Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01539 ATGGCGAGACGCAGCGACAATGAAGAAGCCTTTATTGCCTTGGGAAACGAATGCTCTGATCCTCAACCACCCTTGTTCCGCGACCGATTTGATGAACTTTACCCGCCCGAGTTCTCACGAAAGCTTGTGGCGGAGGTGATCGCTACGTATTTGCTTGTGTTTGTGTCGTGTGGTGTGGCGGCACTGAGTGGGACTGATGAAGGGGTAGTGACGAAGCTTGGAGCTTCAATTACCTGTGGATTGATTGTGACGGTGATGATTTACTCCGTCGGACATATCTCCGGCGCTCATATGAATCCAGCGGTTACTATTGCTTTTGCTGCTGTTCGGCGATTTCCATGGAAACAGGTTCCACTCTATGCAGCAGCTCAATTAAGTGGAGCTACGTCTGCAGCCTTCACACTACGCATATTAATGGATCCAATTCAAGATTTAGGTACTACTTCACCACATGGACCGGCTTTGAAAGCACTTGTTATGGAGATTGTTGTCTCATTTTGTATGATGTTTGTCACTTCTGCGGTTGCCACCGACACCAAAGCTATAGGAGAGCTTGGAGGCGTAGCTGTGGGGTCAGCTGTATGTATCTCGTCCATCTTTGCTGGGCCAATATCGGGTGGATCGATGAACCCAGCAAGATCAATAGGACCAGCAATTGCAAGTTCACGTTACGAAGGAATTTGGGTGTACATGATCGGTCCAGTTACAGGAACCTTGCTTGCATCATTTTCATATAATTTCATACGAGCCACTGAAAAACACACCCATTCACTCTCGTTACATTGA 786 47.46 MARRSDNEEAFIALGNECSDPQPPLFRDRFDELYPPEFSRKLVAEVIATYLLVFVSCGVAALSGTDEGVVTKLGASITCGLIVTVMIYSVGHISGAHMNPAVTIAFAAVRRFPWKQVPLYAAAQLSGATSAAFTLRILMDPIQDLGTTSPHGPALKALVMEIVVSFCMMFVTSAVATDTKAIGELGGVAVGSAVCISSIFAGPISGGSMNPARSIGPAIASSRYEGIWVYMIGPVTGTLLASFSYNFIRATEKHTHSLSLH* 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21973861 21976577 - Chy4G082570.1 Chy04g01539 225438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01539 261 Gene3D Glycerol uptake facilitator protein. 23 259 IPR023271 -
Chy04g01539 261 ProSitePatterns MIP family signature. 97 105 IPR022357 -
Chy04g01539 261 PRINTS Major intrinsic protein family signature 160 178 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy04g01539 261 PRINTS Major intrinsic protein family signature 228 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy04g01539 261 PRINTS Major intrinsic protein family signature 116 135 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy04g01539 261 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy04g01539 261 PRINTS Major intrinsic protein family signature 191 213 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy04g01539 261 PRINTS Major intrinsic protein family signature 79 103 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy04g01539 261 PANTHER AQUAPORIN NIP2-1 30 260 IPR034294 -
Chy04g01539 261 Pfam Major intrinsic protein 36 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy04g01539 261 PANTHER MAJOR INTRINSIC PROTEIN, AQUAPORIN-LIKE PROTEIN-RELATED 30 260 - -
Chy04g01539 261 SUPERFAMILY Aquaporin-like 32 254 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01539 Chy-Chr4:21973861 Chy06g01297 Chy-Chr6:12116921 1.05E-69 dispersed
Chy04g01539 Chy-Chr4:21973861 Chy04g01540 Chy-Chr4:22005911 1.17E-121 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01539 K09874 - csv:101205456 503.442