Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01457 ATGGCGGTTCTGCAGCTTCCTTGTGTGAGGATTATTGATTATTCATCTTCGCCATTGTTGAGAGGAAGTAAATCGTCGTTGTTTTGGGGAAGAGATTTATGTTTTGGAAATGGAGGTGTTAGGGATGGTCCGAGAGCGAGAGCTTCATTCAATGGTCGACTTGTTAAGGTTTTCGCCATGTCGGATTCTTCTTCTTCGTCCTTTAAGATGAATCTCAATGAATACATGGTTACTCTTGAGAAACCGCTCGGCATTCGGTTTGCGATTTCCGTTGATGGAAGAATCTTCGTTCATTCGCTTAAGAAAGGGGGTAATGCTGAGAAGTCGAGAATAATCATGGTGGGGGACACTTTAAAGAAGGCAAGCGATTCATCAGGCGTCAATCTCATTGAGATTAAAGACTTTGGTGATACACAGATGATGCTGATGGAGAAAACAGGATCTTTTAGCCTGGTTCTTGAAAGACCTTTTTCTCCTTTTCCTGTTCAACAGCTTCTACTTTCAAACGATTTAGATATTTTATTTAATAGAGGTCGAGTGCCTATTGCTACTTGGAAGAAAGAAATTTTGGCATCAAATTTGCAAACATCTGATGAAAGCAGTGGGAACTCTGGCTTTGCGACTTTCTCCTCTAAGTTTTTAACATCAGACGGTTGGAAACTTCTTAGAGATCAAAATGAAGATGTAAAATCACACATACAGAGAAACATTCTCACACCTCAAATCGGCCAACTTGTTGGTATATTTACTGAAGATGAGCCTGGAGATGGAGAATGGGCTCATGGGAGCTTCCCCCTAGATGAATATGTCAAGGCACTAGAACGGTCTAAAGGGGAGCTGTATTATGATCACTCTCGTGGTATGAGCTATAGTAAGATCACGGAGCAAATCTATGTGGGGTCATGTATACAGACGGAAGCAGATGTTGTGGCTTTGTCAAATAACGTGGGAGTCACCGCTGTACTGAATTTTCAAAGTGCAACTGAGGCAGAAAACTGGGGGATTAATGCCAAGTTAATCAATGAGTCGTGCCAAAAATTTGATATTCTAATGATCAGCTATCCTATCAGAGAAGGAGATTCTTATGATTTGAGGAAAAAACTACCATTCTGTGTGGGTCTACTTCTACGACTGTTAAAAAAGAACCATCGAGTTTTTATAACTTGTACCTCTGGTTTTGATCGATCTCCAGCCAGTGTGATTGCATATCTACACTGGATGACCGATACTTCTCTTCATGCAGCTTATAATTTTATCACCAGTTTGCATTCCTGCAAACCTGACAGGCCTGCTATCGCTTGGGCCACCTGGGATCTCATAGCAATGGTGGAAAATGGAAGGCATGATGGACCTCCCACTCATGCCGTCACCTTCGTATGGAATGGACAAGAGGGGGAGGATGTAAATTTGGTTGGAGATTTTACTGGTAACTGGAAAGAACCCGTCAAAGCTAGTCACAAGGGTGGACCTAGATATGAAGTAGAAATGAAACTTCCTCAGGGAAAGTATTACTACAAGTACATCACAAATGGTCAGTGGAGGCACTCAACATCTTCACCTGCTGAAAGAGACGACAGGGGGAATGTCAACAATGTAATAGTCATCGGTGACACTGCCAGTGTTAGGCCTTCAGTTCAGCCGCAAAAGAGAGATGCAAATATCGTGAAGGTAATTGAAAGACCATTGACAGAAAATGAGCGGTTTATGTTGGCGAAAGCAGCTCGGTGTGTTGCATTTTCAGTATGTCCAATTAGACTAACTCCCAAGTAG 1770 42.2 MAVLQLPCVRIIDYSSSPLLRGSKSSLFWGRDLCFGNGGVRDGPRARASFNGRLVKVFAMSDSSSSSFKMNLNEYMVTLEKPLGIRFAISVDGRIFVHSLKKGGNAEKSRIIMVGDTLKKASDSSGVNLIEIKDFGDTQMMLMEKTGSFSLVLERPFSPFPVQQLLLSNDLDILFNRGRVPIATWKKEILASNLQTSDESSGNSGFATFSSKFLTSDGWKLLRDQNEDVKSHIQRNILTPQIGQLVGIFTEDEPGDGEWAHGSFPLDEYVKALERSKGELYYDHSRGMSYSKITEQIYVGSCIQTEADVVALSNNVGVTAVLNFQSATEAENWGINAKLINESCQKFDILMISYPIREGDSYDLRKKLPFCVGLLLRLLKKNHRVFITCTSGFDRSPASVIAYLHWMTDTSLHAAYNFITSLHSCKPDRPAIAWATWDLIAMVENGRHDGPPTHAVTFVWNGQEGEDVNLVGDFTGNWKEPVKASHKGGPRYEVEMKLPQGKYYYKYITNGQWRHSTSSPAERDDRGNVNNVIVIGDTASVRPSVQPQKRDANIVKVIERPLTENERFMLAKAARCVAFSVCPIRLTPK* 590
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21205710 21210589 + Chy4G081750.1 Chy04g01457 225356

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01457 589 Pfam Glycogen recognition site of AMP-activated protein kinase 456 537 IPR032640 -
Chy04g01457 589 CDD DSP_laforin-like 288 434 IPR045204 GO:0019203|GO:0046838
Chy04g01457 589 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 27 588 - -
Chy04g01457 589 SUPERFAMILY PDZ domain-like 58 162 IPR036034 GO:0005515
Chy04g01457 589 ProSiteProfiles PDZ domain profile. 76 157 IPR001478 GO:0005515
Chy04g01457 589 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 27 588 IPR030066 GO:0005983
Chy04g01457 589 CDD E_set_AMPKbeta_like_N 456 535 - -
Chy04g01457 589 Pfam Dual specificity phosphatase, catalytic domain 298 421 IPR000340 GO:0008138|GO:0016311
Chy04g01457 589 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 281 427 IPR029021 -
Chy04g01457 589 Gene3D Immunoglobulins 443 539 IPR013783 -
Chy04g01457 589 Gene3D Protein tyrosine phosphatase superfamily 282 547 IPR029021 -
Chy04g01457 589 SUPERFAMILY E set domains 453 536 IPR014756 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01457 - - - csv:101214241 1159.82
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01457 Chy-Chr4:21205710 Chy10g01271 Chy-Chr10:17246198 1.19E-29 dispersed
Chy04g01457 Chy-Chr4:21205710 Chy02g00468 Chy-Chr2:2898854 7.59E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1353 . . Bda01g01276 . . . . . . Cmo11g01690 Cma11g01431 . Car11g01375 . . . . . . . . . . . Cla10g01351 Cam10g1259 Cec10g1431 Cco10g1406 Clacu10g1409 Cmu10g2179 Cre10g1562 Cone11ag0116 Cone18ag1361 . . . . Chy04g01457 Cme04g01886 . Blo18g00335 . . . . Bma01g00978 . . . . . . . . . . Bhi11g01648 . . . Hepe02g1823 . . . . . . . . . . Csa03g03940 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy02g00892 . 33 608 Protein tyrosine phosphatase (PTP) family AT3G50110 62.4 2.6e-193 672.2
Chy01g00080 . 6 613 Protein tyrosine phosphatase (PTP) family AT3G50110 57.3 1.2e-182 636.7
Chy04g01571 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 66.2 3.3e-157 551.6
Chy03g00887 . 1 860 Protein tyrosine phosphatase (PTP) family AT3G10550 68.5 0.0e+00 1177.5
Chy03g00887 . 1 860 Protein tyrosine phosphatase (PTP) family AT5G04540 65.7 0.0e+00 1114.0
Chy02g02115 . 51 1308 Protein tyrosine phosphatase (PTP) family AT5G58160 53.4 4.6e-306 1047.7
Chy02g02475 CCT 1 376 Protein tyrosine phosphatase (PTP) family AT5G58160 63.3 4.8e-138 489.6
Chy01g01195 . 4 277 Protein tyrosine phosphatase (PTP) family AT1G71860 67.3 2.4e-108 389.0
Chy02g02701 . 11 908 Protein tyrosine phosphatase (PTP) family AT5G23720 64.2 0.0e+00 1075.5
Chy11g01429 . 33 171 Protein tyrosine phosphatase (PTP) family AT3G06110 57.9 8.0e-41 163.7
Chy05g00525 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 76.9 6.0e-71 263.8
Chy10g01271 . 113 393 Protein tyrosine phosphatase (PTP) family AT3G52180 69.0 6.4e-115 410.6
Chy10g00338 . 29 283 Protein tyrosine phosphatase (PTP) family AT3G10940 74.0 1.9e-111 399.1
Chy04g01457 . 141 589 Protein tyrosine phosphatase (PTP) family AT3G01510 71.9 2.0e-203 705.3
Chy11g00950 . 2 214 Protein tyrosine phosphatase (PTP) family AT2G32960 57.5 5.8e-75 277.7
Chy05g00519 . 43 240 Protein tyrosine phosphatase (PTP) family AT2G32960 62.9 8.2e-69 257.3
Chy02g01674 . 3 170 Protein tyrosine phosphatase (PTP) family AT2G32960 52.0 1.8e-55 213.0
Chy06g02072 . 14 348 Protein tyrosine phosphatase (PTP) family AT2G35680 55.6 1.3e-101 366.7
Chy05g01416 . 18 264 Protein tyrosine phosphatase (PTP) family AT2G35680 54.9 1.6e-80 296.6
Chy05g01416 . 28 202 Protein tyrosine phosphatase (PTP) family AT5G56610 52.6 7.8e-45 177.2
Chy06g02072 . 51 226 Protein tyrosine phosphatase (PTP) family AT5G56610 51.7 1.0e-44 176.8
Chy11g00950 . 44 214 Protein tyrosine phosphatase (PTP) family AT4G03960 76.6 2.5e-78 288.5
Chy05g00519 . 41 239 Protein tyrosine phosphatase (PTP) family AT4G03960 61.3 2.2e-66 248.8
Chy02g01674 . 13 170 Protein tyrosine phosphatase (PTP) family AT4G03960 62.0 5.0e-58 221.1
Chy02g01674 . 1 201 Protein tyrosine phosphatase (PTP) family AT3G02800 68.6 8.1e-80 293.5
Chy11g00950 . 44 208 Protein tyrosine phosphatase (PTP) family AT3G02800 60.6 4.1e-55 211.5
Chy10g00579 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 64.1 2.2e-61 234.2
Chy04g01571 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 66.2 3.3e-157 551.6
Chy01g00080 . 33 613 Protein tyrosine phosphatase (PTP) family AT3G19420 65.8 2.4e-220 761.9
Chy02g00892 . 31 608 Protein tyrosine phosphatase (PTP) family AT3G19420 61.9 4.6e-195 677.9
Chy02g00892 . 33 608 Protein tyrosine phosphatase (PTP) family AT3G50110 62.4 2.6e-193 672.2
Chy01g00080 . 6 613 Protein tyrosine phosphatase (PTP) family AT3G50110 57.3 1.2e-182 636.7
Chy02g02115 . 51 1308 Protein tyrosine phosphatase (PTP) family AT5G58160 53.4 4.6e-306 1047.7
Chy02g02475 CCT 1 376 Protein tyrosine phosphatase (PTP) family AT5G58160 63.3 4.8e-138 489.6
Chy03g00887 . 1 860 Protein tyrosine phosphatase (PTP) family AT3G10550 68.5 0.0e+00 1177.5
Chy03g00887 . 1 860 Protein tyrosine phosphatase (PTP) family AT5G04540 65.7 0.0e+00 1114.0
Chy11g00890 . 17 244 Protein tyrosine phosphatase (PTP) family AT3G44620 58.2 5.2e-71 264.6
Chy06g02132 . 27 311 Protein tyrosine phosphatase (PTP) family AT2G35320 64.2 2.5e-109 392.1
Chy08g00661 . 1 673 Protein tyrosine phosphatase (PTP) family AT3G09100 68.7 9.0e-277 949.5
Chy08g00661 . 5 673 Protein tyrosine phosphatase (PTP) family AT5G01290 65.5 3.4e-252 867.8
Chy08g00661 . 86 673 Protein tyrosine phosphatase (PTP) family AT5G28210 56.4 4.9e-184 641.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008517 1 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g01457 Chy_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.524796 0.208667 0.0