Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01420 ATGGGTTCTGGTAATGGTTTTTATTCCACTAGTGAATTCAATTTGGATGCCAAATGGTTGATTGATCCTAAGCATCTTTTTGTTGGGCCAAAGATTGGGGAAGGTGCCCATGCCAAGATCGTGGCTATCAAAATGGTGGGTAAAGGGGATACTCCTGAGAGGATGGCCAGAAGAGAAGCCCGGTTTGCAAGAGAGGTTGCAATGTTATCCAAATTTATTGGCGCTTGCAAGGAACCTATGATGGTTATTGTGACTGAATTACTCACAGGTGGCACATTGCGCAAATTTCTCTTGAATTTGAGGCCAAGGAGCTTGGAACTTGATGTGGCAATTGGGTTTGCGCTTGATATTGCTCGCGCAATGGAGTGTTTACACTCCCATGGAATTATTCACCGTGACCTTAAACCAGAAAACTTGATATTGACTGCAGACCATAAAACAATTAAGCTTGCTGATTTTGGTTTGGCAAGAGAAGAATCAGTAACAGAGATGATGACTGCAGAAACAGGAACGTATAGATGGATGGCTCCAGAGCTCTATAGTACGGTCACTTTAAAGCATGGAGATAAGAAGCATTATAATCATAAAGTTGATGCCTACAGCTTTGCCATTGTATTGTGGGAGCTTATTCTTAACAGGTTGCCTTTTGAAGGCATGTCGAATTTGCAGGCGGCGTATGCAGCTGCTTTTAAGAACATGAGGCCCAGTGCTGAAAACCTTCCAGAGGACTTAGCCTTAATAGTGACATCATGTTGGAGAGAAGATCCAAATACAAGACCAAACTTCAGCCAGATTATACAGATGCTATTGCAGTCCCTTTCTAGAATATCACCACGATCACCTGTGATCCCACCTCGGATATGTGCTTCTGAAAACGTTGTGATGCCACCCGAATCTCCCGGTACAAATTCCTTGATGGCTGTTAGACATGGCTCAGGGGAAGCCTCACATGGCATGATCGAAGAAACACCAACAAGCTCCTTCTTCTGCTTTAACAAATGTTACTGA 1008 43.45 MGSGNGFYSTSEFNLDAKWLIDPKHLFVGPKIGEGAHAKIVAIKMVGKGDTPERMARREARFAREVAMLSKFIGACKEPMMVIVTELLTGGTLRKFLLNLRPRSLELDVAIGFALDIARAMECLHSHGIIHRDLKPENLILTADHKTIKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLKHGDKKHYNHKVDAYSFAIVLWELILNRLPFEGMSNLQAAYAAAFKNMRPSAENLPEDLALIVTSCWREDPNTRPNFSQIIQMLLQSLSRISPRSPVIPPRICASENVVMPPESPGTNSLMAVRHGSGEASHGMIEETPTSSFFCFNKCY* 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20838762 20841433 - Chy4G081380.1 Chy04g01420 225319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01420 335 SMART serkin_6 26 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy04g01420 335 CDD STKc_MAP3K-like 32 269 - -
Chy04g01420 335 PANTHER SERINE-THREONINE PROTEIN KINASE 1 312 - -
Chy04g01420 335 PANTHER PROTEIN KINASE ATN1 1 312 - -
Chy04g01420 335 SUPERFAMILY Protein kinase-like (PK-like) 17 292 IPR011009 -
Chy04g01420 335 Pfam Protein tyrosine and serine/threonine kinase 37 269 IPR001245 GO:0004672|GO:0006468
Chy04g01420 335 Gene3D Transferase(Phosphotransferase) domain 1 21 279 - -
Chy04g01420 335 PRINTS Tyrosine kinase catalytic domain signature 240 262 IPR001245 GO:0004672|GO:0006468
Chy04g01420 335 PRINTS Tyrosine kinase catalytic domain signature 123 141 IPR001245 GO:0004672|GO:0006468
Chy04g01420 335 PRINTS Tyrosine kinase catalytic domain signature 85 98 IPR001245 GO:0004672|GO:0006468
Chy04g01420 335 PRINTS Tyrosine kinase catalytic domain signature 197 219 IPR001245 GO:0004672|GO:0006468
Chy04g01420 335 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Chy04g01420 335 ProSiteProfiles Protein kinase domain profile. 1 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy04g01420 Chy09g00366 CCT
Chy04g01420 Chy09g00366 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01420 Chy-Chr4:20838762 Chy04g02309 Chy-Chr4:27546469 2.42E-131 dispersed
Chy02g02618 Chy-Chr2:29333915 Chy04g01420 Chy-Chr4:20838762 0 wgd
Chy04g01420 Chy-Chr4:20838762 Chy09g00366 Chy-Chr9:3200310 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71208 PF07714 PK_Tyr_Ser-Thr 9.00E-45 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01420 - - csv:101219563 635.18