAGAGGGATTTGGTTCAGATTATGAAAGACCGACAAGCTGCCGAGATAGAACTGGAAAATCGCGATGCTCAGTTCACCCGTCGGAAGCTTCCTGAACTCTTACATGATCATGACTCTGAGGACGACAACTACAGGCCTTCAAAAAGATCAAGAGCAGATTTTCGGCCTCCAGCTGGTGGAAGAGGCTATGATGACATTGATGGTATGCAAAGTTCTCCAGGTAGATCACAAAGGGAAAACTCACGAGATGATGTGCCCATGACAGATCAATCTGTTGATGACCAATATGAGGATGAAGATGATGATGAAAATGAGAATGAGATGTATCGTGTTCAAGGGCCACTTAGAGAACATGTTACCATGGATGCGGTTCGGCGCTTTATAGGCAAAAAATTTAAGAAATTTTTGGAAACATATGTGAATCCAAAGAGTGGAAATGGTGAGCTTGAGTACATGCGATTGATAAATGAGATGGTGTTAGCCAATAGGTGCAGTTTGGAGATTGATTACAAACAGTTCATCTTTGTTCATCCAAATATAGCAATTTGGTTGGCTGATGCACCCCAGCCCGTCTTAGAAGTTATGGAAGATGTTGCAAAGAAGGTTGTCTTTGACATACATCCAAACTACAAAAATATCCACCAAAAGATCTACGTTCGGATCAATAATTTACCAGTCTATGATCAGATTCGAAATATAAGGCAAATTCATTTAAATACCATGATTCGTATTGGGGGTGTAGTGACCCGACGCTCTGGTGTCTTTCCCCAGTTGCAGCAGGTGAAGTATGATTGTAATAAGTGTGGCACAATATTGGGACCTTTTTTTCAGAATTCTTATTCAGAGGTCAAGGTTGGTTCTTGTCCTGAATGCCAATCCAAAGGGCCATTCACTGTAAATGTTGAGCAGACTGTATACAGGAATTATCAAAAGCTAACCCTCCAAGAAAGCCCAGGAATTGTGCCAGCTGGTCGACTTCCTAGGTACAAGGAAGTGATACTATTGAATGATCTAATTGACTGTGCTCGTCCTGGGGAAGAAATTGAAGTCACAGGCATTTATACAAATAATTTTGACTTATCATTGAATACAAAGAACGGTTTTCCTGTATTTTCCACTGTTGTTGAAGCAAATTATATTACCAAGAAGCAAGATCTTTTTTCTGCTTACAAGATTACCCAGGAAGATAAGGAAGAGATTGAGAAGTTAGCTAAAGACCCTAGAATTGGAGAAAGGATAATCAAGTCCATTGCACCATCAATCTATGGTCACGAGGACATAAAAACAGCAATTGCTCTTGCAATGTTTGGAGGTCAAGAAAAAAATGTCGAAGGGAAACATCGATTGCGAGGCGATATCAATGTTCTTTTATTGGGTGATCCTGGCACAGCCAAATCACAATTTCTTAAGTATGTTGAGAAAACTGGGCATAGAGCAGTGTACACCACAGGGAAAGGAGCTTCAGCTGTAGGACTGACAGCAGCAGTGCATAAGGATCCTGTCACAAGGGAATGGACTCTTGAAGGAGGTGCCCTTGTATTAGCCGATAGAGGAATTTGTCTTATTGATGAATTTGACAAAATGAATGATCAGGACAGGGTGAGTATCCACGAGGCAATGGAGCAGCAGAGCATCAGCATATCAAAAGCTGGAATAGTCACTTCTCTTCAAGCCAGATGTTCGGTCATTTCTGCTGCCAATCCAATTGGAGGAAGATACGACTCCTCAAAAACATTTTCACAAAATGTTGAGCTGACCGATCCTATCATTTCTCGATTTGACATCCTCTGTGTTGTTAAGGATGTGGTAGACTCTGTAGCAGACGAGATGCTTGCTACGTTTGTGGTTGACAGTCATTTCAAATCACAGCCAAAGGGAGCCAATCTTGATGACAAGTCTATAAACGAATCTCAGGAGGACAGTCAAGACTCAGCAAGGCCACTGGATCCGGAGGTGCTCCCCCAAGATCTTTTGAGGAAGTACATAACTTATTCCAAGTTGAATGTTTTTCCAAGGTTGCATGATGCTGATTTGGATAAGTTAACGCATGTCTACGCAGAATTACGAAGGGAATCTTCTCATGGGCAAGGAGTTCCCATTGCAGTTAGGCACATCGAGTCAATGATACGCATGTCTGAAGCACATGCAAGAATGCACCTTAGACAGCACGTCACACAAGAAGATGTTGATATGGCAATTCGTGTATTACTTGATTCCTTCATTTCGACCCAGAAATTTGGGGTGCAGAAAGCTCTGCAAAAGAGCTTCAGAAAGTATATGACTTTCAAGAAGGATTACAATGAACTGCTGCTATATCTTCTCCGAGAGCTTGTGAAGAATGCAATTCACTTCGAGGAAATTGTTCGCGGATCCACATCAGAGATTACCCAAATCAATGTGAAATTGGAAGACCTACAAAGCAAGGCACAAGAGCATGAAATTTATGATCTGAAACCATTCTTCAACAGCTCTCATTTTTCAAATGCTAATTTTGTGCTGGATGAAGAGCATGGACTAATCAGGCATAACCTTGCCAGATGA 2835 42.93 MARETPDSHSGNPPSTPDSPTTSAGFETDQLPHLSQTSDNYLDEDEAAVDPHILPDEPDPDEEEEGEDLYHDNFLDDYRRMDEHDQYESLGLDDSLEDERDLVQIMKDRQAAEIELENRDAQFTRRKLPELLHDHDSEDDNYRPSKRSRADFRPPAGGRGYDDIDGMQSSPGRSQRENSRDDVPMTDQSVDDQYEDEDDDENENEMYRVQGPLREHVTMDAVRRFIGKKFKKFLETYVNPKSGNGELEYMRLINEMVLANRCSLEIDYKQFIFVHPNIAIWLADAPQPVLEVMEDVAKKVVFDIHPNYKNIHQKIYVRINNLPVYDQIRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKYDCNKCGTILGPFFQNSYSEVKVGSCPECQSKGPFTVNVEQTVYRNYQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSLNTKNGFPVFSTVVEANYITKKQDLFSAYKITQEDKEEIEKLAKDPRIGERIIKSIAPSIYGHEDIKTAIALAMFGGQEKNVEGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGHRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVISAANPIGGRYDSSKTFSQNVELTDPIISRFDILCVVKDVVDSVADEMLATFVVDSHFKSQPKGANLDDKSINESQEDSQDSARPLDPEVLPQDLLRKYITYSKLNVFPRLHDADLDKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMHLRQHVTQEDVDMAIRVLLDSFISTQKFGVQKALQKSFRKYMTFKKDYNELLLYLLRELVKNAIHFEEIVRGSTSEITQINVKLEDLQSKAQEHEIYDLKPFFNSSHFSNANFVLDEEHGLIRHNLAR* 945
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20103179 20108659 + Chy4G080650.1 Chy04g01347 225246

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01347 944 MobiDBLite consensus disorder prediction 125 203 - -
Chy04g01347 944 MobiDBLite consensus disorder prediction 1 67 - -
Chy04g01347 944 ProSiteProfiles MCM family domain profile. 507 713 IPR001208 GO:0003677|GO:0005524|GO:0032508
Chy04g01347 944 MobiDBLite consensus disorder prediction 188 203 - -
Chy04g01347 944 CDD MCM2 510 837 - -
Chy04g01347 944 MobiDBLite consensus disorder prediction 8 42 - -
Chy04g01347 944 Pfam MCM AAA-lid domain 754 838 IPR041562 -
Chy04g01347 944 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 337 354 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Chy04g01347 944 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 471 482 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Chy04g01347 944 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 395 409 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Chy04g01347 944 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 360 372 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Chy04g01347 944 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 456 467 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Chy04g01347 944 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 144 937 IPR031327 GO:0003677|GO:0005524|GO:0032508
Chy04g01347 944 ProSitePatterns MCM family signature. 616 624 IPR018525 GO:0003677|GO:0005524|GO:0006260
Chy04g01347 944 PANTHER DNA HELICASE 144 937 - -
Chy04g01347 944 MobiDBLite consensus disorder prediction 125 158 - -
Chy04g01347 944 PRINTS Mini-chromosome maintenance (MCM) protein family signature 687 695 IPR001208 GO:0003677|GO:0005524|GO:0032508
Chy04g01347 944 PRINTS Mini-chromosome maintenance (MCM) protein family signature 608 622 IPR001208 GO:0003677|GO:0005524|GO:0032508
Chy04g01347 944 PRINTS Mini-chromosome maintenance (MCM) protein family signature 660 672 IPR001208 GO:0003677|GO:0005524|GO:0032508
Chy04g01347 944 PRINTS Mini-chromosome maintenance (MCM) protein family signature 548 563 IPR001208 GO:0003677|GO:0005524|GO:0032508
Chy04g01347 944 PRINTS Mini-chromosome maintenance (MCM) protein family signature 636 649 IPR001208 GO:0003677|GO:0005524|GO:0032508
Chy04g01347 944 Pfam MCM N-terminal domain 228 321 IPR027925 -
Chy04g01347 944 MobiDBLite consensus disorder prediction 722 747 - -
Chy04g01347 944 Gene3D - 220 324 - -
Chy04g01347 944 Pfam MCM OB domain 327 454 IPR033762 -
Chy04g01347 944 Gene3D - 487 861 IPR027417 -
Chy04g01347 944 Pfam MCM P-loop domain 495 717 IPR001208 GO:0003677|GO:0005524|GO:0032508
Chy04g01347 944 Gene3D - 355 405 - -
Chy04g01347 944 MobiDBLite consensus disorder prediction 730 744 - -
Chy04g01347 944 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 517 841 IPR027417 -
Chy04g01347 944 SUPERFAMILY Nucleic acid-binding proteins 229 476 IPR012340 -
Chy04g01347 944 Pfam Mini-chromosome maintenance protein 2 44 199 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Chy04g01347 944 Gene3D - 328 453 IPR012340 -
Chy04g01347 944 SMART mcm 324 839 IPR031327 GO:0003677|GO:0005524|GO:0032508
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01347 K02540 MCM2; DNA replication licensing factor MCM2 [EC:5.6.2.3] - csv:101219546 1809.65
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00231 Chy-Chr1:1590255 Chy04g01347 Chy-Chr4:20103179 5.67E-80 dispersed
Chy02g00156 Chy-Chr2:1125569 Chy04g01347 Chy-Chr4:20103179 7.36E-107 dispersed
Chy04g01347 Chy-Chr4:20103179 Chy05g01255 Chy-Chr5:16905791 8.74E-107 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy04g00760 . 107 798 Core DNA Replication Machinery Family AT4G14700 66.0 1.6e-267 919.1
Chy02g00078 . 1 376 Core DNA Replication Machinery Family AT4G14700 69.2 8.0e-155 544.7
Chy02g00080 . 83 223 Core DNA Replication Machinery Family AT4G14700 64.4 3.8e-48 190.3
Chy04g00760 . 107 798 Core DNA Replication Machinery Family AT4G12620 67.9 7.0e-276 946.8
Chy02g00078 . 1 376 Core DNA Replication Machinery Family AT4G12620 69.5 2.3e-154 543.1
Chy02g00080 . 83 223 Core DNA Replication Machinery Family AT4G12620 66.7 9.8e-52 202.2
Chy03g01522 . 2 360 Core DNA Replication Machinery Family AT2G37560 65.5 1.1e-140 496.5
Chy10g00355 . 9 413 Core DNA Replication Machinery Family AT2G01120 64.6 1.8e-153 539.3
Chy11g01648 . 3 524 Core DNA Replication Machinery Family AT4G29910 58.2 8.9e-169 590.5
Chy05g00660 . 1 254 Core DNA Replication Machinery Family AT1G26840 66.5 2.4e-90 328.9
Chy01g00870 . 34 829 Core DNA Replication Machinery Family AT1G79150 57.8 2.5e-244 842.0
Chy04g01347 . 10 939 Core DNA Replication Machinery Family AT1G44900 75.5 0.0e+00 1347.0
Chy02g00156 . 1 575 Core DNA Replication Machinery Family AT5G46280 80.7 1.1e-267 919.1
Chy01g00756 . 1 821 Core DNA Replication Machinery Family AT2G16440 76.8 0.0e+00 1120.9
Chy05g01255 . 1 717 Core DNA Replication Machinery Family AT2G07690 77.8 0.0e+00 1078.2
Chy02g00002 . 7 840 Core DNA Replication Machinery Family AT5G44635 72.0 0.0e+00 1190.3
Chy01g01752 . 4 722 Core DNA Replication Machinery Family AT4G02060 85.1 0.0e+00 1218.4
Chy11g01344 . 38 500 Core DNA Replication Machinery Family AT2G29680 60.9 1.2e-159 560.1
Chy11g01344 . 22 465 Core DNA Replication Machinery Family AT1G07270 58.2 1.5e-140 496.5
Chy01g01391 . 1 594 Core DNA Replication Machinery Family AT3G25100 76.4 4.1e-257 884.0
Chy04g02091 . 12 783 Core DNA Replication Machinery Family AT3G09660 72.6 0.0e+00 1085.5
Chy01g00231 . 10 642 Core DNA Replication Machinery Family AT2G14050 77.8 2.7e-286 981.1
Chy11g00257 . 18 420 Core DNA Replication Machinery Family AT2G20980 55.8 8.0e-116 414.1
Chy06g01182 . 7 192 Core DNA Replication Machinery Family AT1G77320 66.7 3.6e-72 270.4
Chy01g02007 . 1 196 Core DNA Replication Machinery Family AT1G80190 66.5 3.6e-72 268.1
Chy07g00809 . 743 887 Core DNA Replication Machinery Family AT3G12530 71.7 1.8e-60 228.8
Chy03g00186 . 22 191 Core DNA Replication Machinery Family AT1G19080 67.6 1.1e-62 236.5
Chy03g00186 . 22 191 Core DNA Replication Machinery Family AT3G55490 67.6 1.1e-62 236.5
Chy06g00159 . 2 164 Core DNA Replication Machinery Family AT5G49010 61.3 3.1e-49 191.8
Chy11g00218 . 1 1546 Core DNA Replication Machinery Family AT5G67100 60.0 0.0e+00 1748.0
Chy12g01485 . 81 704 Core DNA Replication Machinery Family AT1G67630 61.7 4.3e-217 751.1
Chy11g01796 . 8 447 Core DNA Replication Machinery Family AT1G67320 64.9 1.9e-183 639.0
Chy09g00091 . 7 469 Core DNA Replication Machinery Family AT5G41880 61.1 1.5e-166 582.8
Chy08g00986 . 1 1000 Core DNA Replication Machinery Family AT5G63960 80.7 0.0e+00 1652.1
Chy04g01776 . 41 282 Core DNA Replication Machinery Family AT2G42120 78.9 1.6e-117 419.9
Chy11g01796 . 8 447 Core DNA Replication Machinery Family AT1G67320 64.9 1.9e-183 639.0
Chy11g00894 . 1 2096 Core DNA Replication Machinery Family AT1G08260 71.3 0.0e+00 2984.5
Chy11g00894 . 25 2203 Core DNA Replication Machinery Family AT2G27120 67.8 0.0e+00 2949.5
Chy12g01602 . 1 258 Core DNA Replication Machinery Family AT5G22110 76.4 9.7e-119 424.1
Chy05g00194 . 1 921 Core DNA Replication Machinery Family AT5G22010 63.5 1.3e-307 1052.4
Chy06g01971 . 1 332 Core DNA Replication Machinery Family AT1G63160 90.7 6.0e-173 603.6
Chy08g00054 . 1 355 Core DNA Replication Machinery Family AT5G27740 84.8 8.6e-178 619.8
Chy07g00561 . 1 334 Core DNA Replication Machinery Family AT1G21690 81.8 2.4e-153 538.5
Chy03g00774 . 6 220 Core DNA Replication Machinery Family AT1G77470 76.2 1.8e-93 339.7
Chy03g00775 . 1 216 Core DNA Replication Machinery Family AT1G77470 78.3 3.5e-89 325.5
Chy05g01462 . 26 618 Core DNA Replication Machinery Family AT2G06510 67.7 6.6e-250 860.1
Chy06g02198 . 28 701 Core DNA Replication Machinery Family AT2G06510 51.3 1.6e-200 696.0
Chy02g02440 . 1 623 Core DNA Replication Machinery Family AT5G08020 67.6 3.7e-245 844.3
Chy06g02198 . 6 810 Core DNA Replication Machinery Family AT5G45400 53.1 9.1e-234 807.0
Chy02g02440 . 1 618 Core DNA Replication Machinery Family AT5G61000 65.9 6.3e-240 827.0
Chy06g02198 . 1 796 Core DNA Replication Machinery Family AT4G19130 54.2 5.6e-230 794.3
Chy08g01078 . 1 373 Core DNA Replication Machinery Family AT5G26680 85.6 1.4e-182 636.0
Chy06g00300 . 1 1095 Core DNA Replication Machinery Family AT1G08840 52.9 2.9e-298 1021.5
Chy11g00843 . 2 759 Core DNA Replication Machinery Family AT1G08130 69.2 5.4e-297 1016.9
Chy11g00843 . 158 759 Core DNA Replication Machinery Family AT1G49250 69.3 4.9e-243 837.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008086 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g01347 Chy_Chr04 FPKM 2.24087 3.918022 27.199703 25.217155 0.0 0.0 0.523794 3.827804 4.282651 4.462481