Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy04g01431 | ATGGTAAGAAAGACGGCTCTGACAGACCCAAAAGAAAGGAAGATGTCTTCTTCCACCTACTCTAATTCTCCTTGTGCAGCCTGCAAGTTCCTACGTCGAAAATGCCTACCAGATTGTGTTTTTGCGCCATATTTTCCGCCCGAAGAGCCTCAAAAGTTTGCCAATGTTCACAAGATCTTTGGTGCCAGTAATGTCAGCAAACTGTTGAATGAAGTCCAGCCGCATCAGCGGGAGGATGCTGTGAACTCGCTCGCCTACGAGGCCGAGGCAAGGATGAAAGACCCTGTGTATGGCTGCGTTGGCGCCATCTCTATACTCCAAAGGCAAGTCATCAAGCTCCAAAAAGAGCTCGATGCTACTAACGCCGACCTCATTCGCTATGCCTGCAGTGAAATCCCAGCCCCATCTCCGTCTTCATCGTCGCAATATGCTCGAAGGTCGTCATCAACAAGCCACGAGGGAAGCTCGTCTATTTCTAGCTATGGTCATTACTATACTGGTCTCTACTTTTCTCCATGGAGTAACAACAATAATGGCCCTTGTGGAGATGGCCATGACAAAGGAGAATACAAGTAA | 576 | 48.26 | MVRKTALTDPKERKMSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSEIPAPSPSSSSQYARRSSSTSHEGSSSISSYGHYYTGLYFSPWSNNNNGPCGDGHDKGEYK* | 192 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 20958581 | 20959551 | + | Chy4G081490.1 | Chy04g01431 | 225330 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy04g01431 | 191 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 15 | 178 | - | - | |
Chy04g01431 | 191 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 25 | 15 | 178 | - | - | |
Chy04g01431 | 191 | Pfam | Lateral organ boundaries (LOB) domain | 24 | 120 | IPR004883 | - | |
Chy04g01431 | 191 | ProSiteProfiles | LOB domain profile. | 23 | 124 | IPR004883 | - | |
Chy04g01431 | 191 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Chy04g01431 | 191 | MobiDBLite | consensus disorder prediction | 172 | 191 | - | - | |
Chy04g01431 | 191 | Coils | Coil | 103 | 123 | - | - | |
Chy04g01431 | 191 | MobiDBLite | consensus disorder prediction | 134 | 158 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy04g01431 | Chy-Chr4:20958581 | Chy05g00814 | Chy-Chr5:11625989 | 3.28E-58 | dispersed | |
Chy10g01149 | Chy-Chr10:16407999 | Chy04g01431 | Chy-Chr4:20958581 | 3.26E-10 | dispersed | |
Chy02g00112 | Chy-Chr2:785712 | Chy04g01431 | Chy-Chr4:20958581 | 1.18E-38 | transposed | |
Chy03g00195 | Chy-Chr3:1805672 | Chy04g01431 | Chy-Chr4:20958581 | 7.56E-49 | transposed | |
Chy12g00766 | Chy-Chr12:11758250 | Chy04g01431 | Chy-Chr4:20958581 | 7.02E-06 | transposed | |
Chy12g01247 | Chy-Chr12:17109983 | Chy04g01431 | Chy-Chr4:20958581 | 8.44E-55 | wgd | |
Chy02g02604 | Chy-Chr2:29255861 | Chy04g01431 | Chy-Chr4:20958581 | 2.64E-73 | wgd | |
Chy04g01431 | Chy-Chr4:20958581 | Chy09g00359 | Chy-Chr9:3119388 | 1.24E-17 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
17876 | PF03195 | LOB | 3.00E-42 | No_clan | Chy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy04g01431 | - | - | csv:101219482 | 338.961 |