Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01368 ATGTACCATCATCAACACAGAGGGAAGAGCATTCACTCATCAGAAAGGCATATGTTTTTACAAGGTGGTGGAAATGGGGGTGGAGGAGATTCAGGACTTGTTCTTTCAACTGATGCTAAGCCTAGGCTTAAATGGACTCCTGATTTGCATGACCGCTTTGTTGAAGCTGTTAATCAATTGGGAGGGGCTGACAAGGCCACTCCTAAAACTGTGATGAAAATCATGGGCATTCCTGGACTTACTTTGTACCACTTGAAAAGCCATCTTCAGAAATACAGGCTAAGCAAGAATTTGCATGGACAAGCAAATGGTGGAAGTGGAACAAATAAAACTGGAACAGTGGCGGTTTCCGTAGACCAAAGATTGGGAGAGGCAAATGGAGCAGCAGCAGCAGCTCGTACTAGCAATATTGTTGTCGGCCCTCAACCCTCCTCCCAGTCCAACAAAAGCCTTCAAATAAGTGAAACAATACAGATGCAAATCGAAGTGCAGAAAAGGCTACACGAGCAACTCGAGGTACAAAGGCATTTACAACTTAGAATAGAAGCACAAGGGAAGTATCTCCAAACAGTATTGGAGAAAGCACAGGAAACATTAGGAAGACAAAACTTAGGGACAGTAGGACTTGAAGCAGCCAAAGTACAGCTTTCAGAATTAGTCTCTAAAGTCTCCACTCAATGTCTAACCGCAGCATTTCCAGAGCTACACAATCAAAGCCAAAGCCAAAGGGTTTGTACTCAACAACAAAGCCAACCCCCTGACTGCTCAATGGACAGTTGCTTGACATCCAGCGAGGGGGGCTCCAAGGATCAACAAGCCCAACAACAACAACAAGTCCTCCTCCACAACAGCCACTTGGCCCTCCGACCCTACGCAGACCGAGCCTCGTCAGGTGCTCCCGACCACAGGCTTCATGGTCTGTCCATGAGCATTGGACTGGTGCAAGGGGAGAAAGCAGGGCCGGAAGGGTATAATGGGTATTCAACATCTGAGGGTCAGAGATTGTTTGGGAGTAAAAGGACGAAGGATGCAGTAATGGAAAAGGAGACGGGGTTTAGATATAGAATGGATTTGAATAATGCTGGAGAGGATCAATTAATTAGCAATAATAATAATAATGATCATACGTCTTCTACTACTTGCAAGATGTTTGATCTTAATGGCTTTAGCTAA 1173 45.1 MYHHQHRGKSIHSSERHMFLQGGGNGGGGDSGLVLSTDAKPRLKWTPDLHDRFVEAVNQLGGADKATPKTVMKIMGIPGLTLYHLKSHLQKYRLSKNLHGQANGGSGTNKTGTVAVSVDQRLGEANGAAAAARTSNIVVGPQPSSQSNKSLQISETIQMQIEVQKRLHEQLEVQRHLQLRIEAQGKYLQTVLEKAQETLGRQNLGTVGLEAAKVQLSELVSKVSTQCLTAAFPELHNQSQSQRVCTQQQSQPPDCSMDSCLTSSEGGSKDQQAQQQQQVLLHNSHLALRPYADRASSGAPDHRLHGLSMSIGLVQGEKAGPEGYNGYSTSEGQRLFGSKRTKDAVMEKETGFRYRMDLNNAGEDQLISNNNNNDHTSSTTCKMFDLNGFS* 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20330154 20332777 - Chy4G080860.1 Chy04g01368 225267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01368 390 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 37 97 IPR017930 -
Chy04g01368 390 MobiDBLite consensus disorder prediction 1 26 - -
Chy04g01368 390 Pfam Myb-like DNA-binding domain 42 93 IPR001005 -
Chy04g01368 390 MobiDBLite consensus disorder prediction 239 277 - -
Chy04g01368 390 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 4 390 IPR044848 GO:0003700
Chy04g01368 390 Pfam MYB-CC type transfactor, LHEQLE motif 151 198 IPR025756 -
Chy04g01368 390 Gene3D - 39 97 - -
Chy04g01368 390 PANTHER MYB-RELATED PROTEIN 2 4 390 - -
Chy04g01368 390 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 40 95 IPR006447 GO:0003677
Chy04g01368 390 SUPERFAMILY Homeodomain-like 39 95 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00844 Chy-Chr1:7393449 Chy04g01368 Chy-Chr4:20330154 4.62E-52 dispersed
Chy04g01368 Chy-Chr4:20330154 Chy06g00365 Chy-Chr6:2434197 1.27E-60 dispersed
Chy05g00677 Chy-Chr5:8623909 Chy04g01368 Chy-Chr4:20330154 3.78E-26 dispersed
Chy04g01368 Chy-Chr4:20330154 Chy11g01047 Chy-Chr11:14949199 5.38E-59 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17872 PF00249 Myb_DNA-binding 5.70E-08 CL0123 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01368 - - csv:101206445 709.523