Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01430 ATGGCGGGTCTGGAGGAACTCAAGAAGAAACTTACTCCATTGTTTGATGCTGAAAAGGGGCTTTCTATGGACTCCCCAGTGGACCCGTCTGATTCTTATACGTTTTCAGACAATGGGACTGTTAATTTGCTAAGCCGATCGTATGGGGTTTATAATTTCAATGAGCTAGGGTTACAAAAATGCACATCTTGGCTGGCCGATAATTCGGGGAGCAGTGAGAGGACATATCGATGTGCTTCCCGTGAAATGAGGATATTTGGAGCCATCGGTAGTGGTGCTAGCAGTGTTGTTCAGAGAGCTATCCACATTCCTGCTCATCGAATCATGGCACTAAAGAAGATTAATATCTTTGAAAAGGAGAAAAGACAGCAGCTTCTTACTGAAATACGGACACTGTGTGAAGCGCCCTGTTCTGAGGGTCTTGTGGAGTTTCATGGAGCATTTTATACCCCTGATTCTGGGCAAATAAGCATCGCTTTGGAATACATGGATGGAGGGTCATTGGCAGATGTCCTGCGTTTGAAAAAATGTATACCTGAGCCTGTCCTTTCTACTATGTTTCAGAAGCTTCTTCGAGGTTTAAGTTACCTGCATGGAGTAAGACATTTGGTTCACAGAGATATAAAGCCAGCTAATTTACTTGTAAATCTAAAGGGTGAAGCAAAGATTACGGATTTTGGCATAAGTGCTGGCTTAGAGAACTCGATGGCAATGTGTGCTACTTTCGTTGGAACTGTCACATACATGTCATCGGAGCGAATTCGAAACGAGAGCTATTCCTATCCAGCTGACATTTGGAGCCTTGGGCTTGCACTGTTTGAGTGTGGTACTGGTGAATTTCCATATTCAGCTACTGAAGGTCTAGTGAACCTTATGTTACAGATTTTGGATGACCCGTCTCCATCGCCATCAAAACATAAGTTTTCGTCGGAGTTTTGCTCGTTTGTCGATGCCTGCTTGCAAAAAGATGCAGATGCTAGGCCAACAGCAGAGCAGCTGCTTTCACACCCATTTATCAAAAAATATGAGAATGAACAAGTAGACTTGGCAGCATTTGTCCAGAATGTGTTTGATCCAATACAGAGGATGAAGGACTTGGCAGATATGTTGACAATTCATTATTACCTGCTTTTTGATGGACCTGATGACTTCTGGCACCATACAAAAGCTTTATACCATGAAAGCTCAACTTTAAGTTTCTCAGGGAAGCAATTTTCTGGTCCAAATGATATCTTTGGCAAACTATCAGAGATTCGAAGTACGTTAGCAGGAGATTGGCCTCTTGAAAAACTAGTTCACGTTGTCGAAAAACTCCAATGTCGAGCCCACGGTCGGGACGGAGTTGCCATAAGGGTGTCAGGATCCTTCATCCTTGGGAACCAGTTCCTCATATGTGGAGACGGTGTACAAGTAGAGGGACTGCCAAATTTTAAGGATCTCTCCATTGACATGGAAAGCAAGAAAATGGGATCCTTCCGGGAGCAGTTCATCATTGAACCGAGCAATCTCATCGGTCGTTATTTCATTGCTAAACAAGAGCTTTATATAATCCAATAG 1557 43.22 MAGLEELKKKLTPLFDAEKGLSMDSPVDPSDSYTFSDNGTVNLLSRSYGVYNFNELGLQKCTSWLADNSGSSERTYRCASREMRIFGAIGSGASSVVQRAIHIPAHRIMALKKINIFEKEKRQQLLTEIRTLCEAPCSEGLVEFHGAFYTPDSGQISIALEYMDGGSLADVLRLKKCIPEPVLSTMFQKLLRGLSYLHGVRHLVHRDIKPANLLVNLKGEAKITDFGISAGLENSMAMCATFVGTVTYMSSERIRNESYSYPADIWSLGLALFECGTGEFPYSATEGLVNLMLQILDDPSPSPSKHKFSSEFCSFVDACLQKDADARPTAEQLLSHPFIKKYENEQVDLAAFVQNVFDPIQRMKDLADMLTIHYYLLFDGPDDFWHHTKALYHESSTLSFSGKQFSGPNDIFGKLSEIRSTLAGDWPLEKLVHVVEKLQCRAHGRDGVAIRVSGSFILGNQFLICGDGVQVEGLPNFKDLSIDMESKKMGSFREQFIIEPSNLIGRYFIAKQELYIIQ* 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20944512 20949135 - Chy4G081480.1 Chy04g01430 225329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01430 518 SUPERFAMILY Protein kinase-like (PK-like) 85 370 IPR011009 -
Chy04g01430 518 SUPERFAMILY NTF2-like 364 516 IPR032710 -
Chy04g01430 518 SMART serkin_6 83 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy04g01430 518 Pfam Protein kinase domain 87 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy04g01430 518 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 2 517 - -
Chy04g01430 518 Gene3D Phosphorylase Kinase; domain 1 58 164 - -
Chy04g01430 518 ProSiteProfiles Nuclear transport factor 2 domain profile. 366 516 IPR018222 -
Chy04g01430 518 PANTHER - 2 517 - -
Chy04g01430 518 Gene3D Transferase(Phosphotransferase) domain 1 165 365 - -
Chy04g01430 518 Gene3D - 366 516 - -
Chy04g01430 518 ProSiteProfiles Protein kinase domain profile. 83 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy04g01430 518 CDD PKc_MAPKK_plant_like 84 344 - -
Chy04g01430 518 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
Chy04g01430 518 ProSitePatterns Protein kinases ATP-binding region signature. 89 112 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01430 Chy-Chr4:20944512 Chy05g01408 Chy-Chr5:18086590 2.26E-79 dispersed
Chy04g01430 Chy-Chr4:20944512 Chy05g01452 Chy-Chr5:18365650 1.43E-73 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71210 PF00069 Pkinase 3.90E-58 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01430 K20607 - csv:101217978 1021.92