Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01471 ATGGATAGAATCATCCAGTCGCCGGCGTCCAAGTTCCGCCCCTTTCGGCGACAGCTAATCGGCTCGTCCTCCGATTCGGCCACCGGCAAGGCGGCCGCTACGGACGAACACCCAAATTACATCCTCCTCCGCTACCAAATCCTCGACCCTGATAGCGACATTGTAGCACAATGGAACCGCGTGTTCCTAGTGACATGCCTGATCGCTCTGTTCATCGATCCGCTGTATTTCTACACGTCGTCTGTGGGAGGGCCGGCATGCCTGACCTCGGAGGTGAATCTGGGAGTGGCGATCACGTTCTTCAGAACGGTAACCGATCTGTTCTTCTTGTTGCACATGGTGTTGAAGTTTCGAACGGCGTATGTTGCTCCAAGCTCTAGGGTTTTTGGAAGAGGAGAGCTGGTTATGGATGCCAAAGCCATTGCTACGCGCTATTTGAAGTCTGATTTTGTGATTGATCTTGCCGCTACTCTCCCCCTCCCACAAATAGTGATGTGGTTAGTGATTCCAATAACAAGAAACTCAAGAGTGGATCATGCCAACAACACAATTGCTCTTCTTGTTCTTCTTCAATACGTCCCACGGTTGTTCCTCATCTTCCCTCTCAACCAACGCATCATCAAAACTACTGGTGTTGTTGCCAAAACTGCGTGGGCTGGTGCTGCCTACAATCTCATCCTCTACATGCTTGCCAGTCATGTTTTGGGATCTACATGGTATTTGTTGTCCATAGGGAGACAGTTTTCATGTTGGAAATCAGAATGTGCAAAGGAAAATGCCTCCCAAGTTCTAACATGCCTTCCCATCTTCTTGGATTGTACCAGTTTGAATGACACTTTAAGACAATATTGGCTTAATGTCACTCAAGTTACTTCCAAATGTGATCCAAGGAATGAAAACATTAAGTTCAAGTTTGGAATGTTCTCAGATGCTTTCACCAATGATGTTGCCTCCTCTCATTTCTTTGCAAAGTACTTTTATTGTCTTTGGTGGGGCCTTAGAAATTTAAGGTATTATTCCCATCAATGGAGAACATGGGGTGCTTGTTTAATTCAAGTAGCTTGGAGGAGGCTTCAGAAGAGAAAATTGGCAAAGAGATCAACGGCATACAGAGACAGCTTGAGTTCCTATGCAGATTCAATGCAACAATATAACGAATACGATATCGAGCTAGCAGAAGAAAATTACGATGATGACAGCGACAACACCATTGAAGACGAAGACGATATGTCTTCTGCAGACTACAAATCACAGCATCTAGGGGCAACAATTTTGGCTTCAAAGTTTGCTGCCAATACTAGAAGAGGAGTTAATCAAAAGGGTCAAACATCCAAACCTTCAAGTTTGAAAATGCCAAAGTTGTTTAAACCAGATGAACCTGATTTTTCTATGGATGGATGA 1401 44.83 MDRIIQSPASKFRPFRRQLIGSSSDSATGKAAATDEHPNYILLRYQILDPDSDIVAQWNRVFLVTCLIALFIDPLYFYTSSVGGPACLTSEVNLGVAITFFRTVTDLFFLLHMVLKFRTAYVAPSSRVFGRGELVMDAKAIATRYLKSDFVIDLAATLPLPQIVMWLVIPITRNSRVDHANNTIALLVLLQYVPRLFLIFPLNQRIIKTTGVVAKTAWAGAAYNLILYMLASHVLGSTWYLLSIGRQFSCWKSECAKENASQVLTCLPIFLDCTSLNDTLRQYWLNVTQVTSKCDPRNENIKFKFGMFSDAFTNDVASSHFFAKYFYCLWWGLRNLRYYSHQWRTWGACLIQVAWRRLQKRKLAKRSTAYRDSLSSYADSMQQYNEYDIELAEENYDDDSDNTIEDEDDMSSADYKSQHLGATILASKFAANTRRGVNQKGQTSKPSSLKMPKLFKPDEPDFSMDG* 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21377399 21381031 - Chy4G081890.1 Chy04g01471 225370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01471 466 Pfam Ion transport protein 58 336 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Chy04g01471 466 MobiDBLite consensus disorder prediction 433 449 - -
Chy04g01471 466 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 36 336 - -
Chy04g01471 466 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 336 464 - -
Chy04g01471 466 SUPERFAMILY Voltage-gated potassium channels 49 334 - -
Chy04g01471 466 MobiDBLite consensus disorder prediction 433 466 - -
Chy04g01471 466 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 18 36 336 - -
Chy04g01471 466 MobiDBLite consensus disorder prediction 452 466 - -
Chy04g01471 466 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 18 336 464 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01471 Chy-Chr4:21377399 Chy05g00992 Chy-Chr5:14586237 3.44E-104 dispersed
Chy02g02176 Chy-Chr2:25975510 Chy04g01471 Chy-Chr4:21377399 5.35E-125 transposed
Chy04g00288 Chy-Chr4:2602983 Chy04g01471 Chy-Chr4:21377399 1.80E-127 transposed
Chy02g02569 Chy-Chr2:28909271 Chy04g01471 Chy-Chr4:21377399 1.32E-180 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01471 K05391 - csv:101216651 680.248