Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01536 ATGGACCTGACTCCTGCAATTTCCACCGCGGCCGCCACCATTTCCACCGGTGGAGGAGCTGTGAAATCCCCTGAATTAGAATCCGAAACACCCATCAAAATCCAACCCACCACCAAATCTCACCCCTTCACCAACGGCGTCCTCAAGCGCCACCACCACACAGCGCCGCCGCCTCCTCAGGTGGTTTACAAAGAATGCCTCAAAAATCACGCCGCCAGTTTAGGCGGCCACGCTCTAGACGGCTGTGGCGAGTTCATGCCATCCCCAACCGCCAACGCCACGGATCCCACCTCCCTCAAATGCGCCGCTTGCGGCTGCCATCGGAATTTCCACCGCCGTGAACCGGATGACCCAATCGCTACTCCGACGACAACCCATGTCATTGAGTACCAACCCCATCACCGTCACCACCCGCTGCCTCCGCCGGCGGCGGCGGCCCATCGGAGTCCGAGTTCCGCATCTCCTCCTCCGATCTCCTCATCGTACTACCCTTCCGCACCCCACATGCTTCTAGCCCTCTCCGGTGTGCTGCCGGAGAACGCTGGGGGCGGCGGTGGATTCCACCACACGATTATGACTCCCAGTCCCAATTCGAGAAAGCGATTCAGAACAAAATTCACTCAAAATCAGAAGGAGAGAATGTACGAATTTGCGGAGAAAGTAGGATGGAAGATTCAGAAGCGAGACGAGGATATGATTCAAGAATTCTGCAGCGACGTCGGAGTTGACAGAGGGGTTCTCAAAGTTTGGATGCATAACAACAAAAACACCCTCGGGAAAAAAGACGGCGGCCGGAATATGAACGGCAGCGGTGGCGAAGGAGACGGCGACGAGAAAATTAACGGCGTTGGCGAACCACACGCCACAGCAAATGGGTCGTCTTCATCATCTTGA 894 56.26 MDLTPAISTAAATISTGGGAVKSPELESETPIKIQPTTKSHPFTNGVLKRHHHTAPPPPQVVYKECLKNHAASLGGHALDGCGEFMPSPTANATDPTSLKCAACGCHRNFHRREPDDPIATPTTTHVIEYQPHHRHHPLPPPAAAAHRSPSSASPPPISSSYYPSAPHMLLALSGVLPENAGGGGGFHHTIMTPSPNSRKRFRTKFTQNQKERMYEFAEKVGWKIQKRDEDMIQEFCSDVGVDRGVLKVWMHNNKNTLGKKDGGRNMNGSGGEGDGDEKINGVGEPHATANGSSSSS* 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21923815 21924708 - Chy4G082540.1 Chy04g01536 225435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01536 297 MobiDBLite consensus disorder prediction 255 297 - -
Chy04g01536 297 MobiDBLite consensus disorder prediction 132 160 - -
Chy04g01536 297 Pfam ZF-HD protein dimerisation region 61 115 IPR006456 -
Chy04g01536 297 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 1 266 - -
Chy04g01536 297 SUPERFAMILY Homeodomain-like 192 260 IPR009057 -
Chy04g01536 297 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 1 266 - -
Chy04g01536 297 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 63 114 IPR006456 -
Chy04g01536 297 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 199 256 IPR006455 -
Chy04g01536 297 MobiDBLite consensus disorder prediction 30 44 - -
Chy04g01536 297 Gene3D - 190 260 - -
Chy04g01536 297 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 63 114 IPR006456 -
Chy04g01536 297 MobiDBLite consensus disorder prediction 15 59 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01536 Chy-Chr4:21923815 Chy07g01244 Chy-Chr7:17179886 2.62E-42 dispersed
Chy12g01373 Chy-Chr12:17926287 Chy04g01536 Chy-Chr4:21923815 2.67E-35 transposed
Chy10g00999 Chy-Chr10:15442294 Chy04g01536 Chy-Chr4:21923815 3.91E-53 wgd
Chy02g02501 Chy-Chr2:28460170 Chy04g01536 Chy-Chr4:21923815 4.97E-21 wgd
Chy04g01536 Chy-Chr4:21923815 Chy09g00254 Chy-Chr9:2076065 9.46E-63 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17885 PF04770 ZF-HD_dimer 2.40E-29 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01536 - - csv:101204974 517.694