Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01571 ATGGGGATTAAATTTTCAAAGCCAAATCAGGGGAAGGTGGACAACCTTAGTCTGCAACACCACCTGATCAATTATCTCTCGAAAAGCTTTTACATCCGTAACTTGGTATCTAAGCAAAGGAGGCGCATGCTTGTTGCTGGATACGATCTTGACATGTCATACATCACTGATCATGTATTGGCAATGTCATTTCCTGCGGAACGGATGCGCGCAGTGTATCGTAATCCCCTATGGCAGGTTAAGTCTGTATTGGACATGAGGCATCAAGGACATTACAAGATCTATAATCTCTGCATTGAAGAATCATATGATCCATCACATTTTCATGGGCGCGTGGAGTCATTTCCTTTCGACGATAATCACGTTCCACATCTACAGATGATCAAAATCTTCTGTGAAAATGTCTCTTCATGGTTATCATCCCACCCAAAGAATATTGCGGTTATACATTGCATGGCTGGAAAAGGTCGAACAGGATTGATGGTATGTGCCTATTTGGTTTACTGTGGCATGTCAGTGGAGGATGCCCTTCAGCTGTATGCTCAGAGGCGGACGACCAATAACGAAGGAGTGTCAATTCCAAGCCAACGACGGTATGTTGGCTACTGGTCAAGGTGCCTTTCCTTTCCCAGGGGAGTTTATAATGGACCTCCCGAGGTGAAGTTGCCCAAACCATGTCGGAGGGAATTGCAAAGAATTCGACTTTATGACGCAGTTAACACTGAATCAATTTTCTTTGTGGTCTCAGAATCGCAGGAGGTTCCTTCTCAACTATACCGTCCATCTATGGAACTTACCAGGAAATGTTGCAGACAATTTAAGAGAGGATATGAAAGAAGTAGTAGTCCTCGTTATTTTCTATCTTTTGTTGAAGGCGAAAATGAAGGGAACAAGTCCGAAGTAGAGCCTCATCTCGTTGTTCAAATGGATACTGAGTGTTCCGCACTATACAACAAAACCTGCCTTGACTACAATTTTGAGAAGCCTCTACCACTAACGGGAGATGTGCGCATCATATTCTACGCAAAGATGTTTGGAGGTCGTCTCTTTTATGCATGCTTCAACACAGCATTCATTAAAAACAGCTTGCTACAGCTAAGGTTGCAGGATTTGGACAAAGTTGGGAAAAAGGGAAGGTCAATTTGTGGTCCTTCCTTCTGCTTGGAGTTAGTATTTGGTCCTGCCAATGCAAAACACTCGTTTTCGACTTCATCCGACGACAATGATGATCCTCAAAGTGATTTGTCTTGA 1251 43.25 MGIKFSKPNQGKVDNLSLQHHLINYLSKSFYIRNLVSKQRRRMLVAGYDLDMSYITDHVLAMSFPAERMRAVYRNPLWQVKSVLDMRHQGHYKIYNLCIEESYDPSHFHGRVESFPFDDNHVPHLQMIKIFCENVSSWLSSHPKNIAVIHCMAGKGRTGLMVCAYLVYCGMSVEDALQLYAQRRTTNNEGVSIPSQRRYVGYWSRCLSFPRGVYNGPPEVKLPKPCRRELQRIRLYDAVNTESIFFVVSESQEVPSQLYRPSMELTRKCCRQFKRGYERSSSPRYFLSFVEGENEGNKSEVEPHLVVQMDTECSALYNKTCLDYNFEKPLPLTGDVRIIFYAKMFGGRLFYACFNTAFIKNSLLQLRLQDLDKVGKKGRSICGPSFCLELVFGPANAKHSFSTSSDDNDDPQSDLS* 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22279642 22283546 + Chy4G082890.1 Chy04g01571 225470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01571 416 ProSitePatterns Tyrosine specific protein phosphatases active site. 149 159 IPR016130 GO:0016311|GO:0016791
Chy04g01571 416 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 1 407 - -
Chy04g01571 416 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 291 394 IPR035892 -
Chy04g01571 416 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 122 184 IPR000387 GO:0016311|GO:0016791
Chy04g01571 416 ProSiteProfiles C2 tensin-type domain profile. 241 395 IPR014020 -
Chy04g01571 416 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 49 207 IPR029021 -
Chy04g01571 416 Pfam Tyrosine phosphatase family 144 186 IPR026893 GO:0004721
Chy04g01571 416 Gene3D Protein tyrosine phosphatase superfamily 28 209 IPR029021 -
Chy04g01571 416 ProSiteProfiles Phosphatase tensin-type domain profile. 41 210 IPR029023 -
Chy04g01571 416 Gene3D - 284 397 - -
Chy04g01571 416 CDD PTP_PTEN 51 205 IPR045101 GO:0016791
Chy04g01571 416 Pfam C2 domain of PTEN tumour-suppressor protein 317 392 IPR014020 -
Chy04g01571 416 PANTHER BNAC03G16750D PROTEIN 1 407 - -
Chy04g01571 416 SMART PTEN_C2_2 223 394 IPR014020 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00892 Chy-Chr2:5753818 Chy04g01571 Chy-Chr4:22279642 6.67E-43 dispersed
Chy04g01571 Chy-Chr4:22279642 Chy01g00080 Chy-Chr1:535322 3.72E-46 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01571 K01110 - csv:101212127 849.736