Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01431 ATGGTAAGAAAGACGGCTCTGACAGACCCAAAAGAAAGGAAGATGTCTTCTTCCACCTACTCTAATTCTCCTTGTGCAGCCTGCAAGTTCCTACGTCGAAAATGCCTACCAGATTGTGTTTTTGCGCCATATTTTCCGCCCGAAGAGCCTCAAAAGTTTGCCAATGTTCACAAGATCTTTGGTGCCAGTAATGTCAGCAAACTGTTGAATGAAGTCCAGCCGCATCAGCGGGAGGATGCTGTGAACTCGCTCGCCTACGAGGCCGAGGCAAGGATGAAAGACCCTGTGTATGGCTGCGTTGGCGCCATCTCTATACTCCAAAGGCAAGTCATCAAGCTCCAAAAAGAGCTCGATGCTACTAACGCCGACCTCATTCGCTATGCCTGCAGTGAAATCCCAGCCCCATCTCCGTCTTCATCGTCGCAATATGCTCGAAGGTCGTCATCAACAAGCCACGAGGGAAGCTCGTCTATTTCTAGCTATGGTCATTACTATACTGGTCTCTACTTTTCTCCATGGAGTAACAACAATAATGGCCCTTGTGGAGATGGCCATGACAAAGGAGAATACAAGTAA 576 48.26 MVRKTALTDPKERKMSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSEIPAPSPSSSSQYARRSSSTSHEGSSSISSYGHYYTGLYFSPWSNNNNGPCGDGHDKGEYK* 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20958581 20959551 + Chy4G081490.1 Chy04g01431 225330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01431 191 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 15 178 - -
Chy04g01431 191 PANTHER LOB DOMAIN-CONTAINING PROTEIN 25 15 178 - -
Chy04g01431 191 Pfam Lateral organ boundaries (LOB) domain 24 120 IPR004883 -
Chy04g01431 191 ProSiteProfiles LOB domain profile. 23 124 IPR004883 -
Chy04g01431 191 MobiDBLite consensus disorder prediction 1 22 - -
Chy04g01431 191 MobiDBLite consensus disorder prediction 172 191 - -
Chy04g01431 191 Coils Coil 103 123 - -
Chy04g01431 191 MobiDBLite consensus disorder prediction 134 158 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01431 Chy-Chr4:20958581 Chy05g00814 Chy-Chr5:11625989 3.28E-58 dispersed
Chy10g01149 Chy-Chr10:16407999 Chy04g01431 Chy-Chr4:20958581 3.26E-10 dispersed
Chy02g00112 Chy-Chr2:785712 Chy04g01431 Chy-Chr4:20958581 1.18E-38 transposed
Chy03g00195 Chy-Chr3:1805672 Chy04g01431 Chy-Chr4:20958581 7.56E-49 transposed
Chy12g00766 Chy-Chr12:11758250 Chy04g01431 Chy-Chr4:20958581 7.02E-06 transposed
Chy12g01247 Chy-Chr12:17109983 Chy04g01431 Chy-Chr4:20958581 8.44E-55 wgd
Chy02g02604 Chy-Chr2:29255861 Chy04g01431 Chy-Chr4:20958581 2.64E-73 wgd
Chy04g01431 Chy-Chr4:20958581 Chy09g00359 Chy-Chr9:3119388 1.24E-17 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17876 PF03195 LOB 3.00E-42 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01431 - - csv:101219482 338.961