Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01430 ATGGCGGGTCTGGAGGAACTCAAGAAGAAACTTACTCCATTGTTTGATGCTGAAAAGGGGCTTTCTATGGACTCCCCAGTGGACCCGTCTGATTCTTATACGTTTTCAGACAATGGGACTGTTAATTTGCTAAGCCGATCGTATGGGGTTTATAATTTCAATGAGCTAGGGTTACAAAAATGCACATCTTGGCTGGCCGATAATTCGGGGAGCAGTGAGAGGACATATCGATGTGCTTCCCGTGAAATGAGGATATTTGGAGCCATCGGTAGTGGTGCTAGCAGTGTTGTTCAGAGAGCTATCCACATTCCTGCTCATCGAATCATGGCACTAAAGAAGATTAATATCTTTGAAAAGGAGAAAAGACAGCAGCTTCTTACTGAAATACGGACACTGTGTGAAGCGCCCTGTTCTGAGGGTCTTGTGGAGTTTCATGGAGCATTTTATACCCCTGATTCTGGGCAAATAAGCATCGCTTTGGAATACATGGATGGAGGGTCATTGGCAGATGTCCTGCGTTTGAAAAAATGTATACCTGAGCCTGTCCTTTCTACTATGTTTCAGAAGCTTCTTCGAGGTTTAAGTTACCTGCATGGAGTAAGACATTTGGTTCACAGAGATATAAAGCCAGCTAATTTACTTGTAAATCTAAAGGGTGAAGCAAAGATTACGGATTTTGGCATAAGTGCTGGCTTAGAGAACTCGATGGCAATGTGTGCTACTTTCGTTGGAACTGTCACATACATGTCATCGGAGCGAATTCGAAACGAGAGCTATTCCTATCCAGCTGACATTTGGAGCCTTGGGCTTGCACTGTTTGAGTGTGGTACTGGTGAATTTCCATATTCAGCTACTGAAGGTCTAGTGAACCTTATGTTACAGATTTTGGATGACCCGTCTCCATCGCCATCAAAACATAAGTTTTCGTCGGAGTTTTGCTCGTTTGTCGATGCCTGCTTGCAAAAAGATGCAGATGCTAGGCCAACAGCAGAGCAGCTGCTTTCACACCCATTTATCAAAAAATATGAGAATGAACAAGTAGACTTGGCAGCATTTGTCCAGAATGTGTTTGATCCAATACAGAGGATGAAGGACTTGGCAGATATGTTGACAATTCATTATTACCTGCTTTTTGATGGACCTGATGACTTCTGGCACCATACAAAAGCTTTATACCATGAAAGCTCAACTTTAAGTTTCTCAGGGAAGCAATTTTCTGGTCCAAATGATATCTTTGGCAAACTATCAGAGATTCGAAGTACGTTAGCAGGAGATTGGCCTCTTGAAAAACTAGTTCACGTTGTCGAAAAACTCCAATGTCGAGCCCACGGTCGGGACGGAGTTGCCATAAGGGTGTCAGGATCCTTCATCCTTGGGAACCAGTTCCTCATATGTGGAGACGGTGTACAAGTAGAGGGACTGCCAAATTTTAAGGATCTCTCCATTGACATGGAAAGCAAGAAAATGGGATCCTTCCGGGAGCAGTTCATCATTGAACCGAGCAATCTCATCGGTCGTTATTTCATTGCTAAACAAGAGCTTTATATAATCCAATAG 1557 43.22 MAGLEELKKKLTPLFDAEKGLSMDSPVDPSDSYTFSDNGTVNLLSRSYGVYNFNELGLQKCTSWLADNSGSSERTYRCASREMRIFGAIGSGASSVVQRAIHIPAHRIMALKKINIFEKEKRQQLLTEIRTLCEAPCSEGLVEFHGAFYTPDSGQISIALEYMDGGSLADVLRLKKCIPEPVLSTMFQKLLRGLSYLHGVRHLVHRDIKPANLLVNLKGEAKITDFGISAGLENSMAMCATFVGTVTYMSSERIRNESYSYPADIWSLGLALFECGTGEFPYSATEGLVNLMLQILDDPSPSPSKHKFSSEFCSFVDACLQKDADARPTAEQLLSHPFIKKYENEQVDLAAFVQNVFDPIQRMKDLADMLTIHYYLLFDGPDDFWHHTKALYHESSTLSFSGKQFSGPNDIFGKLSEIRSTLAGDWPLEKLVHVVEKLQCRAHGRDGVAIRVSGSFILGNQFLICGDGVQVEGLPNFKDLSIDMESKKMGSFREQFIIEPSNLIGRYFIAKQELYIIQ* 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20944512 20949135 - Chy4G081480.1 Chy04g01430 225329

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01430 518 SUPERFAMILY Protein kinase-like (PK-like) 85 370 IPR011009 -
Chy04g01430 518 SUPERFAMILY NTF2-like 364 516 IPR032710 -
Chy04g01430 518 SMART serkin_6 83 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy04g01430 518 Pfam Protein kinase domain 87 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy04g01430 518 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 2 517 - -
Chy04g01430 518 Gene3D Phosphorylase Kinase; domain 1 58 164 - -
Chy04g01430 518 ProSiteProfiles Nuclear transport factor 2 domain profile. 366 516 IPR018222 -
Chy04g01430 518 PANTHER - 2 517 - -
Chy04g01430 518 Gene3D Transferase(Phosphotransferase) domain 1 165 365 - -
Chy04g01430 518 Gene3D - 366 516 - -
Chy04g01430 518 ProSiteProfiles Protein kinase domain profile. 83 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy04g01430 518 CDD PKc_MAPKK_plant_like 84 344 - -
Chy04g01430 518 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
Chy04g01430 518 ProSitePatterns Protein kinases ATP-binding region signature. 89 112 IPR017441 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01430 K20607 MKK3; mitogen-activated protein kinase kinase 3 [EC:2.7.12.2] - csv:101217978 1021.92
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01430 Chy-Chr4:20944512 Chy05g01408 Chy-Chr5:18086590 2.26E-79 dispersed
Chy04g01430 Chy-Chr4:20944512 Chy05g01452 Chy-Chr5:18365650 1.43E-73 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1310 . . . Bda13g01619 . Bpe14g00247 . . Cmo14g00685 . . Cma14g00668 . Car14g00608 . Cpe03g00581 . . . . . . . . Cla10g01325 Cam10g1289 Cec10g1402 Cco10g1377 Clacu10g1380 Cmu10g2151 Cre10g1535 . . . . . . Chy04g01430 Cme04g01845 Blo17g00301 . . . . . . . . . . . . . . . . Bhi11g01602 . . . Hepe02g1784 . . . . . . . . . . Csa03g03971 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy05g01452 CCT 27 351 MAP Kinase Kinase Gene Family AT4G26070 66.3 2.1e-125 445.7
Chy02g01249 CCT 28 309 MAP Kinase Kinase Gene Family AT4G26070 70.9 3.1e-116 415.2
Chy05g01408 . 26 349 MAP Kinase Kinase Gene Family AT4G26070 55.4 3.8e-106 381.7
Chy02g01249 CCT 1 309 MAP Kinase Kinase Gene Family AT4G29810 70.4 1.5e-126 449.5
Chy05g01452 CCT 3 325 MAP Kinase Kinase Gene Family AT4G29810 63.2 1.1e-118 423.3
Chy05g01408 . 10 324 MAP Kinase Kinase Gene Family AT4G29810 59.4 2.1e-109 392.5
Chy04g01430 . 36 518 MAP Kinase Kinase Gene Family AT5G40440 78.9 4.1e-226 780.8
Chy04g00712 . 1 360 MAP Kinase Kinase Gene Family AT1G51660 69.5 2.2e-136 482.3
Chy12g01379 . 49 316 MAP Kinase Kinase Gene Family AT1G51660 55.6 1.3e-83 307.0
Chy04g00712 . 1 360 MAP Kinase Kinase Gene Family AT3G21220 63.7 2.1e-128 455.7
Chy12g01379 . 47 314 MAP Kinase Kinase Gene Family AT3G21220 54.5 3.2e-84 308.9
Chy05g01408 . 1 349 MAP Kinase Kinase Gene Family AT5G56580 83.7 8.1e-168 586.6
Chy05g01452 CCT 1 340 MAP Kinase Kinase Gene Family AT5G56580 55.6 1.5e-108 389.8
Chy02g01249 CCT 7 345 MAP Kinase Kinase Gene Family AT5G56580 55.0 9.8e-105 377.1
Chy12g01379 . 1 316 MAP Kinase Kinase Gene Family AT1G18350 63.6 1.8e-107 386.0
Chy12g01379 . 1 300 MAP Kinase Kinase Gene Family AT3G06230 51.3 1.1e-80 297.0
Chy12g01379 . 1 312 MAP Kinase Kinase Gene Family AT1G73500 65.7 3.8e-113 404.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009007 1 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71210 PF00069 Pkinase 3.90E-58 CL0016 Chy PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g01430 Chy_Chr04 FPKM 9.011427 9.667643 7.475573 9.104373 17.396786 18.006416 20.223303 9.877629 9.104737 9.489698