Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01570 ATGCGTCCAATTTTGATGAAAGGCCATGAACGGCCTTTAACTTTCCTCAAGTACAATAGGGATGGCGATCTTCTTTTCTCTTGCGCCAAGGATCATAACCCCACCGTCTGGTACGCCGACAACGGCGAGCGATTGGGGACTTATCGTGGTCATAATGGTGCCGTTTGGTGCTGTGATGTCTCCAGAGATTCAATGCGGCTTATCACTGGTAGTGCTGATCAGACGGCAAAATTATGGAACGTACAGACTGGACAGCAACTCTTCTCCTTCAATTTCGATTCACCTGCTAGGGCAGTTGATTTCTCTGTTGGTGATAAGCTTGCAGTTATTACCACTGATCCTTTTATGGAGTTGCCCTCTGCTATTCATGTTAAACGCATTGCCAGAGACCCCTCGGAACAGACTGGTGAATCTGTGCTGCTTCTTAAAGGTCCCCAAGGAAGAATCAATAGAGCTGTTTGGGGACCTTTAAATAAGACCATCATAAGTGCAGGAGAAGATGCCGTTGTTCGCATTTGGGATTCTGAGACAGGTAAACTTTTGAAAGAATCAGACAAGGAGACAGGCCATAAGAAAACAGTAACTTCCCTTACGAAATCCTCTGATGGTTCACATTTTATTACTGGTTCTTTGGACAAGTCTGCTAAGCTGTGGGATACTAGAACATTGACGCTTATCAAGACGTATGTGACAGAACGCCCCGTCAATGCTGTTACAATGTCTCCACTTCTTGACCATGTGGTGCTTGGTGGTGGTCAGGATGCTTCAGCTGTGACAACAACTGATCATCGTGCAGGAAAGTTTGAAGCTAAATTTTATGACAAGATCCTTCAAGAAGAGATTGGAGGTGTGAAAGGGCATTTTGGACCCATCAATGCTCTCGCTTTCAATCCGGACGGAAAGAGATTTCATAGTGTTGTGTACGTTATCGTCGTGATCATTGCCAAGATTAGTAGGTCTAATAAGAATTATCGCTTCTATTTTGTTCATAAAACTGTTACAAATTCTTGGAAAAATCGAGGTCTCGGCATTTGCATTTCATATCAAAGAAATCTTTCACATCGAAGTTTTAGTCTTCCCAAGTTCTTTGAATACATGTTTGCTTACTGTGGAGTTTATGCGTTGCAGGGTGATCCAATTGGTTGGGTTTGTCCAAAACAAACCATTGAAGAGATTGAAGAGAACAATTCACCAATTAGTGTTAGGAAGCATGGGAGAGCAGATAATGTTGGTGACTTGGAGAGGCAAATTTTCTATAGATTTATTCACAAAACCTATCTTCTTCATCCAATTATTCTTGCAATGTTGCTGTTTCATGTTGGGGGACTTCCTTTTCTCATATGGGGAATGATGGTGATATGTGAGAAGTATGTGGACAAAATATTTGCACGTGTTGTGGGCTAA 1404 42.31 MRPILMKGHERPLTFLKYNRDGDLLFSCAKDHNPTVWYADNGERLGTYRGHNGAVWCCDVSRDSMRLITGSADQTAKLWNVQTGQQLFSFNFDSPARAVDFSVGDKLAVITTDPFMELPSAIHVKRIARDPSEQTGESVLLLKGPQGRINRAVWGPLNKTIISAGEDAVVRIWDSETGKLLKESDKETGHKKTVTSLTKSSDGSHFITGSLDKSAKLWDTRTLTLIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFYDKILQEEIGGVKGHFGPINALAFNPDGKRFHSVVYVIVVIIAKISRSNKNYRFYFVHKTVTNSWKNRGLGICISYQRNLSHRSFSLPKFFEYMFAYCGVYALQGDPIGWVCPKQTIEEIEENNSPISVRKHGRADNVGDLERQIFYRFIHKTYLLHPIILAMLLFHVGGLPFLIWGMMVICEKYVDKIFARVVG* 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22270707 22278816 + Chy4G082880.1 Chy04g01570 225469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01570 467 SUPERFAMILY WD40 repeat-like 4 305 IPR036322 GO:0005515
Chy04g01570 467 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 142 179 - -
Chy04g01570 467 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 1 305 - -
Chy04g01570 467 PRINTS G protein beta WD-40 repeat signature 206 220 IPR020472 -
Chy04g01570 467 PRINTS G protein beta WD-40 repeat signature 161 175 IPR020472 -
Chy04g01570 467 PRINTS G protein beta WD-40 repeat signature 67 81 IPR020472 -
Chy04g01570 467 Gene3D - 1 336 IPR015943 GO:0005515
Chy04g01570 467 Hamap Eukaryotic translation initiation factor 3 subunit I [EIF3I]. 1 308 IPR027525 GO:0003743|GO:0005737|GO:0005852
Chy04g01570 467 ProSitePatterns Trp-Asp (WD) repeats signature. 161 175 IPR019775 -
Chy04g01570 467 CDD WD40 7 303 - -
Chy04g01570 467 ProSiteProfiles Trp-Asp (WD) repeats profile. 142 183 IPR001680 GO:0005515
Chy04g01570 467 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 48 85 - -
Chy04g01570 467 Pfam WD domain, G-beta repeat 43 80 IPR001680 GO:0005515
Chy04g01570 467 Pfam WD domain, G-beta repeat 188 219 IPR001680 GO:0005515
Chy04g01570 467 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 187 222 - -
Chy04g01570 467 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 1 305 - -
Chy04g01570 467 ProSitePatterns Trp-Asp (WD) repeats signature. 67 81 IPR019775 -
Chy04g01570 467 ProSiteProfiles Trp-Asp (WD) repeats profile. 6 47 IPR001680 GO:0005515
Chy04g01570 467 SMART WD40_4 41 80 IPR001680 GO:0005515
Chy04g01570 467 SMART WD40_4 177 219 IPR001680 GO:0005515
Chy04g01570 467 SMART WD40_4 222 261 IPR001680 GO:0005515
Chy04g01570 467 SMART WD40_4 135 174 IPR001680 GO:0005515
Chy04g01570 467 SMART WD40_4 1 38 IPR001680 GO:0005515
Chy04g01570 467 ProSiteProfiles Trp-Asp (WD) repeats profile. 187 228 IPR001680 GO:0005515
Chy04g01570 467 ProSiteProfiles Trp-Asp (WD) repeats profile. 48 89 IPR001680 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g01954 Chy-Chr2:23185347 Chy04g01570 Chy-Chr4:22270707 8.52E-31 dispersed
Chy04g01570 Chy-Chr4:22270707 Chy07g01601 Chy-Chr7:20154510 6.88E-22 dispersed
Chy04g01570 Chy-Chr4:22270707 Chy07g01597 Chy-Chr7:20101014 2.02E-27 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01570 K03246 - csv:101211648 616.305