Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01499 ATGTTCGATTGTGGTGGATACAAGTCGCAGTACATCGGTGGTCACAAGGAGAAATTCGTGAGGTTGGATGATTTGGATTCGAATTTGTCAGTGCCCTCGGGAACAAGCAAAATGAAGAAATGCCGATTCAATCTAGAAGGTCTCCCACTGCCATTCATCAGCCGATCGAAGCCACAAAACGCGTCGAAATCTTTCCGAAGGGGAGTTCAAAGAAGCTCCGACGGAATCAAAACTCTAGGTCGATCGCTCCGCTCCGGCGTGTCCAAAGTCATCTTCCCGGAGGATCTTAAAGTATCGGAACAGAAAATCTTCGATCCACAGGACAAATCGCTCCTCTTCTGGAACAAACTATTCGTGTTGTGCTGTATCCTCGCCGTCTCTGTGGATCCGTTGTTCTTCTACCTCCCTGTGTTCAACCATGCCTCTTACTGCCTCGGAATGGACACTCAGCTCGCCGTCACGACCACCACCGTGCGTACGGCTATCGATGTTTTTTACTTGATTCGGATGGGGTTTCAGTTCCGAACGGCTTACATTGCGCCGTCGTCTAGGGTGTTTGGTCGGGGGGAGCTTGTGATTGATCCGACGGAGATCGCCCAGCGGTATCTTCAGCGCTACTTTATTGCTGATTTTCTATCTGTTCTTCCTCTTCCTCAGTTAGTGGTGTGGAGATTTCTTCACCGATCAAAAGGATCAGAAGTTTTGGCAACAAAACAAGCATTGTTAAACATAGTGTTTCTTCAGTATATTCCAAGATTTATTAGATTTATACCTTTGAACATAGAGCTTAAGAAGACAGCAGGTGTTTTTGCTGAAAGTGCTTGGGCTGGTGCTGCTTACTATCTCCTCTTATACATGCTTGCCAGTCATATAGCAGGAGCATTCTGGTACTTGCTTGCAGTGGAGAGGAACGATGCATGTTGGCGGCAAGCATGCAGAAGCAGTGGTAAGTGCAACATCAACTATTTGTATTGTGGGAATAGGCACATGGCTGGGTATAAAGCTTGGAGAAATATAAGCGTTGATGTTCTCACCATGAAATGCACTGCCTTGGGAGATAATTTGCCTTTCAACTATGGCATTTACACTCAGGCCATCTCCTCTGGCATTGTTCAATCCAGAACTTTCTTCTCCAAGTTCTGCTATTGCCTGTGGTGGGGCTTGCAAAATTTAAGTACACTTGGTCAAGGGCTGCTCACCAGTACTTATCCTGGGGAGGCAGCGTGGCGGCGGTATTTAAAACGGAAAATAGCGGAGCTGCGACGAAAGGAGGAGGAGGAAGAGGTTGCGGCGGCGTATAGTACGTCGAGACTTGGGGCTACGATTTTGGCGTCGAGATTTGCGGCGAACGCGCTTAGAGGACATCGAATGAGAAATGTGAGTGGGAAGAGCTTGATTAGCTTGCAGAAGCCGAAGGAACCTGATTTTTCTGTTTACAAAGGAGAGTAA 1449 47.34 MFDCGGYKSQYIGGHKEKFVRLDDLDSNLSVPSGTSKMKKCRFNLEGLPLPFISRSKPQNASKSFRRGVQRSSDGIKTLGRSLRSGVSKVIFPEDLKVSEQKIFDPQDKSLLFWNKLFVLCCILAVSVDPLFFYLPVFNHASYCLGMDTQLAVTTTTVRTAIDVFYLIRMGFQFRTAYIAPSSRVFGRGELVIDPTEIAQRYLQRYFIADFLSVLPLPQLVVWRFLHRSKGSEVLATKQALLNIVFLQYIPRFIRFIPLNIELKKTAGVFAESAWAGAAYYLLLYMLASHIAGAFWYLLAVERNDACWRQACRSSGKCNINYLYCGNRHMAGYKAWRNISVDVLTMKCTALGDNLPFNYGIYTQAISSGIVQSRTFFSKFCYCLWWGLQNLSTLGQGLLTSTYPGEAAWRRYLKRKIAELRRKEEEEEVAAAYSTSRLGATILASRFAANALRGHRMRNVSGKSLISLQKPKEPDFSVYKGE* 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21627496 21630888 + Chy4G082170.1 Chy04g01499 225398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01499 482 Coils Coil 410 430 - -
Chy04g01499 482 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 407 479 - -
Chy04g01499 482 Pfam Ion transport protein 113 407 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Chy04g01499 482 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 8-RELATED 13 406 - -
Chy04g01499 482 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 8-RELATED 407 479 - -
Chy04g01499 482 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 13 406 - -
Chy04g01499 482 SUPERFAMILY Voltage-gated potassium channels 106 405 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01499 Chy-Chr4:21627496 Chy05g00992 Chy-Chr5:14586237 0 dispersed
Chy04g01499 Chy-Chr4:21627496 Chy09g01430 Chy-Chr9:15884045 4.89E-117 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01499 K05391 - csv:101221166 785.023