Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01536 ATGGACCTGACTCCTGCAATTTCCACCGCGGCCGCCACCATTTCCACCGGTGGAGGAGCTGTGAAATCCCCTGAATTAGAATCCGAAACACCCATCAAAATCCAACCCACCACCAAATCTCACCCCTTCACCAACGGCGTCCTCAAGCGCCACCACCACACAGCGCCGCCGCCTCCTCAGGTGGTTTACAAAGAATGCCTCAAAAATCACGCCGCCAGTTTAGGCGGCCACGCTCTAGACGGCTGTGGCGAGTTCATGCCATCCCCAACCGCCAACGCCACGGATCCCACCTCCCTCAAATGCGCCGCTTGCGGCTGCCATCGGAATTTCCACCGCCGTGAACCGGATGACCCAATCGCTACTCCGACGACAACCCATGTCATTGAGTACCAACCCCATCACCGTCACCACCCGCTGCCTCCGCCGGCGGCGGCGGCCCATCGGAGTCCGAGTTCCGCATCTCCTCCTCCGATCTCCTCATCGTACTACCCTTCCGCACCCCACATGCTTCTAGCCCTCTCCGGTGTGCTGCCGGAGAACGCTGGGGGCGGCGGTGGATTCCACCACACGATTATGACTCCCAGTCCCAATTCGAGAAAGCGATTCAGAACAAAATTCACTCAAAATCAGAAGGAGAGAATGTACGAATTTGCGGAGAAAGTAGGATGGAAGATTCAGAAGCGAGACGAGGATATGATTCAAGAATTCTGCAGCGACGTCGGAGTTGACAGAGGGGTTCTCAAAGTTTGGATGCATAACAACAAAAACACCCTCGGGAAAAAAGACGGCGGCCGGAATATGAACGGCAGCGGTGGCGAAGGAGACGGCGACGAGAAAATTAACGGCGTTGGCGAACCACACGCCACAGCAAATGGGTCGTCTTCATCATCTTGA 894 56.26 MDLTPAISTAAATISTGGGAVKSPELESETPIKIQPTTKSHPFTNGVLKRHHHTAPPPPQVVYKECLKNHAASLGGHALDGCGEFMPSPTANATDPTSLKCAACGCHRNFHRREPDDPIATPTTTHVIEYQPHHRHHPLPPPAAAAHRSPSSASPPPISSSYYPSAPHMLLALSGVLPENAGGGGGFHHTIMTPSPNSRKRFRTKFTQNQKERMYEFAEKVGWKIQKRDEDMIQEFCSDVGVDRGVLKVWMHNNKNTLGKKDGGRNMNGSGGEGDGDEKINGVGEPHATANGSSSSS* 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21923815 21924708 - Chy4G082540.1 Chy04g01536 225435

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01536 297 MobiDBLite consensus disorder prediction 255 297 - -
Chy04g01536 297 MobiDBLite consensus disorder prediction 132 160 - -
Chy04g01536 297 Pfam ZF-HD protein dimerisation region 61 115 IPR006456 -
Chy04g01536 297 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 1 266 - -
Chy04g01536 297 SUPERFAMILY Homeodomain-like 192 260 IPR009057 -
Chy04g01536 297 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 1 266 - -
Chy04g01536 297 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 63 114 IPR006456 -
Chy04g01536 297 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 199 256 IPR006455 -
Chy04g01536 297 MobiDBLite consensus disorder prediction 30 44 - -
Chy04g01536 297 Gene3D - 190 260 - -
Chy04g01536 297 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 63 114 IPR006456 -
Chy04g01536 297 MobiDBLite consensus disorder prediction 15 59 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01536 - - - csv:101204974 517.694
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01536 Chy-Chr4:21923815 Chy07g01244 Chy-Chr7:17179886 2.62E-42 dispersed
Chy12g01373 Chy-Chr12:17926287 Chy04g01536 Chy-Chr4:21923815 2.67E-35 transposed
Chy10g00999 Chy-Chr10:15442294 Chy04g01536 Chy-Chr4:21923815 3.91E-53 wgd
Chy02g02501 Chy-Chr2:28460170 Chy04g01536 Chy-Chr4:21923815 4.97E-21 wgd
Chy04g01536 Chy-Chr4:21923815 Chy09g00254 Chy-Chr9:2076065 9.46E-63 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy02g00745 . 50 244 ZF-HD Transcription Factor Family AT4G24660 51.3 7.9e-47 184.1
Chy04g01536 . 12 298 ZF-HD Transcription Factor Family AT5G15210 52.2 1.4e-50 196.8
Chy09g00254 . 6 232 ZF-HD Transcription Factor Family AT5G15210 51.5 1.7e-37 153.3
Chy04g01536 . 22 283 ZF-HD Transcription Factor Family AT3G28920 62.4 4.9e-60 228.4
Chy09g00254 . 16 233 ZF-HD Transcription Factor Family AT3G28920 61.2 6.5e-44 174.9
Chy04g01536 . 30 262 ZF-HD Transcription Factor Family AT5G39760 62.7 3.2e-49 192.6
Chy02g00745 . 50 244 ZF-HD Transcription Factor Family AT4G24660 51.3 7.9e-47 184.1
Chy04g01536 . 30 262 ZF-HD Transcription Factor Family AT5G39760 62.7 3.2e-49 192.6
Chy04g01536 . 12 298 ZF-HD Transcription Factor Family AT5G15210 52.2 1.4e-50 196.8
Chy09g00254 . 6 232 ZF-HD Transcription Factor Family AT5G15210 51.5 1.7e-37 153.3
Chy04g01536 . 22 283 ZF-HD Transcription Factor Family AT3G28920 62.4 4.9e-60 228.4
Chy09g00254 . 16 233 ZF-HD Transcription Factor Family AT3G28920 61.2 6.5e-44 174.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001346 3 2 3 3 3 2 4 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 3 2 2 3 2 3 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17885 PF04770 ZF-HD_dimer 2.40E-29 No_clan Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g01536 Chy_Chr04 FPKM 55.131721 65.028267 46.049198 46.18206 47.084602 40.279404 45.135529 52.462654 51.111225 51.06633