Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01571 ATGGGGATTAAATTTTCAAAGCCAAATCAGGGGAAGGTGGACAACCTTAGTCTGCAACACCACCTGATCAATTATCTCTCGAAAAGCTTTTACATCCGTAACTTGGTATCTAAGCAAAGGAGGCGCATGCTTGTTGCTGGATACGATCTTGACATGTCATACATCACTGATCATGTATTGGCAATGTCATTTCCTGCGGAACGGATGCGCGCAGTGTATCGTAATCCCCTATGGCAGGTTAAGTCTGTATTGGACATGAGGCATCAAGGACATTACAAGATCTATAATCTCTGCATTGAAGAATCATATGATCCATCACATTTTCATGGGCGCGTGGAGTCATTTCCTTTCGACGATAATCACGTTCCACATCTACAGATGATCAAAATCTTCTGTGAAAATGTCTCTTCATGGTTATCATCCCACCCAAAGAATATTGCGGTTATACATTGCATGGCTGGAAAAGGTCGAACAGGATTGATGGTATGTGCCTATTTGGTTTACTGTGGCATGTCAGTGGAGGATGCCCTTCAGCTGTATGCTCAGAGGCGGACGACCAATAACGAAGGAGTGTCAATTCCAAGCCAACGACGGTATGTTGGCTACTGGTCAAGGTGCCTTTCCTTTCCCAGGGGAGTTTATAATGGACCTCCCGAGGTGAAGTTGCCCAAACCATGTCGGAGGGAATTGCAAAGAATTCGACTTTATGACGCAGTTAACACTGAATCAATTTTCTTTGTGGTCTCAGAATCGCAGGAGGTTCCTTCTCAACTATACCGTCCATCTATGGAACTTACCAGGAAATGTTGCAGACAATTTAAGAGAGGATATGAAAGAAGTAGTAGTCCTCGTTATTTTCTATCTTTTGTTGAAGGCGAAAATGAAGGGAACAAGTCCGAAGTAGAGCCTCATCTCGTTGTTCAAATGGATACTGAGTGTTCCGCACTATACAACAAAACCTGCCTTGACTACAATTTTGAGAAGCCTCTACCACTAACGGGAGATGTGCGCATCATATTCTACGCAAAGATGTTTGGAGGTCGTCTCTTTTATGCATGCTTCAACACAGCATTCATTAAAAACAGCTTGCTACAGCTAAGGTTGCAGGATTTGGACAAAGTTGGGAAAAAGGGAAGGTCAATTTGTGGTCCTTCCTTCTGCTTGGAGTTAGTATTTGGTCCTGCCAATGCAAAACACTCGTTTTCGACTTCATCCGACGACAATGATGATCCTCAAAGTGATTTGTCTTGA 1251 43.25 MGIKFSKPNQGKVDNLSLQHHLINYLSKSFYIRNLVSKQRRRMLVAGYDLDMSYITDHVLAMSFPAERMRAVYRNPLWQVKSVLDMRHQGHYKIYNLCIEESYDPSHFHGRVESFPFDDNHVPHLQMIKIFCENVSSWLSSHPKNIAVIHCMAGKGRTGLMVCAYLVYCGMSVEDALQLYAQRRTTNNEGVSIPSQRRYVGYWSRCLSFPRGVYNGPPEVKLPKPCRRELQRIRLYDAVNTESIFFVVSESQEVPSQLYRPSMELTRKCCRQFKRGYERSSSPRYFLSFVEGENEGNKSEVEPHLVVQMDTECSALYNKTCLDYNFEKPLPLTGDVRIIFYAKMFGGRLFYACFNTAFIKNSLLQLRLQDLDKVGKKGRSICGPSFCLELVFGPANAKHSFSTSSDDNDDPQSDLS* 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22279642 22283546 + Chy4G082890.1 Chy04g01571 225470

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01571 416 ProSitePatterns Tyrosine specific protein phosphatases active site. 149 159 IPR016130 GO:0016311|GO:0016791
Chy04g01571 416 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 1 407 - -
Chy04g01571 416 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 291 394 IPR035892 -
Chy04g01571 416 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 122 184 IPR000387 GO:0016311|GO:0016791
Chy04g01571 416 ProSiteProfiles C2 tensin-type domain profile. 241 395 IPR014020 -
Chy04g01571 416 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 49 207 IPR029021 -
Chy04g01571 416 Pfam Tyrosine phosphatase family 144 186 IPR026893 GO:0004721
Chy04g01571 416 Gene3D Protein tyrosine phosphatase superfamily 28 209 IPR029021 -
Chy04g01571 416 ProSiteProfiles Phosphatase tensin-type domain profile. 41 210 IPR029023 -
Chy04g01571 416 Gene3D - 284 397 - -
Chy04g01571 416 CDD PTP_PTEN 51 205 IPR045101 GO:0016791
Chy04g01571 416 Pfam C2 domain of PTEN tumour-suppressor protein 317 392 IPR014020 -
Chy04g01571 416 PANTHER BNAC03G16750D PROTEIN 1 407 - -
Chy04g01571 416 SMART PTEN_C2_2 223 394 IPR014020 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01571 K01110 PTEN; phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [EC:3.1.3.16 3.1.3.48 3.1.3.67] - csv:101212127 849.736
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00892 Chy-Chr2:5753818 Chy04g01571 Chy-Chr4:22279642 6.67E-43 dispersed
Chy04g01571 Chy-Chr4:22279642 Chy01g00080 Chy-Chr1:535322 3.72E-46 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy02g00892 . 33 608 Protein tyrosine phosphatase (PTP) family AT3G50110 62.4 2.6e-193 672.2
Chy01g00080 . 6 613 Protein tyrosine phosphatase (PTP) family AT3G50110 57.3 1.2e-182 636.7
Chy04g01571 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 66.2 3.3e-157 551.6
Chy03g00887 . 1 860 Protein tyrosine phosphatase (PTP) family AT3G10550 68.5 0.0e+00 1177.5
Chy03g00887 . 1 860 Protein tyrosine phosphatase (PTP) family AT5G04540 65.7 0.0e+00 1114.0
Chy02g02115 . 51 1308 Protein tyrosine phosphatase (PTP) family AT5G58160 53.4 4.6e-306 1047.7
Chy02g02475 CCT 1 376 Protein tyrosine phosphatase (PTP) family AT5G58160 63.3 4.8e-138 489.6
Chy01g01195 . 4 277 Protein tyrosine phosphatase (PTP) family AT1G71860 67.3 2.4e-108 389.0
Chy02g02701 . 11 908 Protein tyrosine phosphatase (PTP) family AT5G23720 64.2 0.0e+00 1075.5
Chy11g01429 . 33 171 Protein tyrosine phosphatase (PTP) family AT3G06110 57.9 8.0e-41 163.7
Chy05g00525 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 76.9 6.0e-71 263.8
Chy10g01271 . 113 393 Protein tyrosine phosphatase (PTP) family AT3G52180 69.0 6.4e-115 410.6
Chy10g00338 . 29 283 Protein tyrosine phosphatase (PTP) family AT3G10940 74.0 1.9e-111 399.1
Chy04g01457 . 141 589 Protein tyrosine phosphatase (PTP) family AT3G01510 71.9 2.0e-203 705.3
Chy11g00950 . 2 214 Protein tyrosine phosphatase (PTP) family AT2G32960 57.5 5.8e-75 277.7
Chy05g00519 . 43 240 Protein tyrosine phosphatase (PTP) family AT2G32960 62.9 8.2e-69 257.3
Chy02g01674 . 3 170 Protein tyrosine phosphatase (PTP) family AT2G32960 52.0 1.8e-55 213.0
Chy06g02072 . 14 348 Protein tyrosine phosphatase (PTP) family AT2G35680 55.6 1.3e-101 366.7
Chy05g01416 . 18 264 Protein tyrosine phosphatase (PTP) family AT2G35680 54.9 1.6e-80 296.6
Chy05g01416 . 28 202 Protein tyrosine phosphatase (PTP) family AT5G56610 52.6 7.8e-45 177.2
Chy06g02072 . 51 226 Protein tyrosine phosphatase (PTP) family AT5G56610 51.7 1.0e-44 176.8
Chy11g00950 . 44 214 Protein tyrosine phosphatase (PTP) family AT4G03960 76.6 2.5e-78 288.5
Chy05g00519 . 41 239 Protein tyrosine phosphatase (PTP) family AT4G03960 61.3 2.2e-66 248.8
Chy02g01674 . 13 170 Protein tyrosine phosphatase (PTP) family AT4G03960 62.0 5.0e-58 221.1
Chy02g01674 . 1 201 Protein tyrosine phosphatase (PTP) family AT3G02800 68.6 8.1e-80 293.5
Chy11g00950 . 44 208 Protein tyrosine phosphatase (PTP) family AT3G02800 60.6 4.1e-55 211.5
Chy10g00579 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 64.1 2.2e-61 234.2
Chy04g01571 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 66.2 3.3e-157 551.6
Chy01g00080 . 33 613 Protein tyrosine phosphatase (PTP) family AT3G19420 65.8 2.4e-220 761.9
Chy02g00892 . 31 608 Protein tyrosine phosphatase (PTP) family AT3G19420 61.9 4.6e-195 677.9
Chy02g00892 . 33 608 Protein tyrosine phosphatase (PTP) family AT3G50110 62.4 2.6e-193 672.2
Chy01g00080 . 6 613 Protein tyrosine phosphatase (PTP) family AT3G50110 57.3 1.2e-182 636.7
Chy02g02115 . 51 1308 Protein tyrosine phosphatase (PTP) family AT5G58160 53.4 4.6e-306 1047.7
Chy02g02475 CCT 1 376 Protein tyrosine phosphatase (PTP) family AT5G58160 63.3 4.8e-138 489.6
Chy03g00887 . 1 860 Protein tyrosine phosphatase (PTP) family AT3G10550 68.5 0.0e+00 1177.5
Chy03g00887 . 1 860 Protein tyrosine phosphatase (PTP) family AT5G04540 65.7 0.0e+00 1114.0
Chy11g00890 . 17 244 Protein tyrosine phosphatase (PTP) family AT3G44620 58.2 5.2e-71 264.6
Chy06g02132 . 27 311 Protein tyrosine phosphatase (PTP) family AT2G35320 64.2 2.5e-109 392.1
Chy08g00661 . 1 673 Protein tyrosine phosphatase (PTP) family AT3G09100 68.7 9.0e-277 949.5
Chy08g00661 . 5 673 Protein tyrosine phosphatase (PTP) family AT5G01290 65.5 3.4e-252 867.8
Chy08g00661 . 86 673 Protein tyrosine phosphatase (PTP) family AT5G28210 56.4 4.9e-184 641.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006631 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g01571 Chy_Chr04 FPKM 13.79015 17.187368 15.639387 14.708748 148.692566 144.122528 144.541077 1.722294 1.456081 1.690206