Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01468 ATGGAATCTGGTCGGTTCTTGTTTAATCCGCCACCTTACGGCGGGAACATGCTTTACCTTGGCGGAGCCGGCGGCGATCCTTGTCTGCGAGGAGGAAGAACAATGATGAGCATGACCATGAATGAAAGTCCAAAAGGGAGGCCATTTTTTAGATCCCCCGATGATCTTTACGATGATGAATATTATGATGAGTTTTACCCTGAGAAGAAGCGACGTCTCACCCACGACCAGGTTCAAATGCTGGAGAAGAACTTTGAGGAAGAGAACAAACTGGAGCCAGAGAGAAAATCCCAACTGGCCAAGAAGCTAGGGCTGCAACCGAGGCAGGTGGCTGTGTGGTTCCAGAATCGTCGAGCTCGGTGGAAGACAAAGCAACTTGAAAGGGACTACGATGTTCTTAAAGCTTCTTATGATTTGCTTGTGTCCAACTATGACTCAATAGTCAAGGAGAATGCAGTTCTTAAATCTGAGGTGGCCTCGTTAACTGAGAAATGTCTAGCTAAAGAGCTAGGTGGAGGAGAAGCAACAATTCCATCTATAACATCAGAGCTTCTTCTGGCAAACATCACCAATATCTCCGTCCCACACTCCGGCAGAAAGGCTGAAGATCGTCTTAGTTCAGGGAGTGATAGCAGTGCAGTGATCGACGATAATTGTCCACAGCTCATCGACAGTGGTGATTCGTACTTCCCCAACATCGAGTATCCGCAATGTGCAAATCTGCCTAACGGGTTGCAAATGGAAGACAATGATACAAACGACAGTAGCAACTACTTGTTCTCGGATATGTTTGCAGCAACAAACCAACAGAATCAAGAGGGGAGGCCTCCAGCTTGGTGGGCGTGGCCTTAG 852 47.54 MESGRFLFNPPPYGGNMLYLGGAGGDPCLRGGRTMMSMTMNESPKGRPFFRSPDDLYDDEYYDEFYPEKKRRLTHDQVQMLEKNFEEENKLEPERKSQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKASYDLLVSNYDSIVKENAVLKSEVASLTEKCLAKELGGGEATIPSITSELLLANITNISVPHSGRKAEDRLSSGSDSSAVIDDNCPQLIDSGDSYFPNIEYPQCANLPNGLQMEDNDTNDSSNYLFSDMFAATNQQNQEGRPPAWWAWP* 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21334913 21337938 + Chy4G081860.1 Chy04g01468 225367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01468 283 PRINTS Lambda-repressor HTH signature 104 120 IPR000047 GO:0003677
Chy04g01468 283 PRINTS Lambda-repressor HTH signature 95 104 IPR000047 GO:0003677
Chy04g01468 283 Gene3D - 67 130 - -
Chy04g01468 283 Pfam Homeodomain 69 122 IPR001356 GO:0003677
Chy04g01468 283 ProSiteProfiles 'Homeobox' domain profile. 64 124 IPR001356 GO:0003677
Chy04g01468 283 Pfam Homeobox associated leucine zipper 124 164 IPR003106 GO:0006355|GO:0043565
Chy04g01468 283 SMART HOX_1 67 128 IPR001356 GO:0003677
Chy04g01468 283 CDD homeodomain 69 125 IPR001356 GO:0003677
Chy04g01468 283 SUPERFAMILY Homeodomain-like 65 126 IPR009057 -
Chy04g01468 283 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT5 1 249 - -
Chy04g01468 283 ProSitePatterns 'Homeobox' domain signature. 99 122 IPR017970 GO:0000981|GO:0006355
Chy04g01468 283 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 249 IPR045224 GO:0003700
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy04g01468 Chy09g00328 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01468 Chy-Chr4:21334913 Chy12g01323 Chy-Chr12:17588638 4.31E-45 dispersed
Chy06g00067 Chy-Chr6:470447 Chy04g01468 Chy-Chr4:21334913 3.06E-29 dispersed
Chy04g01468 Chy-Chr4:21334913 Chy09g00328 Chy-Chr9:2838024 9.97E-85 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17878 PF00046 Homeodomain 4.50E-18 CL0123 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01468 K09338 - csv:101212142 533.487