Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01397 ATGGATTCCTTTGAGATCCGTCGGGGTCAACCTTCTAGAGGAAGAGACATTGAGCTAGGAGCAAATGCTCCTACTAGTGCAGGGGATCAGGGCATGGGGGATTTCTTCAAAAAGGTCCAAGAGATTGAAAAACAGAATGAGAAGCTGGATAGGCTATTGAGAAAGCTCCAGGATTCACATGAGGAGTCCAAAGCTGTGACCAAAGCTCCAGCAATGAAAGCGATCAAGCAGCGGATGGAAAAAGATGTCGATGAGGTTGGGAAAGTCGCACGTTATGTGAAGACTAAAGTTGAAGAACTCGACAGAGAGAATCTGGCAAATAGGCACAAGCTCGGGTGTGGAAAAGGATCAGGTGTAGATAGATCAAGAACAGCAACTACTCTGGCCTTAAAAAAGAAGTTAAAAGACAAGATGACTGAATTCCAGATTTTACGGGAAAAAATCCATCAAGAGTATCGGGATGTTGTTGAGAGACGGGTTTTCACAGTCACGGGTGCTAGGGCTGATGAAGAGACCATCGAGAAATTAATTGAAACTGGGGATAGTGAACAAATTTTTCAGAAGGCAATTCAAGAACAAGGGCGAGGACAGGTAATGGACACTTTAGCTGAAATTCACGAACGTCACAGTGCAGTTAGAGAACTGGAAAGGAAGTTACTTGAGCTACAGCAGGTATTTCTCGATATGGCAGTATTGGTGGAGGCACAAGGGGATATGCTCGACAATATCGAATCACATGTTACAAGTGCAGTAGATCATGTGCAACAAGGGAATACTGCTCTTCAAAAGGCAAAGAAGCTACAAAAGAACTCTAGGAAATGGATGTGCATTGCCATCATAATCCTTCTAATCATTGTTGTGGTCATAGTAGTGGGAGTTCTTAAGCCATGGAATAATGTCTTTCTCCTCCGCCCTGTTTCTCTCGAAGAACCTCAAATCCCATCGCCTGCCGCCGTCCACTACTCGCCTTTCCTCCGGCTGCTAGGATACCGGTACGTCTCTCTCCATCTCTCAACCCAACTCACTACCTTTCACTTGCATTTCATACCTTGA 1053 44.82 MDSFEIRRGQPSRGRDIELGANAPTSAGDQGMGDFFKKVQEIEKQNEKLDRLLRKLQDSHEESKAVTKAPAMKAIKQRMEKDVDEVGKVARYVKTKVEELDRENLANRHKLGCGKGSGVDRSRTATTLALKKKLKDKMTEFQILREKIHQEYRDVVERRVFTVTGARADEETIEKLIETGDSEQIFQKAIQEQGRGQVMDTLAEIHERHSAVRELERKLLELQQVFLDMAVLVEAQGDMLDNIESHVTSAVDHVQQGNTALQKAKKLQKNSRKWMCIAIIILLIIVVVIVVGVLKPWNNVFLLRPVSLEEPQIPSPAAVHYSPFLRLLGYRYVSLHLSTQLTTFHLHFIP* 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20568837 20595157 - Chy4G081150.1 Chy04g01397 225296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01397 350 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 202 264 IPR000727 -
Chy04g01397 350 PANTHER SYNTAXIN 4 295 IPR045242 -
Chy04g01397 350 PANTHER - 4 295 - -
Chy04g01397 350 Coils Coil 39 66 - -
Chy04g01397 350 SUPERFAMILY t-snare proteins 31 257 IPR010989 GO:0016020|GO:0016192
Chy04g01397 350 ProSitePatterns Syntaxin / epimorphin family signature. 208 247 IPR006012 GO:0005484|GO:0006886|GO:0016020
Chy04g01397 350 Gene3D - 193 295 - -
Chy04g01397 350 Gene3D - 28 156 - -
Chy04g01397 350 CDD SynN 32 189 IPR006011 GO:0016020
Chy04g01397 350 Pfam SNARE domain 238 290 IPR000727 -
Chy04g01397 350 MobiDBLite consensus disorder prediction 1 32 - -
Chy04g01397 350 CDD SNARE_syntaxin1-like 201 263 - -
Chy04g01397 350 Pfam Syntaxin 34 237 IPR006011 GO:0016020
Chy04g01397 350 SMART tSNARE_6 197 264 IPR000727 -
Chy04g01397 350 SMART SynN_4 27 153 IPR006011 GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01397 Chy-Chr4:20568837 Chy11g00597 Chy-Chr11:6820796 1.01E-54 dispersed
Chy04g01397 Chy-Chr4:20568837 Chy08g00980 Chy-Chr8:17055773 5.42E-86 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01397 K08486 - csv:101203075 534.258