Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01518 ATGATGACAGGTTGTAAAATTAAAGTTGTGATGGTTTTGGTTTCAATGGCTGTTCTTATGCCAACTCTTAGAGCTGGTATTGCTGAGTTTGATGATTTTTTGCTCCAAAAGTCTGAAGAAGCTAAACAAGCTTCTCTTGAAGCTTTCCACCCTGACCCCATGAATGTCACTGACCATTTCAATCAACATGTTCATCTAGCTTTGGAGGGGATAGAGGGAAGCAATAGCACCAGGAGGAGCCTAGCGAAATACAACGGGCCCTGCTTGGCTACAAATCCAATTGATCGTTGCTGGCGTTGTGACCCAAATTGGGCCAAGAACCGTAAGAAGCTTGCCAAATGTGTGCTTGGTTTCGGCAGAAAAACCACTGGTGGCAAAAAGGGACGTATCTACGTTGTGACTGATCCATCAGATAACGATGTTATTAATCCTAAGCCTGGAACCCTTCGATATGGCGCTCTTCAAAAGAAACCACTATGGATCATTTTTGCGCGTAGCATGATTATTAGGCTGTCCAAGGAGCTGATGATTACTAGCCACAAGACAATTGATGCTCGTGGTGCCAATGTTCACATTGCCTATGGTGCTGGTCTTAGCATTCAATTCGCTCGGAATGTAATCATCCATGGCCTTCGCATCCACCATGTCATCTCAACTGGCGGTGGCATGATCCGAGACACTGCCAACCATGTCGGTCTTCGAACAGTTAGTGATGGAGACGGTATCTCCATCTTTGGATCAACCAACATCTGGCTCGATCATCTCTCCATGTCTAATTGCCAAGATGGACTTATCGACGCAATCCAAGGCTCTACTGCAATCACCATCTCAAACTCTCATTTCACTCATCACAATGATGTGATGCTGTTTGGTGCAAGTGATTCATATCAAGGCGACTCGATCATGCAAGTGACCGTCGCATTCAACCATTTTGGAAAGGGATTAGTGCAGAGAATGCCAAGATGCAGATGGGGTTTCTTCCATGTCGTCAACAATGATTACACTCACTGGCTCATGTACGCCATTGGTGGCAGTCAACATCCCACCATTATCAGTCAAGGAAACCGTTTCATTGCCCCACCCAACCCTGCTGCACGACAGATCACAAATAGAAACTATGCACCAGAGAGTGTATGGAGAACATGGACATGGAGATCGGAAGGGGATTTGATGATGAATGGAGCTTACTTCATTCAGTCCGGGAATCCAAGCAAACGAAGACCATACAGCAGAAGAGAAGCTTTGGAGCTTCTTCAAAACATCGACTCATCTGAACCAGATATGGGGTCTCTTAGAAGCACCATGTTGAAAACTGGGGAATCCTTGGGACAGAATTCAGTGCCAATTGCTTTATTTCTACATGGAGAACAATTTGTTTATTTTTACTCAAAGAGCGTTGGAAGGTCCTCAATGGTTGATGGTTCTGTCGGGAAGGATAGAAGTTGA 1446 45.02 MMTGCKIKVVMVLVSMAVLMPTLRAGIAEFDDFLLQKSEEAKQASLEAFHPDPMNVTDHFNQHVHLALEGIEGSNSTRRSLAKYNGPCLATNPIDRCWRCDPNWAKNRKKLAKCVLGFGRKTTGGKKGRIYVVTDPSDNDVINPKPGTLRYGALQKKPLWIIFARSMIIRLSKELMITSHKTIDARGANVHIAYGAGLSIQFARNVIIHGLRIHHVISTGGGMIRDTANHVGLRTVSDGDGISIFGSTNIWLDHLSMSNCQDGLIDAIQGSTAITISNSHFTHHNDVMLFGASDSYQGDSIMQVTVAFNHFGKGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIISQGNRFIAPPNPAARQITNRNYAPESVWRTWTWRSEGDLMMNGAYFIQSGNPSKRRPYSRREALELLQNIDSSEPDMGSLRSTMLKTGESLGQNSVPIALFLHGEQFVYFYSKSVGRSSMVDGSVGKDRS* 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21773250 21776904 + Chy4G082360.1 Chy04g01518 225417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01518 481 SUPERFAMILY Pectin lyase-like 92 406 IPR011050 -
Chy04g01518 481 Gene3D - 91 425 IPR012334 -
Chy04g01518 481 Pfam Pectate lyase 177 357 IPR002022 -
Chy04g01518 481 PANTHER PECTATE LYASE 7 415 - -
Chy04g01518 481 SMART amb_all 166 363 IPR002022 -
Chy04g01518 481 Pfam Pectate lyase, N terminus 27 81 IPR007524 GO:0030570
Chy04g01518 481 PANTHER PECTATE LYASE 18-RELATED 7 415 IPR045032 GO:0030570
Chy04g01518 481 PRINTS Pollen allergen Amb family signature 174 190 IPR018082 -
Chy04g01518 481 PRINTS Pollen allergen Amb family signature 114 131 IPR018082 -
Chy04g01518 481 PRINTS Pollen allergen Amb family signature 318 337 IPR018082 -
Chy04g01518 481 PRINTS Pollen allergen Amb family signature 138 163 IPR018082 -
Chy04g01518 481 PRINTS Pollen allergen Amb family signature 238 259 IPR018082 -
Chy04g01518 481 PRINTS Pollen allergen Amb family signature 340 359 IPR018082 -
Chy04g01518 481 PRINTS Pollen allergen Amb family signature 382 406 IPR018082 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01518 Chy-Chr4:21773250 Chy05g00262 Chy-Chr5:2297202 3.31E-163 dispersed
Chy10g00978 Chy-Chr10:15262669 Chy04g01518 Chy-Chr4:21773250 0 wgd
Chy12g01326 Chy-Chr12:17608593 Chy04g01518 Chy-Chr4:21773250 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01518 K01728 - csv:101202789 834.713