Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01520 ATGGAGGCGGCAGCTTTGGTACTGAAGAACGAGGATAATCTGAGAATATGTTGGACAGAAGAAGAAGCTCAAACTCAACCCATAAGACGTGTTAAGCGACGTCGGAGAGACCCGGCTGCCGCCACCACTACCGCCGATCAAACTAATAAGCAGCAGTCTCCGAAACAACAGTCCGATCAAGCTCCTACCACCACTATGAAGCGAAGTTCAAGATTTCGTGGCGTTAGCAGACATAGATGGACGGGGCGATTTGAAGCTCATTTGTGGGACAAACTTTCTTGGAATATGACACAGAAGAAGAAGGGCAAACAAGGAGCTTATGATGAAGAAGAATCTGCTGCAAGAGCATATGATTTAGCAGCACTTAAGTACTGGGGTGTAACAACCATCACTAATTTCCCTATATCAGAGTATGAGAAAGAAATCGAGATAATGCAAACAATGACAAAGGAGGAGTATTTGGCTTCTTTAAGAAGAAAGAGCAGTGGCTTCTCAAGAGGTGTATCGAAGTATAGAGGAGTTGCAAGGCACCATCATAATGGTAGATGGGAAGCAAGAATTGGGAGAGTTTATGGGAACAAATATCTCTATCTTGGAACTTATAGTGAGTAA 612 43.63 MEAAALVLKNEDNLRICWTEEEAQTQPIRRVKRRRRDPAAATTTADQTNKQQSPKQQSDQAPTTTMKRSSRFRGVSRHRWTGRFEAHLWDKLSWNMTQKKKGKQGAYDEEESAARAYDLAALKYWGVTTITNFPISEYEKEIEIMQTMTKEEYLASLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVYGNKYLYLGTYSE* 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21789647 21792126 + Chy4G082380.1 Chy04g01520 225419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01520 203 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 9 202 - -
Chy04g01520 203 MobiDBLite consensus disorder prediction 41 70 - -
Chy04g01520 203 Pfam AP2 domain 70 126 IPR001471 GO:0003700|GO:0006355
Chy04g01520 203 SUPERFAMILY DNA-binding domain 169 202 IPR016177 GO:0003677
Chy04g01520 203 MobiDBLite consensus disorder prediction 23 75 - -
Chy04g01520 203 ProSiteProfiles AP2/ERF domain profile. 71 134 IPR001471 GO:0003700|GO:0006355
Chy04g01520 203 Gene3D AP2/ERF domain 169 203 IPR036955 GO:0003700|GO:0006355
Chy04g01520 203 Gene3D AP2/ERF domain 70 136 IPR036955 GO:0003700|GO:0006355
Chy04g01520 203 ProSiteProfiles AP2/ERF domain profile. 170 203 IPR001471 GO:0003700|GO:0006355
Chy04g01520 203 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 9 202 - -
Chy04g01520 203 SMART rav1_2 71 140 IPR001471 GO:0003700|GO:0006355
Chy04g01520 203 CDD AP2 70 136 IPR001471 GO:0003700|GO:0006355
Chy04g01520 203 SUPERFAMILY DNA-binding domain 70 136 IPR016177 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01520 Chy-Chr4:21789647 Chy10g01211 Chy-Chr10:16828954 9.41E-72 dispersed
Chy04g01520 Chy-Chr4:21789647 Chy03g00967 Chy-Chr3:13208870 6.54E-10 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17883 PF00847 AP2 8.50E-10 CL0081 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01520 - - csv:101210782 390.193