Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy04g01571 | ATGGGGATTAAATTTTCAAAGCCAAATCAGGGGAAGGTGGACAACCTTAGTCTGCAACACCACCTGATCAATTATCTCTCGAAAAGCTTTTACATCCGTAACTTGGTATCTAAGCAAAGGAGGCGCATGCTTGTTGCTGGATACGATCTTGACATGTCATACATCACTGATCATGTATTGGCAATGTCATTTCCTGCGGAACGGATGCGCGCAGTGTATCGTAATCCCCTATGGCAGGTTAAGTCTGTATTGGACATGAGGCATCAAGGACATTACAAGATCTATAATCTCTGCATTGAAGAATCATATGATCCATCACATTTTCATGGGCGCGTGGAGTCATTTCCTTTCGACGATAATCACGTTCCACATCTACAGATGATCAAAATCTTCTGTGAAAATGTCTCTTCATGGTTATCATCCCACCCAAAGAATATTGCGGTTATACATTGCATGGCTGGAAAAGGTCGAACAGGATTGATGGTATGTGCCTATTTGGTTTACTGTGGCATGTCAGTGGAGGATGCCCTTCAGCTGTATGCTCAGAGGCGGACGACCAATAACGAAGGAGTGTCAATTCCAAGCCAACGACGGTATGTTGGCTACTGGTCAAGGTGCCTTTCCTTTCCCAGGGGAGTTTATAATGGACCTCCCGAGGTGAAGTTGCCCAAACCATGTCGGAGGGAATTGCAAAGAATTCGACTTTATGACGCAGTTAACACTGAATCAATTTTCTTTGTGGTCTCAGAATCGCAGGAGGTTCCTTCTCAACTATACCGTCCATCTATGGAACTTACCAGGAAATGTTGCAGACAATTTAAGAGAGGATATGAAAGAAGTAGTAGTCCTCGTTATTTTCTATCTTTTGTTGAAGGCGAAAATGAAGGGAACAAGTCCGAAGTAGAGCCTCATCTCGTTGTTCAAATGGATACTGAGTGTTCCGCACTATACAACAAAACCTGCCTTGACTACAATTTTGAGAAGCCTCTACCACTAACGGGAGATGTGCGCATCATATTCTACGCAAAGATGTTTGGAGGTCGTCTCTTTTATGCATGCTTCAACACAGCATTCATTAAAAACAGCTTGCTACAGCTAAGGTTGCAGGATTTGGACAAAGTTGGGAAAAAGGGAAGGTCAATTTGTGGTCCTTCCTTCTGCTTGGAGTTAGTATTTGGTCCTGCCAATGCAAAACACTCGTTTTCGACTTCATCCGACGACAATGATGATCCTCAAAGTGATTTGTCTTGA | 1251 | 43.25 | MGIKFSKPNQGKVDNLSLQHHLINYLSKSFYIRNLVSKQRRRMLVAGYDLDMSYITDHVLAMSFPAERMRAVYRNPLWQVKSVLDMRHQGHYKIYNLCIEESYDPSHFHGRVESFPFDDNHVPHLQMIKIFCENVSSWLSSHPKNIAVIHCMAGKGRTGLMVCAYLVYCGMSVEDALQLYAQRRTTNNEGVSIPSQRRYVGYWSRCLSFPRGVYNGPPEVKLPKPCRRELQRIRLYDAVNTESIFFVVSESQEVPSQLYRPSMELTRKCCRQFKRGYERSSSPRYFLSFVEGENEGNKSEVEPHLVVQMDTECSALYNKTCLDYNFEKPLPLTGDVRIIFYAKMFGGRLFYACFNTAFIKNSLLQLRLQDLDKVGKKGRSICGPSFCLELVFGPANAKHSFSTSSDDNDDPQSDLS* | 417 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 22279642 | 22283546 | + | Chy4G082890.1 | Chy04g01571 | 225470 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy04g01571 | 416 | ProSitePatterns | Tyrosine specific protein phosphatases active site. | 149 | 159 | IPR016130 | GO:0016311|GO:0016791 | |
Chy04g01571 | 416 | PANTHER | PHOSPHATASE WITH HOMOLOGY TO TENSIN | 1 | 407 | - | - | |
Chy04g01571 | 416 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 291 | 394 | IPR035892 | - | |
Chy04g01571 | 416 | ProSiteProfiles | Tyrosine specific protein phosphatases domain profile. | 122 | 184 | IPR000387 | GO:0016311|GO:0016791 | |
Chy04g01571 | 416 | ProSiteProfiles | C2 tensin-type domain profile. | 241 | 395 | IPR014020 | - | |
Chy04g01571 | 416 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 49 | 207 | IPR029021 | - | |
Chy04g01571 | 416 | Pfam | Tyrosine phosphatase family | 144 | 186 | IPR026893 | GO:0004721 | |
Chy04g01571 | 416 | Gene3D | Protein tyrosine phosphatase superfamily | 28 | 209 | IPR029021 | - | |
Chy04g01571 | 416 | ProSiteProfiles | Phosphatase tensin-type domain profile. | 41 | 210 | IPR029023 | - | |
Chy04g01571 | 416 | Gene3D | - | 284 | 397 | - | - | |
Chy04g01571 | 416 | CDD | PTP_PTEN | 51 | 205 | IPR045101 | GO:0016791 | |
Chy04g01571 | 416 | Pfam | C2 domain of PTEN tumour-suppressor protein | 317 | 392 | IPR014020 | - | |
Chy04g01571 | 416 | PANTHER | BNAC03G16750D PROTEIN | 1 | 407 | - | - | |
Chy04g01571 | 416 | SMART | PTEN_C2_2 | 223 | 394 | IPR014020 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy02g00892 | Chy-Chr2:5753818 | Chy04g01571 | Chy-Chr4:22279642 | 6.67E-43 | dispersed | |
Chy04g01571 | Chy-Chr4:22279642 | Chy01g00080 | Chy-Chr1:535322 | 3.72E-46 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy04g01571 | K01110 | - | csv:101212127 | 849.736 |