Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01457 ATGGCGGTTCTGCAGCTTCCTTGTGTGAGGATTATTGATTATTCATCTTCGCCATTGTTGAGAGGAAGTAAATCGTCGTTGTTTTGGGGAAGAGATTTATGTTTTGGAAATGGAGGTGTTAGGGATGGTCCGAGAGCGAGAGCTTCATTCAATGGTCGACTTGTTAAGGTTTTCGCCATGTCGGATTCTTCTTCTTCGTCCTTTAAGATGAATCTCAATGAATACATGGTTACTCTTGAGAAACCGCTCGGCATTCGGTTTGCGATTTCCGTTGATGGAAGAATCTTCGTTCATTCGCTTAAGAAAGGGGGTAATGCTGAGAAGTCGAGAATAATCATGGTGGGGGACACTTTAAAGAAGGCAAGCGATTCATCAGGCGTCAATCTCATTGAGATTAAAGACTTTGGTGATACACAGATGATGCTGATGGAGAAAACAGGATCTTTTAGCCTGGTTCTTGAAAGACCTTTTTCTCCTTTTCCTGTTCAACAGCTTCTACTTTCAAACGATTTAGATATTTTATTTAATAGAGGTCGAGTGCCTATTGCTACTTGGAAGAAAGAAATTTTGGCATCAAATTTGCAAACATCTGATGAAAGCAGTGGGAACTCTGGCTTTGCGACTTTCTCCTCTAAGTTTTTAACATCAGACGGTTGGAAACTTCTTAGAGATCAAAATGAAGATGTAAAATCACACATACAGAGAAACATTCTCACACCTCAAATCGGCCAACTTGTTGGTATATTTACTGAAGATGAGCCTGGAGATGGAGAATGGGCTCATGGGAGCTTCCCCCTAGATGAATATGTCAAGGCACTAGAACGGTCTAAAGGGGAGCTGTATTATGATCACTCTCGTGGTATGAGCTATAGTAAGATCACGGAGCAAATCTATGTGGGGTCATGTATACAGACGGAAGCAGATGTTGTGGCTTTGTCAAATAACGTGGGAGTCACCGCTGTACTGAATTTTCAAAGTGCAACTGAGGCAGAAAACTGGGGGATTAATGCCAAGTTAATCAATGAGTCGTGCCAAAAATTTGATATTCTAATGATCAGCTATCCTATCAGAGAAGGAGATTCTTATGATTTGAGGAAAAAACTACCATTCTGTGTGGGTCTACTTCTACGACTGTTAAAAAAGAACCATCGAGTTTTTATAACTTGTACCTCTGGTTTTGATCGATCTCCAGCCAGTGTGATTGCATATCTACACTGGATGACCGATACTTCTCTTCATGCAGCTTATAATTTTATCACCAGTTTGCATTCCTGCAAACCTGACAGGCCTGCTATCGCTTGGGCCACCTGGGATCTCATAGCAATGGTGGAAAATGGAAGGCATGATGGACCTCCCACTCATGCCGTCACCTTCGTATGGAATGGACAAGAGGGGGAGGATGTAAATTTGGTTGGAGATTTTACTGGTAACTGGAAAGAACCCGTCAAAGCTAGTCACAAGGGTGGACCTAGATATGAAGTAGAAATGAAACTTCCTCAGGGAAAGTATTACTACAAGTACATCACAAATGGTCAGTGGAGGCACTCAACATCTTCACCTGCTGAAAGAGACGACAGGGGGAATGTCAACAATGTAATAGTCATCGGTGACACTGCCAGTGTTAGGCCTTCAGTTCAGCCGCAAAAGAGAGATGCAAATATCGTGAAGGTAATTGAAAGACCATTGACAGAAAATGAGCGGTTTATGTTGGCGAAAGCAGCTCGGTGTGTTGCATTTTCAGTATGTCCAATTAGACTAACTCCCAAGTAG 1770 42.2 MAVLQLPCVRIIDYSSSPLLRGSKSSLFWGRDLCFGNGGVRDGPRARASFNGRLVKVFAMSDSSSSSFKMNLNEYMVTLEKPLGIRFAISVDGRIFVHSLKKGGNAEKSRIIMVGDTLKKASDSSGVNLIEIKDFGDTQMMLMEKTGSFSLVLERPFSPFPVQQLLLSNDLDILFNRGRVPIATWKKEILASNLQTSDESSGNSGFATFSSKFLTSDGWKLLRDQNEDVKSHIQRNILTPQIGQLVGIFTEDEPGDGEWAHGSFPLDEYVKALERSKGELYYDHSRGMSYSKITEQIYVGSCIQTEADVVALSNNVGVTAVLNFQSATEAENWGINAKLINESCQKFDILMISYPIREGDSYDLRKKLPFCVGLLLRLLKKNHRVFITCTSGFDRSPASVIAYLHWMTDTSLHAAYNFITSLHSCKPDRPAIAWATWDLIAMVENGRHDGPPTHAVTFVWNGQEGEDVNLVGDFTGNWKEPVKASHKGGPRYEVEMKLPQGKYYYKYITNGQWRHSTSSPAERDDRGNVNNVIVIGDTASVRPSVQPQKRDANIVKVIERPLTENERFMLAKAARCVAFSVCPIRLTPK* 590
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21205710 21210589 + Chy4G081750.1 Chy04g01457 225356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01457 589 Pfam Glycogen recognition site of AMP-activated protein kinase 456 537 IPR032640 -
Chy04g01457 589 CDD DSP_laforin-like 288 434 IPR045204 GO:0019203|GO:0046838
Chy04g01457 589 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 27 588 - -
Chy04g01457 589 SUPERFAMILY PDZ domain-like 58 162 IPR036034 GO:0005515
Chy04g01457 589 ProSiteProfiles PDZ domain profile. 76 157 IPR001478 GO:0005515
Chy04g01457 589 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 27 588 IPR030066 GO:0005983
Chy04g01457 589 CDD E_set_AMPKbeta_like_N 456 535 - -
Chy04g01457 589 Pfam Dual specificity phosphatase, catalytic domain 298 421 IPR000340 GO:0008138|GO:0016311
Chy04g01457 589 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 281 427 IPR029021 -
Chy04g01457 589 Gene3D Immunoglobulins 443 539 IPR013783 -
Chy04g01457 589 Gene3D Protein tyrosine phosphatase superfamily 282 547 IPR029021 -
Chy04g01457 589 SUPERFAMILY E set domains 453 536 IPR014756 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01457 Chy-Chr4:21205710 Chy10g01271 Chy-Chr10:17246198 1.19E-29 dispersed
Chy04g01457 Chy-Chr4:21205710 Chy02g00468 Chy-Chr2:2898854 7.59E-06 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01457 - - csv:101214241 1159.82