Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01408 ATGATGCAACGTCCTGATCATGATCATGATCAACCACAAAGCTCTGAGCTTTACAGATTGCTGGCACAGACCGGAGCCTTCACCCTCGGCGGTCCGGCCTTTCCTCCTCCGCCGGCTTCTACTCAAACCATGTCCAGCTCTTCCTCTTATTACCCTTTGGATAATAATAAGTCTCCCCAAATGGTGGCGGCGCCGTCGCCTCACGACAGAGCTTTGGCGGCTTTGAAGAATCATAAGGAAGCTGAGAAGCGGAGGAGGGAGAGAATTAATTCTCATCTTGATAAGCTTCGTACTCTTCTTCCTTGTAATTCTAAGACGGACAAGGCATCTCTTCTCGCAAAAGTTGTTGAGCGAGTGAAAGAGCTTAAAAACGAGACGTTGGAGATCGCAGAGCTCGAAAGCTTCCCCTCGGAGACCGATGAGATCAGTGTGCTTTCTGGGGAGAAATCGGAGGATGGAAGGCTTGTGTTCAAGGCATCGTTGTGTTGTGAGGACCGCTCTGACCTCATCCCTGACCTTAATGATATTCTTAATTCTCTACACCTCAAAACCCTTAGGGCTGACATTGTCACGGTTGGTGGTCGAATCCGTAACGTCCTGCTTATTGCCGCTAACGACCACCATAACGTCGAGTCTGTTCATTTCCTTCAAAATGCGTTGAAATCTCTTATTGAACGCTCAAATTCTAGCCTTACATCCAAGAGGAGGCGCCTTGTACTTCACCACAAATGA 732 48.36 MMQRPDHDHDQPQSSELYRLLAQTGAFTLGGPAFPPPPASTQTMSSSSSYYPLDNNKSPQMVAAPSPHDRALAALKNHKEAEKRRRERINSHLDKLRTLLPCNSKTDKASLLAKVVERVKELKNETLEIAELESFPSETDEISVLSGEKSEDGRLVFKASLCCEDRSDLIPDLNDILNSLHLKTLRADIVTVGGRIRNVLLIAANDHHNVESVHFLQNALKSLIERSNSSLTSKRRRLVLHHK* 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20737442 20739011 - Chy4G081260.1 Chy04g01408 225307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01408 243 MobiDBLite consensus disorder prediction 40 62 - -
Chy04g01408 243 CDD bHLH_AtAIG1_like 69 144 - -
Chy04g01408 243 Pfam Helix-loop-helix DNA-binding domain 77 122 IPR011598 GO:0046983
Chy04g01408 243 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 73 122 IPR011598 GO:0046983
Chy04g01408 243 PANTHER TRANSCRIPTION FACTOR BHLH30 14 241 IPR045847 GO:0003700|GO:0006355
Chy04g01408 243 PANTHER TRANSCRIPTION FACTOR BHLH106-RELATED 14 241 - -
Chy04g01408 243 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 71 126 IPR036638 GO:0046983
Chy04g01408 243 MobiDBLite consensus disorder prediction 1 64 - -
Chy04g01408 243 SMART finulus 79 128 IPR011598 GO:0046983
Chy04g01408 243 Gene3D - 69 132 IPR036638 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00750 Chy-Chr2:4648794 Chy04g01408 Chy-Chr4:20737442 4.96E-20 dispersed
Chy03g00193 Chy-Chr3:1792542 Chy04g01408 Chy-Chr4:20737442 2.71E-35 dispersed
Chy04g01408 Chy-Chr4:20737442 Chy12g00103 Chy-Chr12:1118448 3.01E-38 dispersed
Chy04g01408 Chy-Chr4:20737442 Chy03g01304 Chy-Chr3:16042531 5.20E-32 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17875 PF00010 HLH 3.80E-12 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01408 - K22484 csv:101220675 447.588